Examples with Immunization org.hl7.fhir.r4.model.Immunization used on opensource projects

Example 71 with Immunization

use of org.hl7.fhir.r4.model.Immunization in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeImmunization.

protected void composeImmunization(Complex parent, String parentType, String name, Immunization element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeDomainResource(t, "Immunization", name, element, index);
    for (int i = 0; i < element.getIdentifier().size(); i++) composeIdentifier(t, "Immunization", "identifier", element.getIdentifier().get(i), i);
    if (element.hasStatusElement())
        composeEnum(t, "Immunization", "status", element.getStatusElement(), -1);
    if (element.hasNotGivenElement())
        composeBoolean(t, "Immunization", "notGiven", element.getNotGivenElement(), -1);
    if (element.hasVaccineCode())
        composeCodeableConcept(t, "Immunization", "vaccineCode", element.getVaccineCode(), -1);
    if (element.hasPatient())
        composeReference(t, "Immunization", "patient", element.getPatient(), -1);
    if (element.hasEncounter())
        composeReference(t, "Immunization", "encounter", element.getEncounter(), -1);
    if (element.hasDateElement())
        composeDateTime(t, "Immunization", "date", element.getDateElement(), -1);
    if (element.hasPrimarySourceElement())
        composeBoolean(t, "Immunization", "primarySource", element.getPrimarySourceElement(), -1);
    if (element.hasReportOrigin())
        composeCodeableConcept(t, "Immunization", "reportOrigin", element.getReportOrigin(), -1);
    if (element.hasLocation())
        composeReference(t, "Immunization", "location", element.getLocation(), -1);
    if (element.hasManufacturer())
        composeReference(t, "Immunization", "manufacturer", element.getManufacturer(), -1);
    if (element.hasLotNumberElement())
        composeString(t, "Immunization", "lotNumber", element.getLotNumberElement(), -1);
    if (element.hasExpirationDateElement())
        composeDate(t, "Immunization", "expirationDate", element.getExpirationDateElement(), -1);
    if (element.hasSite())
        composeCodeableConcept(t, "Immunization", "site", element.getSite(), -1);
    if (element.hasRoute())
        composeCodeableConcept(t, "Immunization", "route", element.getRoute(), -1);
    if (element.hasDoseQuantity())
        composeQuantity(t, "Immunization", "doseQuantity", element.getDoseQuantity(), -1);
    for (int i = 0; i < element.getPractitioner().size(); i++) composeImmunizationImmunizationPractitionerComponent(t, "Immunization", "practitioner", element.getPractitioner().get(i), i);
    for (int i = 0; i < element.getNote().size(); i++) composeAnnotation(t, "Immunization", "note", element.getNote().get(i), i);
    if (element.hasExplanation())
        composeImmunizationImmunizationExplanationComponent(t, "Immunization", "explanation", element.getExplanation(), -1);
    for (int i = 0; i < element.getReaction().size(); i++) composeImmunizationImmunizationReactionComponent(t, "Immunization", "reaction", element.getReaction().get(i), i);
    for (int i = 0; i < element.getVaccinationProtocol().size(); i++) composeImmunizationImmunizationVaccinationProtocolComponent(t, "Immunization", "vaccinationProtocol", element.getVaccinationProtocol().get(i), i);
}

Example 72 with Immunization

use of org.hl7.fhir.r4.model.Immunization in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeImmunizationImmunizationEducationComponent.

protected void composeImmunizationImmunizationEducationComponent(Complex parent, String parentType, String name, Immunization.ImmunizationEducationComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "education", name, element, index);
    if (element.hasDocumentTypeElement())
        composeString(t, "Immunization", "documentType", element.getDocumentTypeElement(), -1);
    if (element.hasReferenceElement())
        composeUri(t, "Immunization", "reference", element.getReferenceElement(), -1);
    if (element.hasPublicationDateElement())
        composeDateTime(t, "Immunization", "publicationDate", element.getPublicationDateElement(), -1);
    if (element.hasPresentationDateElement())
        composeDateTime(t, "Immunization", "presentationDate", element.getPresentationDateElement(), -1);
}

Example 73 with Immunization

use of org.hl7.fhir.r4.model.Immunization in project org.hl7.fhir.core by hapifhir.

the class ArgonautConverter method processImmunizationsSection.

private void processImmunizationsSection(CDAUtilities cda, Convert convert, Element section, Context context) throws Exception {
    scanSection("Immunizations", section);
    ListResource list = new ListResource();
    list.setId(context.getBaseId() + "-list-immunizations");
    list.setUserData("profile", "http://hl7.org/fhir/StructureDefinition/list-daf-dafimmunizationlist");
    list.setSubject(context.getSubjectRef());
    list.setCode(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(section, "code")), null));
    list.setTitle(cda.getChild(section, "title").getTextContent());
    list.setStatus(ListStatus.CURRENT);
    list.setMode(ListMode.SNAPSHOT);
    list.setDateElement(context.getNow());
    list.setSource(context.getAuthorRef());
    buildNarrative(list, cda.getChild(section, "text"));
    int i = 0;
    for (Element c : cda.getChildren(section, "entry")) {
        // allergy problem act
        Element sa = cda.getChild(c, "substanceAdministration");
        Immunization imm = new Immunization();
        imm.setId(context.getBaseId() + "-immunization-" + i);
        imm.setUserData("profile", "http://hl7.org/fhir/StructureDefinition/immunization-daf-dafimmunization");
        i++;
        imm.setPatient(context.getSubjectRef());
        imm.setEncounter(new Reference().setReference("Encounter/" + context.getEncounter().getId()));
        imm.setNotGiven("true".equals(sa.getAttribute("negationInd")));
        imm.setStatus(convertImmunizationStatus(cda.getChild(sa, "statusCode")));
        boolean found = false;
        for (Element e : cda.getChildren(sa, "id")) {
            Identifier id = convert.makeIdentifierFromII(e);
            imm.getIdentifier().add(id);
        }
        if (!found) {
            list.addEntry().setItem(new Reference().setReference("Immunization/" + imm.getId()));
            imm.setDateElement(convert.makeDateTimeFromTS(cda.getChild(cda.getChild(sa, "effectiveTime"), "low")));
            if (imm.getNotGiven()) {
                Element reason = cda.getChild(cda.getChildByAttribute(sa, "entryRelationship", "typeCode", "RSON"), "observation");
                imm.setExplanation(new ImmunizationExplanationComponent());
                imm.getExplanation().addReasonNotGiven(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(reason, "code")), null));
            }
            Element mm = cda.getChild(cda.getChild(cda.getChild(sa, "consumable"), "manufacturedProduct"), "manufacturedMaterial");
            imm.setVaccineCode(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(mm, "code")), null));
            imm.setRoute(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(sa, "routeCode")), null));
            if (cda.getChild(mm, "lotNumberText") != null)
                imm.setLotNumber(cda.getChild(mm, "lotNumberText").getTextContent());
            Element mr = cda.getChild(cda.getChild(cda.getChild(sa, "consumable"), "manufacturedProduct"), "manufacturerOrganization");
            if (mr != null)
                imm.setManufacturer(new Reference().setDisplay(cda.getChild(mr, "name").getTextContent()));
            // the problem with this is that you can't have just a dose sequence number
            // Element subject = cda.getChild(cda.getChildByAttribute(sa, "entryRelationship", "typeCode", "SUBJ"), "observation");
            // if (subject != null)
            // imm.addVaccinationProtocol().setDoseSequence(Integer.parseInt(cda.getChild(subject, "value").getAttribute("value")));
            boolean hasprf = false;
            for (Element e : cda.getChildren(sa, "performer")) {
                if (imm.hasPractitioner())
                    throw new Error("additional performer discovered");
                Practitioner p = processPerformer(cda, convert, context, e, "assignedEntity", "assignedPerson");
                Reference ref = new Reference().setReference("Practitioner/" + p.getId()).setDisplay(p.getUserString("display"));
                imm.addPractitioner().setActor(ref).setRole(new org.hl7.fhir.dstu3.model.CodeableConcept().addCoding(new Coding().setSystem("http://hl7.org/fhir/v2/0443").setCode("AP")));
                hasprf = true;
            }
            imm.setPrimarySource(hasprf);
            saveResource(imm);
        }
    }
    saveResource(list);
}

Example 74 with Immunization

use of org.hl7.fhir.r4.model.Immunization in project org.hl7.fhir.core by hapifhir.

the class TurtleTests method test_immunization_example_refused.

@Test
public void test_immunization_example_refused() throws FileNotFoundException, IOException, Exception {
    System.out.println("immunization-example-refused.ttl");
    new Turtle().parse(TextFile.fileToString("C:\\work\\org.hl7.fhir\\build\\publish\\immunization-example-refused.ttl"));
}

Example 75 with Immunization

use of org.hl7.fhir.r4.model.Immunization in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeImmunizationImmunizationExplanationComponent.

protected void composeImmunizationImmunizationExplanationComponent(Complex parent, String parentType, String name, Immunization.ImmunizationExplanationComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "explanation", name, element, index);
    for (int i = 0; i < element.getReason().size(); i++) composeCodeableConcept(t, "Immunization", "reason", element.getReason().get(i), i);
    for (int i = 0; i < element.getReasonNotGiven().size(); i++) composeCodeableConcept(t, "Immunization", "reasonNotGiven", element.getReasonNotGiven().get(i), i);
}