Examples with Period org.hl7.fhir.r4.model.Period used on opensource projects

Example 21 with Period

use of org.hl7.fhir.r4.model.Period in project quality-measure-and-cohort-service by Alvearie.

the class CohortEngineRestHandlerTest method testEvaluateMeasureSuccess.

/**
 * Test the successful building of a response.
 */
@PrepareForTest({ Response.class, TenantManager.class, ServiceBaseUtility.class })
@Test
public void testEvaluateMeasureSuccess() throws Exception {
    prepMocks();
    PowerMockito.mockStatic(ServiceBaseUtility.class);
    PowerMockito.when(ServiceBaseUtility.apiSetup(VERSION, logger, MethodNames.EVALUATE_MEASURE.getName())).thenReturn(null);
    mockResponseClasses();
    Library library = TestHelper.getTemplateLibrary();
    Measure measure = TestHelper.getTemplateMeasure(library);
    Patient patient = getPatient("patientId", AdministrativeGender.MALE, 40);
    mockFhirResourceRetrieval("/metadata?_format=json", getCapabilityStatement());
    mockFhirResourceRetrieval(patient);
    FhirServerConfig clientConfig = getFhirServerConfig();
    Map<String, Parameter> parameterOverrides = new HashMap<>();
    parameterOverrides.put("Measurement Period", new IntervalParameter(new DateParameter("2019-07-04"), true, new DateParameter("2020-07-04"), true));
    MeasureContext measureContext = new MeasureContext(measure.getId(), parameterOverrides);
    MeasureEvaluation evaluationRequest = new MeasureEvaluation();
    evaluationRequest.setDataServerConfig(clientConfig);
    evaluationRequest.setPatientId(patient.getId());
    evaluationRequest.setMeasureContext(measureContext);
    // evaluationRequest.setEvidenceOptions(evidenceOptions);
    evaluationRequest.setExpandValueSets(true);
    evaluationRequest.setSearchPageSize(500);
    FhirContext fhirContext = FhirContext.forR4();
    IParser parser = fhirContext.newJsonParser().setPrettyPrint(true);
    // Create the metadata part of the request
    ObjectMapper om = new ObjectMapper();
    String json = om.writeValueAsString(evaluationRequest);
    ByteArrayInputStream jsonIs = new ByteArrayInputStream(json.getBytes());
    IAttachment rootPart = mockAttachment(jsonIs);
    // Create the ZIP part of the request
    ByteArrayOutputStream baos = new ByteArrayOutputStream();
    TestHelper.createMeasureArtifact(baos, parser, measure, library);
    ByteArrayInputStream zipIs = new ByteArrayInputStream(baos.toByteArray());
    IAttachment measurePart = mockAttachment(zipIs);
    // Assemble them together into a reasonable facsimile of the real request
    IMultipartBody body = mock(IMultipartBody.class);
    when(body.getAttachment(CohortEngineRestHandler.REQUEST_DATA_PART)).thenReturn(rootPart);
    when(body.getAttachment(CohortEngineRestHandler.MEASURE_PART)).thenReturn(measurePart);
    Response loadResponse = restHandler.evaluateMeasure(mockRequestContext, VERSION, body);
    assertEquals(mockResponse, loadResponse);
    PowerMockito.verifyStatic(Response.class);
    Response.status(Response.Status.OK);
}

Example 22 with Period

use of org.hl7.fhir.r4.model.Period in project quality-measure-and-cohort-service by Alvearie.

the class DefaultVT method testMeasureEvaluationByMeasureIdentifier.

// to tag a specific test to be part of DVT (deployment verification test)
@Category(DVT.class)
@Test
public /**
 * Test a successful measure evaluation using identifier and version as the lookup key
 */
void testMeasureEvaluationByMeasureIdentifier() throws Exception {
    // You want -Denabled.dark.features=all in your Liberty jvm.options
    Assume.assumeTrue(isServiceDarkFeatureEnabled(CohortEngineRestConstants.DARK_LAUNCHED_MEASURE_EVALUATION));
    final String RESOURCE = getUrlBase() + CohortServiceAPISpec.CREATE_DELETE_EVALUATION_PATH;
    FhirContext fhirContext = FhirContext.forR4();
    IParser parser = fhirContext.newJsonParser().setPrettyPrint(true);
    Library library = TestHelper.getTemplateLibrary();
    Identifier identifier = new Identifier().setValue("measure-identifier").setSystem("http://ibm.com/health/test");
    Measure measure = TestHelper.getTemplateMeasure(library);
    measure.setIdentifier(Arrays.asList(identifier));
    ByteArrayOutputStream baos = new ByteArrayOutputStream();
    TestHelper.createMeasureArtifact(baos, parser, measure, library);
    // Files.write( baos.toByteArray(), new File("target/test_measure_v1_0_0.zip"));
    Map<String, Parameter> parameterOverrides = new HashMap<>();
    parameterOverrides.put("Measurement Period", new IntervalParameter(new DateParameter("2019-07-04"), true, new DateParameter("2020-07-04"), true));
    MeasureEvaluation requestData = new MeasureEvaluation();
    requestData.setDataServerConfig(dataServerConfig);
    requestData.setTerminologyServerConfig(termServerConfig);
    // This is a patient ID that is assumed to exist in the target FHIR server
    requestData.setPatientId(VALID_PATIENT_ID);
    requestData.setMeasureContext(new MeasureContext(null, parameterOverrides, new com.ibm.cohort.engine.measure.Identifier(identifier.getSystem(), identifier.getValue()), measure.getVersion()));
    requestData.setEvidenceOptions(new MeasureEvidenceOptions(false, MeasureEvidenceOptions.DefineReturnOptions.NONE));
    ObjectMapper om = new ObjectMapper();
    System.out.println(om.writeValueAsString(requestData));
    RequestSpecification request = buildBaseRequest(new Headers()).queryParam(CohortEngineRestHandler.VERSION, ServiceBuildConstants.DATE).multiPart(CohortEngineRestHandler.REQUEST_DATA_PART, requestData, "application/json").multiPart(CohortEngineRestHandler.MEASURE_PART, "test_measure_v1_0_0.zip", new ByteArrayInputStream(baos.toByteArray()));
    ValidatableResponse response = request.post(RESOURCE, getServiceVersion()).then();
    ValidatableResponse vr = runSuccessValidation(response, ContentType.JSON, HttpStatus.SC_OK);
    String expected = getJsonFromFile(ServiceAPIGlobalSpec.EXP_FOLDER_TYPE, "measure_evaluation_exp.json");
    String actual = vr.extract().asString();
    assertMeasureReportEquals(parser, expected, actual, false);
}

Example 23 with Period

use of org.hl7.fhir.r4.model.Period in project quality-measure-and-cohort-service by Alvearie.

the class CqlTemporalTests method getEncounter.

public Encounter getEncounter(int year, int month, int day) {
    Encounter encounter = new Encounter();
    Period encounterPeriod = new Period();
    Calendar c = Calendar.getInstance();
    c.set(year, month - 1, day);
    Date encounterDate = c.getTime();
    encounterPeriod.setStart(encounterDate);
    encounterPeriod.setEnd(encounterDate);
    encounter.setPeriod(encounterPeriod);
    return encounter;
}

Example 24 with Period

use of org.hl7.fhir.r4.model.Period in project quality-measure-and-cohort-service by Alvearie.

the class CQLToFHIRMeasureReportHelper method getFhirTypeForInterval.

private static IBaseDatatype getFhirTypeForInterval(Interval interval) {
    Object low = interval.getLow();
    Object high = interval.getHigh();
    if (low instanceof DateTime) {
        // Handle DateTime conversion to force UTC timezone
        Period period = new Period();
        period.setStartElement(createDateTimeType((DateTime) low));
        period.setEndElement(createDateTimeType((DateTime) high));
        return period;
    } else if (low instanceof Quantity) {
        return converter.toFhirRange(interval);
    } else {
        logger.warn("Support not implemented for Interval parameters of type {} on a MeasureReport", low.getClass());
        return null;
    }
}

Example 25 with Period

use of org.hl7.fhir.r4.model.Period in project quality-measure-and-cohort-service by Alvearie.

the class IdentifierBuilderTest method testBuilder.

@Test
public void testBuilder() {
    String system = "TEST SYSTEM";
    String code = "TEST CODE";
    String display = "TEST DISPLAY";
    String value = "TEST VALUE";
    Coding coding = new Coding(system, code, display);
    CodeableConcept type = new CodeableConcept(coding);
    Period period = new Period();
    period.setStart(new Date());
    period.setEnd(new Date());
    Reference assigner = new Reference("TEST REFERENCE");
    Identifier identifier = new IdentifierBuilder().buildUse(IdentifierUse.OFFICIAL).buildSystem(system).buildType(type).buildPeriod(period).buildValue(value).buildAssigner(assigner).build();
    assertEquals(IdentifierUse.OFFICIAL, identifier.getUse());
    assertEquals(system, identifier.getSystem());
    assertEquals(type, identifier.getType());
    assertEquals(period, identifier.getPeriod());
    assertEquals(value, identifier.getValue());
    assertEquals(assigner, identifier.getAssigner());
}