use of org.hl7.fhir.r4.model.ValueSet.ConceptReferenceComponent in project bunsen by cerner.
the class ValueSets method expandValuesIterator.
private static Iterator<Value> expandValuesIterator(ValueSet valueSet) {
List<Value> values = new ArrayList<>();
ValueSetComposeComponent compose = valueSet.getCompose();
for (ConceptSetComponent inclusion : compose.getInclude()) {
for (ConceptReferenceComponent concept : inclusion.getConcept()) {
Value value = new Value();
value.setValueSetUri(valueSet.getUrl());
value.setValueSetVersion(valueSet.getVersion());
value.setSystem(inclusion.getSystem());
value.setVersion(inclusion.getVersion());
value.setValue(concept.getCode());
values.add(value);
}
}
return values.iterator();
}
use of org.hl7.fhir.r4.model.ValueSet.ConceptReferenceComponent in project bunsen by cerner.
the class ValueSets method addToValueSet.
/**
* Adds the given values to the given value set instance.
*/
private void addToValueSet(ValueSet valueSet, Dataset<Value> values) {
ValueSetComposeComponent composeComponent = valueSet.getCompose();
ConceptSetComponent currentInclusion = null;
ConceptReferenceComponent concept = null;
List<Value> sortedValues = values.sort("system", "version", "value").collectAsList();
// Workaround for the decoder producing an immutable array by replacing it with a mutable one
composeComponent.setInclude(new ArrayList<>(composeComponent.getInclude()));
for (Value value : sortedValues) {
if (currentInclusion == null || !value.getSystem().equals(currentInclusion.getSystem()) || !value.getVersion().equals(currentInclusion.getVersion())) {
// Find a matching inclusion
for (ConceptSetComponent candidate : composeComponent.getInclude()) {
if (value.getSystem().equals(candidate.getSystem()) && value.getVersion().equals(candidate.getVersion())) {
currentInclusion = candidate;
// Workaround for the decoder producing an immutable array by replacing it with a
// mutable one
currentInclusion.setConcept(new ArrayList<>(currentInclusion.getConcept()));
}
}
// No matching inclusion found, so add one
if (currentInclusion == null) {
currentInclusion = composeComponent.addInclude();
currentInclusion.setSystem(value.getSystem());
currentInclusion.setVersion(value.getVersion());
concept = null;
}
}
// Create concept if not exists
if (concept == null || !value.getValue().equals(concept.getCode())) {
concept = currentInclusion.addConcept();
concept.setCode(value.getValue());
}
}
}
use of org.hl7.fhir.r4.model.ValueSet.ConceptReferenceComponent in project bunsen by cerner.
the class ValueSets method addToValueSet.
@Override
protected void addToValueSet(ValueSet valueSet, Dataset<Value> values) {
ValueSetComposeComponent composeComponent = valueSet.getCompose();
ConceptSetComponent currentInclusion = null;
ConceptReferenceComponent concept = null;
List<Value> sortedValues = values.sort("system", "version", "value").collectAsList();
// Workaround for the decoder producing an immutable array by replacing it with a mutable one
composeComponent.setInclude(new ArrayList<>(composeComponent.getInclude()));
for (Value value : sortedValues) {
if (currentInclusion == null || !value.getSystem().equals(currentInclusion.getSystem()) || !value.getVersion().equals(currentInclusion.getVersion())) {
// Find a matching inclusion
for (ConceptSetComponent candidate : composeComponent.getInclude()) {
if (value.getSystem().equals(candidate.getSystem()) && value.getVersion().equals(candidate.getVersion())) {
currentInclusion = candidate;
// Workaround for the decoder producing an immutable array by replacing it with a
// mutable one
currentInclusion.setConcept(new ArrayList<>(currentInclusion.getConcept()));
}
}
// No matching inclusion found, so add one
if (currentInclusion == null) {
currentInclusion = composeComponent.addInclude();
currentInclusion.setSystem(value.getSystem());
currentInclusion.setVersion(value.getVersion());
concept = null;
}
}
// Create concept if not exists
if (concept == null || !value.getValue().equals(concept.getCode())) {
concept = currentInclusion.addConcept();
concept.setCode(value.getValue());
}
}
}
use of org.hl7.fhir.r4.model.ValueSet.ConceptReferenceComponent in project bunsen by cerner.
the class ValueSets method expandValuesIterator.
private static Iterator<Value> expandValuesIterator(ValueSet valueSet) {
List<Value> values = new ArrayList<>();
ValueSetComposeComponent compose = valueSet.getCompose();
for (ConceptSetComponent inclusion : compose.getInclude()) {
for (ConceptReferenceComponent concept : inclusion.getConcept()) {
Value value = new Value();
value.setValueSetUri(valueSet.getUrl());
value.setValueSetVersion(valueSet.getVersion());
value.setSystem(inclusion.getSystem());
value.setVersion(inclusion.getVersion());
value.setValue(concept.getCode());
values.add(value);
}
}
return values.iterator();
}
use of org.hl7.fhir.r4.model.ValueSet.ConceptReferenceComponent in project synthea by synthetichealth.
the class ValidationSupportR4 method validateCodeUsingValueSet.
private CodeValidationResult validateCodeUsingValueSet(String theCodeSystem, String theCode, String theDisplay, String theValueSetUrl) {
CodeValidationResult result = null;
if (theValueSetUrl == null || theValueSetUrl.isEmpty()) {
result = new CodeValidationResult();
result.setCode(theCode);
result.setDisplay(theDisplay);
result.setMessage("No ValueSet!");
result.setSeverity(IssueSeverity.FATAL);
} else {
ValueSet vs = (ValueSet) this.fetchValueSet(theValueSetUrl);
if (vs.hasCompose()) {
ValueSetComposeComponent vscc = vs.getCompose();
if (vscc.hasInclude()) {
for (ConceptSetComponent csc : vscc.getInclude()) {
if ((theCodeSystem == null || (theCodeSystem != null && theCodeSystem.equals(csc.getSystem())))) {
for (ConceptReferenceComponent crc : csc.getConcept()) {
if (crc.hasCode() && crc.getCode().equals(theCode)) {
result = new CodeValidationResult();
result.setCode(theCode);
result.setDisplay(theDisplay);
result.setMessage("Included");
result.setSeverity(IssueSeverity.INFORMATION);
}
}
}
}
}
if (result == null && vscc.hasExclude()) {
for (ConceptSetComponent csc : vscc.getExclude()) {
if ((theCodeSystem == null || (theCodeSystem != null && theCodeSystem.equals(csc.getSystem())))) {
for (ConceptReferenceComponent crc : csc.getConcept()) {
if (crc.hasCode() && crc.getCode().equals(theCode)) {
result = new CodeValidationResult();
result.setCode(theCode);
result.setDisplay(theDisplay);
result.setMessage("Excluded");
result.setSeverity(IssueSeverity.ERROR);
}
}
}
}
}
}
if (result == null && vs.hasExpansion()) {
ValueSetExpansionComponent vsec = vs.getExpansion();
if (vsec.hasContains()) {
for (ValueSetExpansionContainsComponent vsecc : vsec.getContains()) {
if (theCodeSystem == null || (theCodeSystem != null && theCodeSystem.equals(vsecc.getSystem()))) {
if (vsecc.getCode().equals(theCode)) {
result = new CodeValidationResult();
result.setCode(theCode);
result.setDisplay(theDisplay);
result.setMessage("Included");
result.setSeverity(IssueSeverity.INFORMATION);
}
}
}
}
}
}
return result;
}
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