Examples with ValueSetExpansionParameterComponent org.hl7.fhir.r4.model.ValueSet.ValueSetExpansionParameterComponent used on opensource projects

Example 16 with ValueSetExpansionParameterComponent

use of org.hl7.fhir.r4.model.ValueSet.ValueSetExpansionParameterComponent in project org.hl7.fhir.core by hapifhir.

the class ValueSetExpanderSimple method addFragmentWarning.

private void addFragmentWarning(ValueSetExpansionComponent exp, CodeSystem cs) {
    String url = cs.getVersionedUrl();
    for (ValueSetExpansionParameterComponent p : exp.getParameter()) {
        if ("fragment".equals(p.getName()) && p.hasValueUriType() && url.equals(p.getValue().primitiveValue())) {
            return;
        }
    }
    exp.addParameter().setName("fragment").setValue(new UriType(url));
}

Example 17 with ValueSetExpansionParameterComponent

use of org.hl7.fhir.r4.model.ValueSet.ValueSetExpansionParameterComponent in project org.hl7.fhir.core by hapifhir.

the class ValueSetExpanderSimple method doServerIncludeCodes.

private void doServerIncludeCodes(ConceptSetComponent inc, boolean heirarchical, ValueSetExpansionComponent exp, List<ValueSet> imports, Parameters expParams, List<Extension> extensions) throws FHIRException {
    ValueSetExpansionOutcome vso = context.expandVS(inc, heirarchical);
    if (vso.getError() != null) {
        throw failTSE("Unable to expand imported value set: " + vso.getError());
    }
    ValueSet vs = vso.getValueset();
    if (vs.hasVersion()) {
        if (!existsInParams(exp.getParameter(), "version", new UriType(vs.getUrl() + "|" + vs.getVersion()))) {
            exp.getParameter().add(new ValueSetExpansionParameterComponent().setName("version").setValue(new UriType(vs.getUrl() + "|" + vs.getVersion())));
        }
    }
    for (ValueSetExpansionParameterComponent p : vso.getValueset().getExpansion().getParameter()) {
        if (!existsInParams(exp.getParameter(), p.getName(), p.getValue())) {
            exp.getParameter().add(p);
        }
    }
    for (Extension ex : vs.getExpansion().getExtension()) {
        if (Utilities.existsInList(ex.getUrl(), ToolingExtensions.EXT_EXP_TOOCOSTLY, "http://hl7.org/fhir/StructureDefinition/valueset-unclosed")) {
            if (!hasExtension(extensions, ex.getUrl())) {
                extensions.add(ex);
            }
        }
    }
    for (ValueSetExpansionContainsComponent cc : vs.getExpansion().getContains()) {
        addCodeAndDescendents(cc, null, expParams, imports);
    }
}

Example 18 with ValueSetExpansionParameterComponent

use of org.hl7.fhir.r4.model.ValueSet.ValueSetExpansionParameterComponent in project org.hl7.fhir.core by hapifhir.

the class ValueSetExpanderSimple method excludeCodes.

private void excludeCodes(ConceptSetComponent exc, List<ValueSetExpansionParameterComponent> params, String ctxt) throws FHIRException {
    exc.checkNoModifiers("Compose.exclude", "expanding");
    if (exc.hasSystem() && exc.getConcept().size() == 0 && exc.getFilter().size() == 0) {
        excludeSystems.add(exc.getSystem());
    }
    if (exc.hasValueSet())
        throw fail("Processing Value set references in exclude is not yet done in " + ctxt);
    // importValueSet(imp.getValue(), params, expParams);
    CodeSystem cs = context.fetchCodeSystem(exc.getSystem());
    if ((cs == null || cs.getContent() != CodeSystemContentMode.COMPLETE) && context.supportsSystem(exc.getSystem())) {
        ValueSetExpansionOutcome vse = context.expandVS(exc, false);
        ValueSet valueset = vse.getValueset();
        if (valueset == null)
            throw failTSE("Error Expanding ValueSet: " + vse.getError());
        excludeCodes(valueset.getExpansion(), params);
        return;
    }
    for (ConceptReferenceComponent c : exc.getConcept()) {
        excludeCode(exc.getSystem(), c.getCode());
    }
    if (exc.getFilter().size() > 0)
        throw fail("not done yet - multiple filters");
}

Example 19 with ValueSetExpansionParameterComponent

use of org.hl7.fhir.r4.model.ValueSet.ValueSetExpansionParameterComponent in project org.hl7.fhir.core by hapifhir.

the class ValueSetExpanderSimple method doInternalIncludeCodes.

public void doInternalIncludeCodes(ConceptSetComponent inc, List<ValueSetExpansionParameterComponent> params, Parameters expParams, List<ValueSet> imports, CodeSystem cs) throws NoTerminologyServiceException, TerminologyServiceException, FHIRException {
    if (cs == null) {
        if (context.isNoTerminologyServer())
            throw new NoTerminologyServiceException("unable to find code system " + inc.getSystem().toString());
        else
            throw new TerminologyServiceException("unable to find code system " + inc.getSystem().toString());
    }
    cs.checkNoModifiers("Code System", "expanding");
    if (cs.getContent() != CodeSystemContentMode.COMPLETE)
        throw new TerminologyServiceException("Code system " + inc.getSystem().toString() + " is incomplete");
    if (cs.hasVersion())
        if (!existsInParams(params, "version", new UriType(cs.getUrl() + "|" + cs.getVersion())))
            params.add(new ValueSetExpansionParameterComponent().setName("version").setValue(new UriType(cs.getUrl() + "|" + cs.getVersion())));
    if (inc.getConcept().size() == 0 && inc.getFilter().size() == 0) {
        // special case - add all the code system
        for (ConceptDefinitionComponent def : cs.getConcept()) {
            addCodeAndDescendents(cs, inc.getSystem(), def, null, expParams, imports, null);
        }
    }
    if (!inc.getConcept().isEmpty()) {
        canBeHeirarchy = false;
        for (ConceptReferenceComponent c : inc.getConcept()) {
            c.checkNoModifiers("Code in Code System", "expanding");
            addCode(inc.getSystem(), c.getCode(), Utilities.noString(c.getDisplay()) ? getCodeDisplay(cs, c.getCode()) : c.getDisplay(), null, convertDesignations(c.getDesignation()), expParams, false, CodeSystemUtilities.isInactive(cs, c.getCode()), imports);
        }
    }
    if (inc.getFilter().size() > 1) {
        // which will bt the case if we get around to supporting this
        canBeHeirarchy = false;
        // need to and them, and this isn't done yet. But this shouldn't arise in non loinc and snomed value sets
        throw new TerminologyServiceException("Multiple filters not handled yet");
    }
    if (inc.getFilter().size() == 1) {
        ConceptSetFilterComponent fc = inc.getFilter().get(0);
        if ("concept".equals(fc.getProperty()) && fc.getOp() == FilterOperator.ISA) {
            // special: all codes in the target code system under the value
            ConceptDefinitionComponent def = getConceptForCode(cs.getConcept(), fc.getValue());
            if (def == null)
                throw new TerminologyServiceException("Code '" + fc.getValue() + "' not found in system '" + inc.getSystem() + "'");
            addCodeAndDescendents(cs, inc.getSystem(), def, null, expParams, imports, null);
        } else if ("concept".equals(fc.getProperty()) && fc.getOp() == FilterOperator.ISNOTA) {
            // special: all codes in the target code system that are not under the value
            ConceptDefinitionComponent defEx = getConceptForCode(cs.getConcept(), fc.getValue());
            if (defEx == null)
                throw new TerminologyServiceException("Code '" + fc.getValue() + "' not found in system '" + inc.getSystem() + "'");
            for (ConceptDefinitionComponent def : cs.getConcept()) {
                addCodeAndDescendents(cs, inc.getSystem(), def, null, expParams, imports, defEx);
            }
        } else if ("concept".equals(fc.getProperty()) && fc.getOp() == FilterOperator.DESCENDENTOF) {
            // special: all codes in the target code system under the value
            ConceptDefinitionComponent def = getConceptForCode(cs.getConcept(), fc.getValue());
            if (def == null)
                throw new TerminologyServiceException("Code '" + fc.getValue() + "' not found in system '" + inc.getSystem() + "'");
            for (ConceptDefinitionComponent c : def.getConcept()) addCodeAndDescendents(cs, inc.getSystem(), c, null, expParams, imports, null);
        } else if ("display".equals(fc.getProperty()) && fc.getOp() == FilterOperator.EQUAL) {
            // gg; note: wtf is this: if the filter is display=v, look up the code 'v', and see if it's diplsay is 'v'?
            canBeHeirarchy = false;
            ConceptDefinitionComponent def = getConceptForCode(cs.getConcept(), fc.getValue());
            if (def != null) {
                if (isNotBlank(def.getDisplay()) && isNotBlank(fc.getValue())) {
                    if (def.getDisplay().contains(fc.getValue())) {
                        addCode(inc.getSystem(), def.getCode(), def.getDisplay(), null, def.getDesignation(), expParams, CodeSystemUtilities.isNotSelectable(cs, def), CodeSystemUtilities.isInactive(cs, def), imports);
                    }
                }
            }
        } else
            throw new NotImplementedException("Search by property[" + fc.getProperty() + "] and op[" + fc.getOp() + "] is not supported yet");
    }
}

Example 20 with ValueSetExpansionParameterComponent

use of org.hl7.fhir.r4.model.ValueSet.ValueSetExpansionParameterComponent in project org.hl7.fhir.core by hapifhir.

the class ValueSetExpanderSimple method handleCompose.

private void handleCompose(ValueSetComposeComponent compose, List<ValueSetExpansionParameterComponent> params, Parameters expParams, String ctxt) throws ETooCostly, FileNotFoundException, IOException, FHIRException {
    compose.checkNoModifiers("ValueSet.compose", "expanding");
    // Exclude comes first because we build up a map of things to exclude
    for (ConceptSetComponent inc : compose.getExclude()) excludeCodes(inc, params, ctxt);
    canBeHeirarchy = !expParams.getParameterBool("excludeNested") && excludeKeys.isEmpty() && excludeSystems.isEmpty();
    boolean first = true;
    for (ConceptSetComponent inc : compose.getInclude()) {
        if (first == true)
            first = false;
        else
            canBeHeirarchy = false;
        includeCodes(inc, params, expParams, canBeHeirarchy);
    }
}