Examples with PROCEDURE org.hl7.fhir.r4.model.codesystems.ResourceTypes.PROCEDURE used on opensource projects

Example 26 with PROCEDURE

use of org.hl7.fhir.r4.model.codesystems.ResourceTypes.PROCEDURE in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeProcedureProcedurePerformerComponent.

protected void composeProcedureProcedurePerformerComponent(Complex parent, String parentType, String name, Procedure.ProcedurePerformerComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "performer", name, element, index);
    if (element.hasActor())
        composeReference(t, "Procedure", "actor", element.getActor(), -1);
    if (element.hasRole())
        composeCodeableConcept(t, "Procedure", "role", element.getRole(), -1);
}

Example 27 with PROCEDURE

use of org.hl7.fhir.r4.model.codesystems.ResourceTypes.PROCEDURE in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeProcedure.

protected void composeProcedure(Complex parent, String parentType, String name, Procedure element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeDomainResource(t, "Procedure", name, element, index);
    for (int i = 0; i < element.getIdentifier().size(); i++) composeIdentifier(t, "Procedure", "identifier", element.getIdentifier().get(i), i);
    if (element.hasSubject())
        composeReference(t, "Procedure", "subject", element.getSubject(), -1);
    if (element.hasStatusElement())
        composeEnum(t, "Procedure", "status", element.getStatusElement(), -1);
    if (element.hasCategory())
        composeCodeableConcept(t, "Procedure", "category", element.getCategory(), -1);
    if (element.hasCode())
        composeCodeableConcept(t, "Procedure", "code", element.getCode(), -1);
    if (element.hasNotPerformedElement())
        composeBoolean(t, "Procedure", "notPerformed", element.getNotPerformedElement(), -1);
    for (int i = 0; i < element.getReasonNotPerformed().size(); i++) composeCodeableConcept(t, "Procedure", "reasonNotPerformed", element.getReasonNotPerformed().get(i), i);
    for (int i = 0; i < element.getBodySite().size(); i++) composeCodeableConcept(t, "Procedure", "bodySite", element.getBodySite().get(i), i);
    if (element.hasReason())
        composeType(t, "Procedure", "reason", element.getReason(), -1);
    for (int i = 0; i < element.getPerformer().size(); i++) composeProcedureProcedurePerformerComponent(t, "Procedure", "performer", element.getPerformer().get(i), i);
    if (element.hasPerformed())
        composeType(t, "Procedure", "performed", element.getPerformed(), -1);
    if (element.hasEncounter())
        composeReference(t, "Procedure", "encounter", element.getEncounter(), -1);
    if (element.hasLocation())
        composeReference(t, "Procedure", "location", element.getLocation(), -1);
    if (element.hasOutcome())
        composeCodeableConcept(t, "Procedure", "outcome", element.getOutcome(), -1);
    for (int i = 0; i < element.getReport().size(); i++) composeReference(t, "Procedure", "report", element.getReport().get(i), i);
    for (int i = 0; i < element.getComplication().size(); i++) composeCodeableConcept(t, "Procedure", "complication", element.getComplication().get(i), i);
    for (int i = 0; i < element.getFollowUp().size(); i++) composeCodeableConcept(t, "Procedure", "followUp", element.getFollowUp().get(i), i);
    if (element.hasRequest())
        composeReference(t, "Procedure", "request", element.getRequest(), -1);
    for (int i = 0; i < element.getNotes().size(); i++) composeAnnotation(t, "Procedure", "notes", element.getNotes().get(i), i);
    for (int i = 0; i < element.getFocalDevice().size(); i++) composeProcedureProcedureFocalDeviceComponent(t, "Procedure", "focalDevice", element.getFocalDevice().get(i), i);
    for (int i = 0; i < element.getUsed().size(); i++) composeReference(t, "Procedure", "used", element.getUsed().get(i), i);
}

Example 28 with PROCEDURE

use of org.hl7.fhir.r4.model.codesystems.ResourceTypes.PROCEDURE in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeExplanationOfBenefitProcedureComponent.

protected void composeExplanationOfBenefitProcedureComponent(Complex parent, String parentType, String name, ExplanationOfBenefit.ProcedureComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "procedure", name, element, index);
    if (element.hasSequenceElement())
        composePositiveInt(t, "ExplanationOfBenefit", "sequence", element.getSequenceElement(), -1);
    if (element.hasDateElement())
        composeDateTime(t, "ExplanationOfBenefit", "date", element.getDateElement(), -1);
    if (element.hasProcedure())
        composeType(t, "ExplanationOfBenefit", "procedure", element.getProcedure(), -1);
}

Example 29 with PROCEDURE

use of org.hl7.fhir.r4.model.codesystems.ResourceTypes.PROCEDURE in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilitiesTests method execute.

public void execute(String[] args) throws FileNotFoundException, IOException, FHIRException {
    System.out.println("loading context");
    context = SimpleWorkerContext.fromPack(Utilities.path(root, "validation.zip"));
    comp = new ProfileComparer(context);
    compare("patient-daf-dafpatient.profile.xml", "patient-qicore-qicore-patient.profile.xml");
    compare("encounter-daf-dafencounter.profile.xml", "encounter-qicore-qicore-encounter.profile.xml");
    compare("substance-daf-dafsubstance.profile.xml", "substance-qicore-qicore-substance.profile.xml");
    compare("medication-daf-dafmedication.profile.xml", "medication-qicore-qicore-medication.profile.xml");
    compare("procedure-daf-dafprocedure.profile.xml", "procedure-qicore-qicore-procedure.profile.xml");
    compare("familymemberhistory-daf-daffamilymemberhistory.profile.xml", "familymemberhistory-qicore-qicore-familymemberhistory.profile.xml");
    compare("immunization-daf-dafimmunization.profile.xml", "immunization-qicore-qicore-immunization.profile.xml");
    compare("condition-daf-dafcondition.profile.xml", "condition-qicore-qicore-condition.profile.xml");
    compare("allergyintolerance-daf-dafallergyintolerance.profile.xml", "allergyintolerance-qicore-qicore-allergyintolerance.profile.xml");
    compare("medicationadministration-daf-dafmedicationadministration.profile.xml", "medicationadministration-qicore-qicore-medicationadministration.profile.xml");
    compare("medicationdispense-daf-dafmedicationdispense.profile.xml", "medicationdispense-qicore-qicore-medicationdispense.profile.xml");
    compare("medicationprescription-daf-dafmedicationprescription.profile.xml", "medicationprescription-qicore-qicore-medicationprescription.profile.xml");
    compare("medicationstatement-daf-dafmedicationstatement.profile.xml", "medicationstatement-qicore-qicore-medicationstatement.profile.xml");
    compare("observation-daf-smokingstatus-dafsmokingstatus.profile.xml", "observation-qicore-qicore-observation.profile.xml");
    compare("observation-daf-vitalsigns-dafvitalsigns.profile.xml", "observation-qicore-qicore-observation.profile.xml");
    // compare("observation-daf-results-dafresultobs.profile.xml", "observation-qicore-qicore-observation.profile.xml");
    // compare("diagnosticorder-daf-dafdiagnosticorder.profile.xml", "diagnosticorder-qicore-qicore-diagnosticorder.profile.xml");
    // compare("diagnosticreport-daf-dafdiagnosticreport.profile.xml", "diagnosticreport-qicore-qicore-diagnosticreport.profile.xml");
    System.out.println("processing output");
    for (ProfileComparison outcome : comp.getComparisons()) {
        if (outcome.getSubset() != null)
            new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "intersection-" + outcome.getId() + ".xml")), outcome.getSubset());
        if (outcome.getSuperset() != null)
            new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "union-" + outcome.getId() + ".xml")), outcome.getSuperset());
        System.out.println("\r\n" + outcome.getId() + ": Comparison of " + outcome.getLeft().getUrl() + " and " + outcome.getRight().getUrl());
        for (ValidationMessage vm : outcome.getMessages()) if (vm.getLevel() == IssueSeverity.INFORMATION)
            System.out.println(vm.summary());
        for (ValidationMessage vm : outcome.getMessages()) if (vm.getLevel() == IssueSeverity.WARNING)
            System.out.println(vm.summary());
        for (ValidationMessage vm : outcome.getMessages()) if (vm.getLevel() == IssueSeverity.ERROR)
            System.out.println(vm.summary());
        for (ValidationMessage vm : outcome.getMessages()) if (vm.getLevel() == IssueSeverity.FATAL)
            System.out.println(vm.summary());
        System.out.println("done. " + Integer.toString(outcome.getMessages().size()) + " messages");
        System.out.println("=================================================================");
    }
}

Example 30 with PROCEDURE

use of org.hl7.fhir.r4.model.codesystems.ResourceTypes.PROCEDURE in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeProcedure.

protected void composeProcedure(Complex parent, String parentType, String name, Procedure element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeDomainResource(t, "Procedure", name, element, index);
    for (int i = 0; i < element.getIdentifier().size(); i++) composeIdentifier(t, "Procedure", "identifier", element.getIdentifier().get(i), i);
    for (int i = 0; i < element.getInstantiatesCanonical().size(); i++) composeCanonical(t, "Procedure", "instantiatesCanonical", element.getInstantiatesCanonical().get(i), i);
    for (int i = 0; i < element.getInstantiatesUri().size(); i++) composeUri(t, "Procedure", "instantiatesUri", element.getInstantiatesUri().get(i), i);
    for (int i = 0; i < element.getBasedOn().size(); i++) composeReference(t, "Procedure", "basedOn", element.getBasedOn().get(i), i);
    for (int i = 0; i < element.getPartOf().size(); i++) composeReference(t, "Procedure", "partOf", element.getPartOf().get(i), i);
    if (element.hasStatusElement())
        composeEnum(t, "Procedure", "status", element.getStatusElement(), -1);
    if (element.hasStatusReason())
        composeCodeableConcept(t, "Procedure", "statusReason", element.getStatusReason(), -1);
    if (element.hasCategory())
        composeCodeableConcept(t, "Procedure", "category", element.getCategory(), -1);
    if (element.hasCode())
        composeCodeableConcept(t, "Procedure", "code", element.getCode(), -1);
    if (element.hasSubject())
        composeReference(t, "Procedure", "subject", element.getSubject(), -1);
    if (element.hasEncounter())
        composeReference(t, "Procedure", "encounter", element.getEncounter(), -1);
    if (element.hasPerformed())
        composeType(t, "Procedure", "performed", element.getPerformed(), -1);
    if (element.hasRecorder())
        composeReference(t, "Procedure", "recorder", element.getRecorder(), -1);
    if (element.hasAsserter())
        composeReference(t, "Procedure", "asserter", element.getAsserter(), -1);
    for (int i = 0; i < element.getPerformer().size(); i++) composeProcedureProcedurePerformerComponent(t, "Procedure", "performer", element.getPerformer().get(i), i);
    if (element.hasLocation())
        composeReference(t, "Procedure", "location", element.getLocation(), -1);
    for (int i = 0; i < element.getReasonCode().size(); i++) composeCodeableConcept(t, "Procedure", "reasonCode", element.getReasonCode().get(i), i);
    for (int i = 0; i < element.getReasonReference().size(); i++) composeReference(t, "Procedure", "reasonReference", element.getReasonReference().get(i), i);
    for (int i = 0; i < element.getBodySite().size(); i++) composeCodeableConcept(t, "Procedure", "bodySite", element.getBodySite().get(i), i);
    if (element.hasOutcome())
        composeCodeableConcept(t, "Procedure", "outcome", element.getOutcome(), -1);
    for (int i = 0; i < element.getReport().size(); i++) composeReference(t, "Procedure", "report", element.getReport().get(i), i);
    for (int i = 0; i < element.getComplication().size(); i++) composeCodeableConcept(t, "Procedure", "complication", element.getComplication().get(i), i);
    for (int i = 0; i < element.getComplicationDetail().size(); i++) composeReference(t, "Procedure", "complicationDetail", element.getComplicationDetail().get(i), i);
    for (int i = 0; i < element.getFollowUp().size(); i++) composeCodeableConcept(t, "Procedure", "followUp", element.getFollowUp().get(i), i);
    for (int i = 0; i < element.getNote().size(); i++) composeAnnotation(t, "Procedure", "note", element.getNote().get(i), i);
    for (int i = 0; i < element.getFocalDevice().size(); i++) composeProcedureProcedureFocalDeviceComponent(t, "Procedure", "focalDevice", element.getFocalDevice().get(i), i);
    for (int i = 0; i < element.getUsedReference().size(); i++) composeReference(t, "Procedure", "usedReference", element.getUsedReference().get(i), i);
    for (int i = 0; i < element.getUsedCode().size(); i++) composeCodeableConcept(t, "Procedure", "usedCode", element.getUsedCode().get(i), i);
}