Examples with IdType org.hl7.fhir.r4b.model.IdType used on opensource projects

Example 46 with IdType

use of org.hl7.fhir.r4b.model.IdType in project elexis-server by elexis.

the class FamilyMemberHistoryResourceProvider method createFamilyMemberHistory.

@Create
public MethodOutcome createFamilyMemberHistory(@ResourceParam FamilyMemberHistory familyMemberHistory) {
    MethodOutcome outcome = new MethodOutcome();
    Optional<IFamilyMemberHistory> exists = getTransformer().getLocalObject(familyMemberHistory);
    if (exists.isPresent()) {
        outcome.setCreated(false);
        outcome.setId(new IdType(familyMemberHistory.getId()));
    } else {
        Optional<IFamilyMemberHistory> created = getTransformer().createLocalObject(familyMemberHistory);
        if (created.isPresent()) {
            outcome.setCreated(true);
            outcome.setId(new IdType(created.get().getId()));
        } else {
            throw new InternalErrorException("Creation failed");
        }
    }
    return outcome;
}

Example 47 with IdType

use of org.hl7.fhir.r4b.model.IdType in project elexis-server by elexis.

the class MedicationRequestResourceProvider method findMedicationsByPatient.

@Search()
public List<MedicationRequest> findMedicationsByPatient(@RequiredParam(name = MedicationRequest.SP_PATIENT) IdType thePatientId) {
    if (thePatientId != null && !thePatientId.isEmpty()) {
        Optional<IPatient> patient = modelService.load(thePatientId.getIdPart(), IPatient.class);
        if (patient.isPresent()) {
            if (patient.get().isPatient()) {
                IQuery<IPrescription> query = modelService.getQuery(IPrescription.class);
                query.and(ModelPackage.Literals.IPRESCRIPTION__PATIENT, COMPARATOR.EQUALS, patient.get());
                // TODO
                // qbe.add(Prescription_.rezeptID, JPAQuery.QUERY.EQUALS, null);
                List<IPrescription> prescriptions = query.execute();
                if (prescriptions != null && !prescriptions.isEmpty()) {
                    List<MedicationRequest> ret = new ArrayList<MedicationRequest>();
                    for (IPrescription prescription : prescriptions) {
                        Optional<MedicationRequest> fhirMedicationOrder = getTransformer().getFhirObject(prescription);
                        fhirMedicationOrder.ifPresent(fmo -> ret.add(fmo));
                    }
                    return ret;
                }
            }
        }
    }
    return null;
}

Example 48 with IdType

use of org.hl7.fhir.r4b.model.IdType in project elexis-server by elexis.

the class EncounterTest method createEncounter.

@Test
public void createEncounter() {
    Condition problem = new Condition();
    problem.setCode(new CodeableConcept().addCoding(new Coding("http://hl7.org/fhir/sid/icpc-2", "A04", "Müdigkeit")));
    problem.setSubject(new Reference("Patient/" + AllTests.getTestDatabaseInitializer().getPatient().getId()));
    problem.addCategory().addCoding(new Coding(ConditionCategory.PROBLEMLISTITEM.getSystem(), ConditionCategory.PROBLEMLISTITEM.toCode(), ConditionCategory.PROBLEMLISTITEM.getDisplay()));
    MethodOutcome problemOutcome = client.create().resource(problem).execute();
    Encounter encounter = new Encounter();
    EncounterParticipantComponent participant = new EncounterParticipantComponent();
    participant.setIndividual(new Reference("Practitioner/" + TestDatabaseInitializer.getMandant().getId()));
    encounter.addParticipant(participant);
    encounter.setPeriod(new Period().setStart(AllTests.getDate(LocalDate.now().atStartOfDay())).setEnd(AllTests.getDate(LocalDate.now().atTime(23, 59, 59))));
    encounter.setSubject(new Reference("Patient/" + AllTests.getTestDatabaseInitializer().getPatient().getId()));
    encounter.addDiagnosis().setCondition(new Reference(new IdType(problem.getResourceType().name(), problemOutcome.getId().getIdPart())));
    encounter.addType(new CodeableConcept().addCoding(new Coding("www.elexis.info/encounter/type", "struct", "structured enconter")));
    MethodOutcome outcome = client.create().resource(encounter).execute();
    assertNotNull(outcome);
    assertTrue(outcome.getCreated());
    assertNotNull(outcome.getId());
    // add subjective to the encounter
    Observation subjective = new Observation();
    Narrative narrative = new Narrative();
    String divEncodedText = "Subjective\nTest".replaceAll("(\r\n|\r|\n)", "<br />");
    narrative.setDivAsString(divEncodedText);
    subjective.setText(narrative);
    subjective.setSubject(new Reference("Patient/" + AllTests.getTestDatabaseInitializer().getPatient().getId()));
    subjective.addCategory().addCoding(new Coding(IdentifierSystem.ELEXIS_SOAP.getSystem(), ObservationCategory.SOAP_SUBJECTIVE.getCode(), ObservationCategory.SOAP_SUBJECTIVE.getLocalized()));
    subjective.setEncounter(new Reference(new IdType(encounter.getResourceType().name(), encounter.getId())));
    MethodOutcome subjectiveOutcome = client.create().resource(subjective).execute();
    assertTrue(subjectiveOutcome.getCreated());
    Encounter readEncounter = client.read().resource(Encounter.class).withId(outcome.getId()).execute();
    assertNotNull(readEncounter);
    assertEquals(outcome.getId().getIdPart(), readEncounter.getIdElement().getIdPart());
    assertEquals(encounter.getPeriod().getStart(), readEncounter.getPeriod().getStart());
}

Example 49 with IdType

use of org.hl7.fhir.r4b.model.IdType in project elexis-server by elexis.

the class ServiceRequestTest method createServiceRequest.

@Test
public void createServiceRequest() {
    Condition problem = new Condition();
    problem.setCode(new CodeableConcept().addCoding(new Coding("http://hl7.org/fhir/sid/icpc-2", "A04", "Müdigkeit")));
    problem.setSubject(new Reference("Patient/" + AllTests.getTestDatabaseInitializer().getPatient().getId()));
    problem.addCategory().addCoding(new Coding(ConditionCategory.PROBLEMLISTITEM.getSystem(), ConditionCategory.PROBLEMLISTITEM.toCode(), ConditionCategory.PROBLEMLISTITEM.getDisplay()));
    MethodOutcome problemOutcome = client.create().resource(problem).execute();
    Encounter encounter = new Encounter();
    EncounterParticipantComponent participant = new EncounterParticipantComponent();
    participant.setIndividual(new Reference("Practitioner/" + TestDatabaseInitializer.getMandant().getId()));
    encounter.addParticipant(participant);
    encounter.setPeriod(new Period().setStart(AllTests.getDate(LocalDate.of(2016, Month.DECEMBER, 1).atStartOfDay())).setEnd(AllTests.getDate(LocalDate.of(2016, Month.DECEMBER, 1).atTime(23, 59, 59))));
    encounter.setSubject(new Reference("Patient/" + AllTests.getTestDatabaseInitializer().getPatient().getId()));
    encounter.addDiagnosis().setCondition(new Reference(new IdType(problem.getResourceType().name(), problemOutcome.getId().getIdPart())));
    encounter.addType(new CodeableConcept().addCoding(new Coding("www.elexis.info/encounter/type", "struct", "structured enconter")));
    MethodOutcome encounterOutcome = client.create().resource(encounter).execute();
    assertNotNull(encounterOutcome);
    assertTrue(encounterOutcome.getCreated());
    assertNotNull(encounterOutcome.getId());
    // add subjective to the encounter
    Observation subjective = new Observation();
    Narrative narrative = new Narrative();
    String divEncodedText = "Subjective\nTest".replaceAll("(\r\n|\r|\n)", "<br />");
    narrative.setDivAsString(divEncodedText);
    subjective.setText(narrative);
    subjective.setSubject(new Reference("Patient/" + AllTests.getTestDatabaseInitializer().getPatient().getId()));
    subjective.addCategory().addCoding(new Coding(IdentifierSystem.ELEXIS_SOAP.getSystem(), ObservationCategory.SOAP_SUBJECTIVE.getCode(), ObservationCategory.SOAP_SUBJECTIVE.getLocalized()));
    subjective.setEncounter(new Reference(new IdType(encounter.getResourceType().name(), encounterOutcome.getId().getIdPart())));
    MethodOutcome subjectiveOutcome = client.create().resource(subjective).execute();
    assertTrue(subjectiveOutcome.getCreated());
    // add procedure request to encounter
    ServiceRequest serviceRequest = new ServiceRequest();
    narrative = new Narrative();
    divEncodedText = "Procedure\nTest".replaceAll("(\r\n|\r|\n)", "<br />");
    narrative.setDivAsString(divEncodedText);
    serviceRequest.setText(narrative);
    serviceRequest.setSubject(new Reference("Patient/" + AllTests.getTestDatabaseInitializer().getPatient().getId()));
    serviceRequest.setEncounter(new Reference(new IdType(encounter.getResourceType().name(), encounterOutcome.getId().getIdPart())));
    MethodOutcome outcome = client.create().resource(serviceRequest).execute();
    assertNotNull(outcome);
    assertTrue(outcome.getCreated());
    assertNotNull(outcome.getId());
    ServiceRequest readServiceRequest = client.read().resource(ServiceRequest.class).withId(outcome.getId()).execute();
    assertNotNull(readServiceRequest);
    assertEquals(outcome.getId().getIdPart(), readServiceRequest.getIdElement().getIdPart());
    assertEquals(serviceRequest.getSubject().getReferenceElement().getIdPart(), readServiceRequest.getSubject().getReferenceElement().getIdPart());
    assertEquals(serviceRequest.getEncounter().getReferenceElement().getIdPart(), readServiceRequest.getEncounter().getReferenceElement().getIdPart());
    assertTrue(readServiceRequest.getText().getDivAsString().contains("Test"));
    // check if the consultation text has been updated
    // search by patient and date
    Bundle results = client.search().forResource(Encounter.class).where(Encounter.PATIENT.hasId(AllTests.getTestDatabaseInitializer().getPatient().getId())).and(Encounter.DATE.exactly().day(AllTests.getDate(LocalDate.of(2016, Month.DECEMBER, 1).atStartOfDay()))).returnBundle(Bundle.class).execute();
    assertNotNull(results);
    List<BundleEntryComponent> entries = results.getEntry();
    assertFalse(entries.isEmpty());
    Encounter readEncounter = (Encounter) entries.get(0).getResource();
    assertNotNull(readEncounter);
    assertEquals(readEncounter.getIdElement().getIdPart(), encounterOutcome.getId().getIdPart());
    List<Identifier> identifier = readEncounter.getIdentifier();
    String consultationId = null;
    for (Identifier id : identifier) {
        if (id.getSystem().equals(IdentifierSystem.ELEXIS_CONSID.getSystem())) {
            consultationId = id.getValue();
        }
    }
    assertNotNull(consultationId);
    Optional<IEncounter> behandlung = AllTests.getModelService().load(consultationId, IEncounter.class);
    assertTrue(behandlung.isPresent());
    assertTrue(behandlung.get().getVersionedEntry().getHead().contains("Procedure"));
}

Example 50 with IdType

use of org.hl7.fhir.r4b.model.IdType in project openmrs-module-fhir2 by openmrs.

the class AllergyIntoleranceFhirResourceProviderTest method updateAllergyIntolerance_shouldUpdateRequestedAllergyIntolerance.

@Test
public void updateAllergyIntolerance_shouldUpdateRequestedAllergyIntolerance() {
    when(service.update(ALLERGY_UUID, allergyIntolerance)).thenReturn(allergyIntolerance);
    MethodOutcome result = resourceProvider.updateAllergy(new IdType().setValue(ALLERGY_UUID), allergyIntolerance);
    assertThat(result, notNullValue());
    assertThat(result.getResource(), equalTo(allergyIntolerance));
}