use of org.hl7.fhir.r4b.model.RelatedArtifact in project org.hl7.fhir.core by hapifhir.
the class RdfParser method composeResearchStudy.
protected void composeResearchStudy(Complex parent, String parentType, String name, ResearchStudy element, int index) {
if (element == null)
return;
Complex t;
if (Utilities.noString(parentType))
t = parent;
else {
t = parent.predicate("fhir:" + parentType + '.' + name);
}
composeDomainResource(t, "ResearchStudy", name, element, index);
for (int i = 0; i < element.getIdentifier().size(); i++) composeIdentifier(t, "ResearchStudy", "identifier", element.getIdentifier().get(i), i);
if (element.hasTitleElement())
composeString(t, "ResearchStudy", "title", element.getTitleElement(), -1);
for (int i = 0; i < element.getProtocol().size(); i++) composeReference(t, "ResearchStudy", "protocol", element.getProtocol().get(i), i);
for (int i = 0; i < element.getPartOf().size(); i++) composeReference(t, "ResearchStudy", "partOf", element.getPartOf().get(i), i);
if (element.hasStatusElement())
composeEnum(t, "ResearchStudy", "status", element.getStatusElement(), -1);
if (element.hasPrimaryPurposeType())
composeCodeableConcept(t, "ResearchStudy", "primaryPurposeType", element.getPrimaryPurposeType(), -1);
if (element.hasPhase())
composeCodeableConcept(t, "ResearchStudy", "phase", element.getPhase(), -1);
for (int i = 0; i < element.getCategory().size(); i++) composeCodeableConcept(t, "ResearchStudy", "category", element.getCategory().get(i), i);
for (int i = 0; i < element.getFocus().size(); i++) composeCodeableConcept(t, "ResearchStudy", "focus", element.getFocus().get(i), i);
for (int i = 0; i < element.getCondition().size(); i++) composeCodeableConcept(t, "ResearchStudy", "condition", element.getCondition().get(i), i);
for (int i = 0; i < element.getContact().size(); i++) composeContactDetail(t, "ResearchStudy", "contact", element.getContact().get(i), i);
for (int i = 0; i < element.getRelatedArtifact().size(); i++) composeRelatedArtifact(t, "ResearchStudy", "relatedArtifact", element.getRelatedArtifact().get(i), i);
for (int i = 0; i < element.getKeyword().size(); i++) composeCodeableConcept(t, "ResearchStudy", "keyword", element.getKeyword().get(i), i);
for (int i = 0; i < element.getLocation().size(); i++) composeCodeableConcept(t, "ResearchStudy", "location", element.getLocation().get(i), i);
if (element.hasDescriptionElement())
composeMarkdown(t, "ResearchStudy", "description", element.getDescriptionElement(), -1);
for (int i = 0; i < element.getEnrollment().size(); i++) composeReference(t, "ResearchStudy", "enrollment", element.getEnrollment().get(i), i);
if (element.hasPeriod())
composePeriod(t, "ResearchStudy", "period", element.getPeriod(), -1);
if (element.hasSponsor())
composeReference(t, "ResearchStudy", "sponsor", element.getSponsor(), -1);
if (element.hasPrincipalInvestigator())
composeReference(t, "ResearchStudy", "principalInvestigator", element.getPrincipalInvestigator(), -1);
for (int i = 0; i < element.getSite().size(); i++) composeReference(t, "ResearchStudy", "site", element.getSite().get(i), i);
if (element.hasReasonStopped())
composeCodeableConcept(t, "ResearchStudy", "reasonStopped", element.getReasonStopped(), -1);
for (int i = 0; i < element.getNote().size(); i++) composeAnnotation(t, "ResearchStudy", "note", element.getNote().get(i), i);
for (int i = 0; i < element.getArm().size(); i++) composeResearchStudyResearchStudyArmComponent(t, "ResearchStudy", "arm", element.getArm().get(i), i);
for (int i = 0; i < element.getObjective().size(); i++) composeResearchStudyResearchStudyObjectiveComponent(t, "ResearchStudy", "objective", element.getObjective().get(i), i);
}
use of org.hl7.fhir.r4b.model.RelatedArtifact in project org.hl7.fhir.core by hapifhir.
the class RdfParser method composeEffectEvidenceSynthesis.
protected void composeEffectEvidenceSynthesis(Complex parent, String parentType, String name, EffectEvidenceSynthesis element, int index) {
if (element == null)
return;
Complex t;
if (Utilities.noString(parentType))
t = parent;
else {
t = parent.predicate("fhir:" + parentType + '.' + name);
}
composeDomainResource(t, "EffectEvidenceSynthesis", name, element, index);
if (element.hasUrlElement())
composeUri(t, "EffectEvidenceSynthesis", "url", element.getUrlElement(), -1);
for (int i = 0; i < element.getIdentifier().size(); i++) composeIdentifier(t, "EffectEvidenceSynthesis", "identifier", element.getIdentifier().get(i), i);
if (element.hasVersionElement())
composeString(t, "EffectEvidenceSynthesis", "version", element.getVersionElement(), -1);
if (element.hasNameElement())
composeString(t, "EffectEvidenceSynthesis", "name", element.getNameElement(), -1);
if (element.hasTitleElement())
composeString(t, "EffectEvidenceSynthesis", "title", element.getTitleElement(), -1);
if (element.hasStatusElement())
composeEnum(t, "EffectEvidenceSynthesis", "status", element.getStatusElement(), -1);
if (element.hasDateElement())
composeDateTime(t, "EffectEvidenceSynthesis", "date", element.getDateElement(), -1);
if (element.hasPublisherElement())
composeString(t, "EffectEvidenceSynthesis", "publisher", element.getPublisherElement(), -1);
for (int i = 0; i < element.getContact().size(); i++) composeContactDetail(t, "EffectEvidenceSynthesis", "contact", element.getContact().get(i), i);
if (element.hasDescriptionElement())
composeMarkdown(t, "EffectEvidenceSynthesis", "description", element.getDescriptionElement(), -1);
for (int i = 0; i < element.getNote().size(); i++) composeAnnotation(t, "EffectEvidenceSynthesis", "note", element.getNote().get(i), i);
for (int i = 0; i < element.getUseContext().size(); i++) composeUsageContext(t, "EffectEvidenceSynthesis", "useContext", element.getUseContext().get(i), i);
for (int i = 0; i < element.getJurisdiction().size(); i++) composeCodeableConcept(t, "EffectEvidenceSynthesis", "jurisdiction", element.getJurisdiction().get(i), i);
if (element.hasCopyrightElement())
composeMarkdown(t, "EffectEvidenceSynthesis", "copyright", element.getCopyrightElement(), -1);
if (element.hasApprovalDateElement())
composeDate(t, "EffectEvidenceSynthesis", "approvalDate", element.getApprovalDateElement(), -1);
if (element.hasLastReviewDateElement())
composeDate(t, "EffectEvidenceSynthesis", "lastReviewDate", element.getLastReviewDateElement(), -1);
if (element.hasEffectivePeriod())
composePeriod(t, "EffectEvidenceSynthesis", "effectivePeriod", element.getEffectivePeriod(), -1);
for (int i = 0; i < element.getTopic().size(); i++) composeCodeableConcept(t, "EffectEvidenceSynthesis", "topic", element.getTopic().get(i), i);
for (int i = 0; i < element.getAuthor().size(); i++) composeContactDetail(t, "EffectEvidenceSynthesis", "author", element.getAuthor().get(i), i);
for (int i = 0; i < element.getEditor().size(); i++) composeContactDetail(t, "EffectEvidenceSynthesis", "editor", element.getEditor().get(i), i);
for (int i = 0; i < element.getReviewer().size(); i++) composeContactDetail(t, "EffectEvidenceSynthesis", "reviewer", element.getReviewer().get(i), i);
for (int i = 0; i < element.getEndorser().size(); i++) composeContactDetail(t, "EffectEvidenceSynthesis", "endorser", element.getEndorser().get(i), i);
for (int i = 0; i < element.getRelatedArtifact().size(); i++) composeRelatedArtifact(t, "EffectEvidenceSynthesis", "relatedArtifact", element.getRelatedArtifact().get(i), i);
if (element.hasSynthesisType())
composeCodeableConcept(t, "EffectEvidenceSynthesis", "synthesisType", element.getSynthesisType(), -1);
if (element.hasStudyType())
composeCodeableConcept(t, "EffectEvidenceSynthesis", "studyType", element.getStudyType(), -1);
if (element.hasPopulation())
composeReference(t, "EffectEvidenceSynthesis", "population", element.getPopulation(), -1);
if (element.hasExposure())
composeReference(t, "EffectEvidenceSynthesis", "exposure", element.getExposure(), -1);
if (element.hasExposureAlternative())
composeReference(t, "EffectEvidenceSynthesis", "exposureAlternative", element.getExposureAlternative(), -1);
if (element.hasOutcome())
composeReference(t, "EffectEvidenceSynthesis", "outcome", element.getOutcome(), -1);
if (element.hasSampleSize())
composeEffectEvidenceSynthesisEffectEvidenceSynthesisSampleSizeComponent(t, "EffectEvidenceSynthesis", "sampleSize", element.getSampleSize(), -1);
for (int i = 0; i < element.getResultsByExposure().size(); i++) composeEffectEvidenceSynthesisEffectEvidenceSynthesisResultsByExposureComponent(t, "EffectEvidenceSynthesis", "resultsByExposure", element.getResultsByExposure().get(i), i);
for (int i = 0; i < element.getEffectEstimate().size(); i++) composeEffectEvidenceSynthesisEffectEvidenceSynthesisEffectEstimateComponent(t, "EffectEvidenceSynthesis", "effectEstimate", element.getEffectEstimate().get(i), i);
for (int i = 0; i < element.getCertainty().size(); i++) composeEffectEvidenceSynthesisEffectEvidenceSynthesisCertaintyComponent(t, "EffectEvidenceSynthesis", "certainty", element.getCertainty().get(i), i);
}
use of org.hl7.fhir.r4b.model.RelatedArtifact in project org.hl7.fhir.core by hapifhir.
the class LibraryRenderer method render.
public boolean render(XhtmlNode x, ResourceWrapper lib) throws FHIRFormatError, DefinitionException, IOException {
PropertyWrapper authors = lib.getChildByName("author");
PropertyWrapper editors = lib.getChildByName("editor");
PropertyWrapper reviewers = lib.getChildByName("reviewer");
PropertyWrapper endorsers = lib.getChildByName("endorser");
if ((authors != null && authors.hasValues()) || (editors != null && editors.hasValues()) || (reviewers != null && reviewers.hasValues()) || (endorsers != null && endorsers.hasValues())) {
boolean email = hasCT(authors, "email") || hasCT(editors, "email") || hasCT(reviewers, "email") || hasCT(endorsers, "email");
boolean phone = hasCT(authors, "phone") || hasCT(editors, "phone") || hasCT(reviewers, "phone") || hasCT(endorsers, "phone");
boolean url = hasCT(authors, "url") || hasCT(editors, "url") || hasCT(reviewers, "url") || hasCT(endorsers, "url");
x.h2().tx("Participants");
XhtmlNode t = x.table("grid");
if (authors != null) {
for (BaseWrapper cd : authors.getValues()) {
participantRow(t, "Author", cd, email, phone, url);
}
}
if (authors != null) {
for (BaseWrapper cd : editors.getValues()) {
participantRow(t, "Editor", cd, email, phone, url);
}
}
if (authors != null) {
for (BaseWrapper cd : reviewers.getValues()) {
participantRow(t, "Reviewer", cd, email, phone, url);
}
}
if (authors != null) {
for (BaseWrapper cd : endorsers.getValues()) {
participantRow(t, "Endorser", cd, email, phone, url);
}
}
}
PropertyWrapper artifacts = lib.getChildByName("relatedArtifact");
if (artifacts != null && artifacts.hasValues()) {
x.h2().tx("Related Artifacts");
XhtmlNode t = x.table("grid");
boolean label = false;
boolean display = false;
boolean citation = false;
for (BaseWrapper ra : artifacts.getValues()) {
label = label || ra.has("label");
display = display || ra.has("display");
citation = citation || ra.has("citation");
}
for (BaseWrapper ra : artifacts.getValues()) {
renderArtifact(t, ra, lib, label, display, citation);
}
}
PropertyWrapper parameters = lib.getChildByName("parameter");
if (parameters != null && parameters.hasValues()) {
x.h2().tx("Parameters");
XhtmlNode t = x.table("grid");
boolean doco = false;
for (BaseWrapper p : parameters.getValues()) {
doco = doco || p.has("documentation");
}
for (BaseWrapper p : parameters.getValues()) {
renderParameter(t, p, doco);
}
}
PropertyWrapper dataRequirements = lib.getChildByName("dataRequirement");
if (dataRequirements != null && dataRequirements.hasValues()) {
x.h2().tx("Data Requirements");
for (BaseWrapper p : dataRequirements.getValues()) {
renderDataRequirement(x, (DataRequirement) p.getBase());
}
}
PropertyWrapper contents = lib.getChildByName("content");
if (contents != null) {
x.h2().tx("Contents");
boolean isCql = false;
int counter = 0;
for (BaseWrapper p : contents.getValues()) {
Attachment att = (Attachment) p.getBase();
renderAttachment(x, att, isCql, counter, lib.getId());
isCql = isCql || (att.hasContentType() && att.getContentType().startsWith("text/cql"));
counter++;
}
}
return false;
}
use of org.hl7.fhir.r4b.model.RelatedArtifact in project CRD by HL7-DaVinci.
the class QuestionnairePackageOperation method addLibraryDependencies.
/*
* Recursively add all of the libraries dependencies related by the "depends-on" type.
*/
private void addLibraryDependencies(Library library, List<String> bundleContents, Bundle questionnaireBundle) {
List<RelatedArtifact> relatedArtifacts = library.getRelatedArtifact();
for (RelatedArtifact relatedArtifact : relatedArtifacts) {
// only add the depends-on artifacts
if (relatedArtifact.getType() == RelatedArtifactType.DEPENDSON) {
String relatedArtifactReferenceString = relatedArtifact.getResource();
String[] referenceParts = relatedArtifactReferenceString.split("/");
String id = referenceParts[1];
Resource referencedLibraryResource = null;
// look in the map and retrieve it instead of looking it up on disk if found
if (resources.containsKey(id)) {
referencedLibraryResource = resources.get(id);
} else {
referencedLibraryResource = fileStore.getFhirResourceByIdAsFhirResource("R4", "Library", id, baseUrl);
resources.put(id, referencedLibraryResource);
}
// only add the library if not already in the bundle
if (!bundleContents.contains(referencedLibraryResource.getId())) {
BundleEntryComponent referencedLibraryBundleEntry = new BundleEntryComponent();
referencedLibraryBundleEntry.setResource(referencedLibraryResource);
questionnaireBundle.addEntry(referencedLibraryBundleEntry);
bundleContents.add(referencedLibraryResource.getId());
// recurse through the libraries...
addLibraryDependencies((Library) referencedLibraryResource, bundleContents, questionnaireBundle);
}
}
}
// grab all of the ValueSets in the DataRequirement
List<DataRequirement> dataRequirements = library.getDataRequirement();
for (DataRequirement dataRequirement : dataRequirements) {
List<DataRequirement.DataRequirementCodeFilterComponent> codeFilters = dataRequirement.getCodeFilter();
for (DataRequirement.DataRequirementCodeFilterComponent codeFilter : codeFilters) {
String valueSetUrl = codeFilter.getValueSet();
Resource valueSetResource = null;
// look in the map and retrieve it instead of looking it up on disk if found
if (resources.containsKey(valueSetUrl)) {
valueSetResource = resources.get(valueSetUrl);
} else {
valueSetResource = fileStore.getFhirResourceByUrlAsFhirResource("R4", "ValueSet", valueSetUrl, baseUrl);
resources.put(valueSetUrl, valueSetResource);
}
addResourceToBundle(valueSetResource, bundleContents, questionnaireBundle);
}
}
}
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