Examples with Timing org.hl7.fhir.r4b.model.Timing used on opensource projects

Example 66 with Timing

use of org.hl7.fhir.r4b.model.Timing in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method displayLeaf.

private boolean displayLeaf(ResourceWrapper res, BaseWrapper ew, ElementDefinition defn, XhtmlNode x, String name, boolean showCodeDetails) throws FHIRException, UnsupportedEncodingException, IOException {
    if (ew == null)
        return false;
    Base e = ew.getBase();
    Map<String, String> displayHints = readDisplayHints(defn);
    if (name.endsWith("[x]"))
        name = name.substring(0, name.length() - 3);
    if (!showCodeDetails && e instanceof PrimitiveType && isDefault(displayHints, ((PrimitiveType) e)))
        return false;
    if (e instanceof StringType) {
        x.addText(name + ": " + ((StringType) e).getValue());
        return true;
    } else if (e instanceof CodeType) {
        x.addText(name + ": " + ((CodeType) e).getValue());
        return true;
    } else if (e instanceof IdType) {
        x.addText(name + ": " + ((IdType) e).getValue());
        return true;
    } else if (e instanceof DateTimeType) {
        x.addText(name + ": " + ((DateTimeType) e).toHumanDisplay());
        return true;
    } else if (e instanceof InstantType) {
        x.addText(name + ": " + ((InstantType) e).toHumanDisplay());
        return true;
    } else if (e instanceof Extension) {
        x.addText("Extensions: todo");
        return true;
    } else if (e instanceof org.hl7.fhir.dstu2016may.model.DateType) {
        x.addText(name + ": " + ((org.hl7.fhir.dstu2016may.model.DateType) e).toHumanDisplay());
        return true;
    } else if (e instanceof Enumeration) {
        // todo: look up a display name if there is one
        x.addText(((Enumeration<?>) e).getValue().toString());
        return true;
    } else if (e instanceof BooleanType) {
        if (((BooleanType) e).getValue()) {
            x.addText(name);
            return true;
        }
    } else if (e instanceof CodeableConcept) {
        renderCodeableConcept((CodeableConcept) e, x, showCodeDetails);
        return true;
    } else if (e instanceof Coding) {
        renderCoding((Coding) e, x, showCodeDetails);
        return true;
    } else if (e instanceof Annotation) {
        renderAnnotation((Annotation) e, x, showCodeDetails);
        return true;
    } else if (e instanceof org.hl7.fhir.dstu2016may.model.IntegerType) {
        x.addText(Integer.toString(((org.hl7.fhir.dstu2016may.model.IntegerType) e).getValue()));
        return true;
    } else if (e instanceof org.hl7.fhir.dstu2016may.model.DecimalType) {
        x.addText(((org.hl7.fhir.dstu2016may.model.DecimalType) e).getValue().toString());
        return true;
    } else if (e instanceof Identifier) {
        renderIdentifier((Identifier) e, x);
        return true;
    } else if (e instanceof HumanName) {
        renderHumanName((HumanName) e, x);
        return true;
    } else if (e instanceof SampledData) {
        renderSampledData((SampledData) e, x);
        return true;
    } else if (e instanceof Address) {
        renderAddress((Address) e, x);
        return true;
    } else if (e instanceof ContactPoint) {
        renderContactPoint((ContactPoint) e, x);
        return true;
    } else if (e instanceof Timing) {
        renderTiming((Timing) e, x);
        return true;
    } else if (e instanceof Quantity) {
        renderQuantity((Quantity) e, x, showCodeDetails);
        return true;
    } else if (e instanceof Ratio) {
        renderQuantity(((Ratio) e).getNumerator(), x, showCodeDetails);
        x.addText("/");
        renderQuantity(((Ratio) e).getDenominator(), x, showCodeDetails);
        return true;
    } else if (e instanceof Period) {
        Period p = (Period) e;
        x.addText(name + ": ");
        x.addText(!p.hasStart() ? "??" : p.getStartElement().toHumanDisplay());
        x.addText(" --> ");
        x.addText(!p.hasEnd() ? "(ongoing)" : p.getEndElement().toHumanDisplay());
        return true;
    } else if (e instanceof Reference) {
        Reference r = (Reference) e;
        if (r.hasDisplayElement())
            x.addText(r.getDisplay());
        else if (r.hasReferenceElement()) {
            ResourceWithReference tr = resolveReference(res, r.getReference());
            // getDisplayForReference(tr.getReference()));
            x.addText(tr == null ? r.getReference() : "????");
        } else
            x.addText("??");
        return true;
    } else if (e instanceof Narrative) {
        return false;
    } else if (e instanceof Resource) {
        return false;
    } else if (!(e instanceof Attachment))
        throw new NotImplementedException("type " + e.getClass().getName() + " not handled yet");
    return false;
}

Example 67 with Timing

use of org.hl7.fhir.r4b.model.Timing in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeTriggerDefinition.

protected void composeTriggerDefinition(Complex parent, String parentType, String name, TriggerDefinition element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeElement(t, "TriggerDefinition", name, element, index);
    if (element.hasTypeElement())
        composeEnum(t, "TriggerDefinition", "type", element.getTypeElement(), -1);
    if (element.hasNameElement())
        composeString(t, "TriggerDefinition", "name", element.getNameElement(), -1);
    if (element.hasTiming())
        composeType(t, "TriggerDefinition", "timing", element.getTiming(), -1);
    for (int i = 0; i < element.getData().size(); i++) composeDataRequirement(t, "TriggerDefinition", "data", element.getData().get(i), i);
    if (element.hasCondition())
        composeExpression(t, "TriggerDefinition", "condition", element.getCondition(), -1);
}

Example 68 with Timing

use of org.hl7.fhir.r4b.model.Timing in project org.hl7.fhir.core by hapifhir.

the class DataRenderer method displayTiming.

private String displayTiming(Timing s) throws FHIRException {
    CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
    if (s.hasCode())
        b.append("Code: " + displayCodeableConcept(s.getCode()));
    if (s.getEvent().size() > 0) {
        CommaSeparatedStringBuilder c = new CommaSeparatedStringBuilder();
        for (DateTimeType p : s.getEvent()) {
            if (p.hasValue()) {
                c.append(displayDateTime(p));
            } else if (!renderExpression(c, p)) {
                c.append("??");
            }
        }
        b.append("Events: " + c.toString());
    }
    if (s.hasRepeat()) {
        TimingRepeatComponent rep = s.getRepeat();
        if (rep.hasBoundsPeriod() && rep.getBoundsPeriod().hasStart())
            b.append("Starting " + displayDateTime(rep.getBoundsPeriod().getStartElement()));
        if (rep.hasCount())
            b.append("Count " + Integer.toString(rep.getCount()) + " times");
        if (rep.hasDuration())
            b.append("Duration " + rep.getDuration().toPlainString() + displayTimeUnits(rep.getPeriodUnit()));
        if (rep.hasWhen()) {
            String st = "";
            if (rep.hasOffset()) {
                st = Integer.toString(rep.getOffset()) + "min ";
            }
            b.append("Do " + st);
            for (Enumeration<EventTiming> wh : rep.getWhen()) b.append(displayEventCode(wh.getValue()));
        } else {
            String st = "";
            if (!rep.hasFrequency() || (!rep.hasFrequencyMax() && rep.getFrequency() == 1))
                st = "Once";
            else {
                st = Integer.toString(rep.getFrequency());
                if (rep.hasFrequencyMax())
                    st = st + "-" + Integer.toString(rep.getFrequency());
            }
            if (rep.hasPeriod()) {
                st = st + " per " + rep.getPeriod().toPlainString();
                if (rep.hasPeriodMax())
                    st = st + "-" + rep.getPeriodMax().toPlainString();
                st = st + " " + displayTimeUnits(rep.getPeriodUnit());
            }
            b.append("Do " + st);
        }
        if (rep.hasBoundsPeriod() && rep.getBoundsPeriod().hasEnd())
            b.append("Until " + displayDateTime(rep.getBoundsPeriod().getEndElement()));
    }
    return b.toString();
}

Example 69 with Timing

use of org.hl7.fhir.r4b.model.Timing in project eCRNow by drajer-health.

the class CdaMedicationGenerator method generateMedicationSection.

public static String generateMedicationSection(R4FhirData data, LaunchDetails details) {
    StringBuilder sb = new StringBuilder(2000);
    List<Medication> medList = data.getMedicationList();
    List<MedicationStatement> meds = data.getMedications();
    List<MedicationAdministration> medAdms = data.getMedicationAdministrations();
    List<MedicationRequest> medReqs = getValidMedicationRequests(data, medList);
    if ((meds != null && !meds.isEmpty()) || (medAdms != null && !medAdms.isEmpty()) || (medReqs != null && !medReqs.isEmpty())) {
        // Generate the component and section end tags
        sb.append(CdaGeneratorUtils.getXmlForStartElement(CdaGeneratorConstants.COMP_EL_NAME));
        sb.append(CdaGeneratorUtils.getXmlForStartElement(CdaGeneratorConstants.SECTION_EL_NAME));
        sb.append(CdaGeneratorUtils.getXmlForTemplateId(CdaGeneratorConstants.MED_ADM_SEC_TEMPLATE_ID));
        sb.append(CdaGeneratorUtils.getXmlForTemplateId(CdaGeneratorConstants.MED_ADM_SEC_TEMPLATE_ID, CdaGeneratorConstants.MED_SEC_TEMPLATE_ID_EXT));
        sb.append(CdaGeneratorUtils.getXmlForCD(CdaGeneratorConstants.CODE_EL_NAME, CdaGeneratorConstants.MED_ADM_SEC_CODE, CdaGeneratorConstants.LOINC_CODESYSTEM_OID, CdaGeneratorConstants.LOINC_CODESYSTEM_NAME, CdaGeneratorConstants.MED_ADM_SEC_NAME));
        // add Title
        sb.append(CdaGeneratorUtils.getXmlForText(CdaGeneratorConstants.TITLE_EL_NAME, CdaGeneratorConstants.MED_ADM_SEC_TITLE));
        // add Narrative Text
        sb.append(CdaGeneratorUtils.getXmlForStartElement(CdaGeneratorConstants.TEXT_EL_NAME));
        // Create Table Header.
        List<String> list = new ArrayList<>();
        list.add(CdaGeneratorConstants.MED_TABLE_COL_1_TITLE);
        list.add(CdaGeneratorConstants.MED_TABLE_COL_2_TITLE);
        sb.append(CdaGeneratorUtils.getXmlForTableHeader(list, CdaGeneratorConstants.TABLE_BORDER, CdaGeneratorConstants.TABLE_WIDTH));
        // add Table Body
        sb.append(CdaGeneratorUtils.getXmlForStartElement(CdaGeneratorConstants.TABLE_BODY_EL_NAME));
        // add Body Rows
        int rowNum = 1;
        StringBuilder medEntries = new StringBuilder();
        for (MedicationStatement med : meds) {
            String medDisplayName = CdaGeneratorConstants.UNKNOWN_VALUE;
            if (med.getMedication() != null) {
                medDisplayName = CdaFhirUtilities.getStringForMedicationType(med);
            }
            String dt = null;
            if (med.getEffective() != null) {
                dt = CdaFhirUtilities.getStringForType(med.getEffective());
            }
            Map<String, String> bodyvals = new LinkedHashMap<>();
            bodyvals.put(CdaGeneratorConstants.MED_TABLE_COL_1_BODY_CONTENT, medDisplayName);
            bodyvals.put(CdaGeneratorConstants.MED_TABLE_COL_2_BODY_CONTENT, dt);
            sb.append(CdaGeneratorUtils.addTableRow(bodyvals, rowNum));
            // TODO: ++rowNum or rowNum++
            ++rowNum;
            // Create the Med Entry for the Medication Statement.
            String medstatus = "";
            if (med.getStatus() != null) {
                medstatus = CdaFhirUtilities.getStatusCodeForFhirMedStatusCodes(med.getStatus().toString());
            } else {
                medstatus = COMPLETED;
            }
            Dosage dosage = null;
            if (med.getDosageFirstRep() != null)
                dosage = med.getDosageFirstRep();
            medEntries.append(getEntryForMedication(med.getId(), med.getMedication(), med.getEffective(), medstatus, dosage, details, null, null, CdaGeneratorConstants.MOOD_CODE_DEF, med));
        }
        // Add Medication Administration
        for (MedicationAdministration medAdm : medAdms) {
            String medDisplayName = CdaGeneratorConstants.UNKNOWN_VALUE;
            if (medAdm.getMedication() != null) {
                medDisplayName = CdaFhirUtilities.getStringForMedicationType(medAdm);
            }
            String dt = null;
            if (medAdm.getEffective() != null) {
                dt = CdaFhirUtilities.getStringForType(medAdm.getEffective());
            }
            Map<String, String> bodyvals = new HashMap<>();
            bodyvals.put(CdaGeneratorConstants.MED_TABLE_COL_1_BODY_CONTENT, medDisplayName);
            bodyvals.put(CdaGeneratorConstants.MED_TABLE_COL_2_BODY_CONTENT, dt);
            sb.append(CdaGeneratorUtils.addTableRow(bodyvals, rowNum));
            // TODO: ++rowNum or rowNum++
            ++rowNum;
            // Create the Med Entry for the Medication Statement.
            String medstatus = "";
            if (medAdm.getStatus() != null) {
                medstatus = CdaFhirUtilities.getStatusCodeForFhirMedStatusCodes(medAdm.getStatus());
            } else {
                medstatus = COMPLETED;
            }
            Quantity dose = null;
            if (medAdm.getDosage() != null && medAdm.getDosage().getDose() != null)
                dose = medAdm.getDosage().getDose();
            medEntries.append(getEntryForMedication(medAdm.getId(), medAdm.getMedication(), medAdm.getEffective(), medstatus, null, details, dose, null, CdaGeneratorConstants.MOOD_CODE_DEF, medAdm));
        }
        // Add Medication Requests
        for (MedicationRequest medReq : medReqs) {
            String medDisplayName = CdaGeneratorConstants.UNKNOWN_VALUE;
            if (medReq.getMedication() != null) {
                medDisplayName = CdaFhirUtilities.getStringForMedicationType(medReq);
            }
            DateTimeType startDate = null;
            Dosage dosage = null;
            if (medReq.getDosageInstructionFirstRep() != null && medReq.getDosageInstructionFirstRep().getTiming() != null) {
                dosage = medReq.getDosageInstructionFirstRep();
                Timing t = medReq.getDosageInstructionFirstRep().getTiming();
                if (t != null && t.getRepeat() != null && t.getRepeat().getBoundsPeriod() != null) {
                    startDate = t.getRepeat().getBoundsPeriod().getStartElement();
                }
            }
            String dt = CdaGeneratorConstants.UNKNOWN_VALUE;
            if (startDate != null) {
                dt = CdaFhirUtilities.getDisplayStringForDateTimeType(startDate);
            } else {
                logger.error(" Dosage field does not have a valid period either due to datetime or timezone being null ");
            }
            Map<String, String> bodyvals = new HashMap<>();
            bodyvals.put(CdaGeneratorConstants.MED_TABLE_COL_1_BODY_CONTENT, medDisplayName);
            bodyvals.put(CdaGeneratorConstants.MED_TABLE_COL_2_BODY_CONTENT, dt);
            sb.append(CdaGeneratorUtils.addTableRow(bodyvals, rowNum));
            // TODO: ++rowNum or rowNum++
            ++rowNum;
            // Create the Med Entry for the Medication Request.
            String medstatus = "";
            String moodCode = CdaGeneratorConstants.MOOD_CODE_INT;
            if (medReq.getStatus() != null) {
                medstatus = CdaFhirUtilities.getStatusCodeForFhirMedStatusCodes(medReq.getStatus().toString());
                if (medstatus.equalsIgnoreCase(COMPLETED)) {
                    moodCode = CdaGeneratorConstants.MOOD_CODE_DEF;
                }
            } else {
                medstatus = "active";
            }
            medEntries.append(getEntryForMedication(medReq.getId(), medReq.getMedication(), null, medstatus, dosage, details, null, startDate, moodCode, medReq));
        }
        sb.append(CdaGeneratorUtils.getXmlForEndElement(CdaGeneratorConstants.TABLE_BODY_EL_NAME));
        // End Table.
        sb.append(CdaGeneratorUtils.getXmlForEndElement(CdaGeneratorConstants.TABLE_EL_NAME));
        sb.append(CdaGeneratorUtils.getXmlForEndElement(CdaGeneratorConstants.TEXT_EL_NAME));
        // Add Medication Entries
        sb.append(medEntries);
        // Complete the section end tags.
        sb.append(CdaGeneratorUtils.getXmlForEndElement(CdaGeneratorConstants.SECTION_EL_NAME));
        sb.append(CdaGeneratorUtils.getXmlForEndElement(CdaGeneratorConstants.COMP_EL_NAME));
    } else {
        sb.append(generateEmptyMedications());
    }
    return sb.toString();
}

Example 70 with Timing

use of org.hl7.fhir.r4b.model.Timing in project eCRNow by drajer-health.

the class CdaFhirUtilities method getStringForType.

public static String getStringForType(Type dt) {
    if (dt != null) {
        StringBuilder val = new StringBuilder();
        if (dt instanceof Coding) {
            Coding cd = (Coding) dt;
            val.append(getStringForCoding(cd));
        } else if (dt instanceof CodeableConcept) {
            CodeableConcept cd = (CodeableConcept) dt;
            if (!StringUtils.isEmpty(cd.getText())) {
                val.append(cd.getText());
            } else {
                List<Coding> cds = cd.getCoding();
                Boolean first = true;
                for (Coding c : cds) {
                    if (!first) {
                        val.append(CdaGeneratorConstants.SPACE).append(CdaGeneratorConstants.PIPE).append(CdaGeneratorConstants.SPACE);
                    }
                    first = false;
                    val.append(getStringForCoding(c));
                }
            }
        } else if (dt instanceof Quantity) {
            Quantity qt = (Quantity) dt;
            val.append(getStringForQuantity(qt));
        } else if (dt instanceof DateTimeType) {
            DateTimeType d = (DateTimeType) dt;
            val.append(d.getValueAsString());
        } else if (dt instanceof Timing) {
            logger.debug("Found an instance of timing for creating string ");
            Timing t = (Timing) (dt);
            if (t.getRepeat() != null && t.getRepeat().getBounds() != null) {
                logger.debug("Found the bounds element for creating string ");
                String v = getStringForType(t.getRepeat().getBounds());
                val.append(v);
            }
        } else if (dt instanceof Period) {
            Period pt = (Period) dt;
            logger.debug("Found the Period element for creating string");
            if (pt.getStart() != null && pt.getEnd() != null) {
                val.append(pt.getStart().toString()).append(CdaGeneratorConstants.PIPE).append(pt.getEnd().toString());
            } else if (pt.getStart() != null) {
                val.append(pt.getStart().toString());
            } else {
                val.append(CdaGeneratorConstants.UNKNOWN_VALUE);
            }
        } else if (dt instanceof CodeType) {
            CodeType cd = (CodeType) dt;
            val.append(cd.getValue());
        } else if (dt instanceof StringType) {
            StringType st = (StringType) dt;
            val.append(st.getValue());
        }
        logger.debug("Printing the class name {} and value {}", dt.getClass(), val);
        return val.toString();
    }
    return CdaGeneratorConstants.UNKNOWN_VALUE;
}