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Example 56 with ConceptReferenceComponent

use of org.hl7.fhir.r4b.model.ValueSet.ConceptReferenceComponent in project org.hl7.fhir.core by hapifhir.

the class ValueSetRenderer method addLangaugesToRow.

public void addLangaugesToRow(ConceptReferenceComponent c, List<String> langs, XhtmlNode tr) {
    for (String lang : langs) {
        String d = null;
        for (Extension ext : c.getExtension()) {
            if (ToolingExtensions.EXT_TRANSLATION.equals(ext.getUrl())) {
                String l = ToolingExtensions.readStringExtension(ext, "lang");
                if (lang.equals(l)) {
                    d = ToolingExtensions.readStringExtension(ext, "content");
                }
            }
        }
        if (d == null) {
            for (ConceptReferenceDesignationComponent dd : c.getDesignation()) {
                String l = dd.getLanguage();
                if (lang.equals(l)) {
                    d = dd.getValue();
                }
            }
        }
        tr.td().addText(d == null ? "" : d);
    }
}
Also used : Extension(org.hl7.fhir.r5.model.Extension) ConceptReferenceDesignationComponent(org.hl7.fhir.r5.model.ValueSet.ConceptReferenceDesignationComponent)

Example 57 with ConceptReferenceComponent

use of org.hl7.fhir.r4b.model.ValueSet.ConceptReferenceComponent in project org.hl7.fhir.core by hapifhir.

the class ValueSetRenderer method generateComposition.

private boolean generateComposition(XhtmlNode x, ValueSet vs, boolean header, List<UsedConceptMap> maps) throws FHIRException, IOException {
    boolean hasExtensions = false;
    List<String> langs = new ArrayList<String>();
    // map of url = description, where url is the designation code. Designations that are for languages won't make it into this list
    Map<String, String> designations = new HashMap<>();
    for (ConceptSetComponent inc : vs.getCompose().getInclude()) {
        scanDesignations(inc, langs, designations);
    }
    for (ConceptSetComponent inc : vs.getCompose().getExclude()) {
        scanDesignations(inc, langs, designations);
    }
    boolean doDesignations = langs.size() + designations.size() < MAX_DESIGNATIONS_IN_LINE;
    if (header) {
        XhtmlNode h = x.h2();
        h.addText(vs.present());
        addMarkdown(x, vs.getDescription());
        if (vs.hasCopyrightElement())
            generateCopyright(x, vs);
    }
    int index = 0;
    if (vs.getCompose().getInclude().size() == 1 && vs.getCompose().getExclude().size() == 0) {
        hasExtensions = genInclude(x.ul(), vs.getCompose().getInclude().get(0), "Include", langs, doDesignations, maps, designations, index) || hasExtensions;
    } else {
        XhtmlNode p = x.para();
        p.tx("This value set includes codes based on the following rules:");
        XhtmlNode ul = x.ul();
        for (ConceptSetComponent inc : vs.getCompose().getInclude()) {
            hasExtensions = genInclude(ul, inc, "Include", langs, doDesignations, maps, designations, index) || hasExtensions;
            index++;
        }
        if (vs.getCompose().hasExclude()) {
            p = x.para();
            p.tx("This value set excludes codes based on the following rules:");
            ul = x.ul();
            for (ConceptSetComponent exc : vs.getCompose().getExclude()) {
                hasExtensions = genInclude(ul, exc, "Exclude", langs, doDesignations, maps, designations, index) || hasExtensions;
                index++;
            }
        }
    }
    if (!doDesignations && langs.size() + designations.size() > 0) {
        Collections.sort(langs);
        if (designations.size() == 0) {
            x.para().b().tx("Additional Language Displays");
        } else if (langs.size() == 0) {
            x.para().b().tx("Additional Designations");
        } else {
            x.para().b().tx("Additional Designations and Language Displays");
        }
        XhtmlNode t = x.table("codes");
        XhtmlNode tr = t.tr();
        tr.td().b().tx("Code");
        for (String url : designations.keySet()) {
            tr.td().b().addText(designations.get(url));
        }
        for (String lang : langs) {
            tr.td().b().addText(describeLang(lang));
        }
        for (ConceptSetComponent c : vs.getCompose().getInclude()) {
            for (ConceptReferenceComponent cc : c.getConcept()) {
                addDesignationRow(cc, t, langs, designations);
            }
        }
    }
    return hasExtensions;
}
Also used : ConceptSetComponent(org.hl7.fhir.r5.model.ValueSet.ConceptSetComponent) HashMap(java.util.HashMap) ArrayList(java.util.ArrayList) ConceptReferenceComponent(org.hl7.fhir.r5.model.ValueSet.ConceptReferenceComponent) XhtmlNode(org.hl7.fhir.utilities.xhtml.XhtmlNode)

Example 58 with ConceptReferenceComponent

use of org.hl7.fhir.r4b.model.ValueSet.ConceptReferenceComponent in project org.hl7.fhir.core by hapifhir.

the class DataRenderer method describeLang.

protected String describeLang(String lang) {
    // special cases:
    if ("fr-CA".equals(lang)) {
        // this one was omitted from the value set
        return "French (Canadian)";
    }
    ValueSet v = getContext().getWorker().fetchResource(ValueSet.class, "http://hl7.org/fhir/ValueSet/languages");
    if (v != null) {
        ConceptReferenceComponent l = null;
        for (ConceptReferenceComponent cc : v.getCompose().getIncludeFirstRep().getConcept()) {
            if (cc.getCode().equals(lang))
                l = cc;
        }
        if (l == null) {
            if (lang.contains("-")) {
                lang = lang.substring(0, lang.indexOf("-"));
            }
            for (ConceptReferenceComponent cc : v.getCompose().getIncludeFirstRep().getConcept()) {
                if (cc.getCode().equals(lang)) {
                    l = cc;
                    break;
                }
            }
            if (l == null) {
                for (ConceptReferenceComponent cc : v.getCompose().getIncludeFirstRep().getConcept()) {
                    if (cc.getCode().startsWith(lang + "-")) {
                        l = cc;
                        break;
                    }
                }
            }
        }
        if (l != null) {
            if (lang.contains("-"))
                lang = lang.substring(0, lang.indexOf("-"));
            String en = l.getDisplay();
            String nativelang = null;
            for (ConceptReferenceDesignationComponent cd : l.getDesignation()) {
                if (cd.getLanguage().equals(lang))
                    nativelang = cd.getValue();
            }
            if (nativelang == null)
                return en + " (" + lang + ")";
            else
                return nativelang + " (" + en + ", " + lang + ")";
        }
    }
    return lang;
}
Also used : ConceptReferenceDesignationComponent(org.hl7.fhir.r5.model.ValueSet.ConceptReferenceDesignationComponent) ValueSet(org.hl7.fhir.r5.model.ValueSet) ConceptReferenceComponent(org.hl7.fhir.r5.model.ValueSet.ConceptReferenceComponent)

Example 59 with ConceptReferenceComponent

use of org.hl7.fhir.r4b.model.ValueSet.ConceptReferenceComponent in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method describeLang.

private String describeLang(String lang) {
    ValueSet v = context.fetchResource(ValueSet.class, "http://hl7.org/fhir/ValueSet/languages");
    if (v != null) {
        ConceptReferenceComponent l = null;
        for (ConceptReferenceComponent cc : v.getCompose().getIncludeFirstRep().getConcept()) {
            if (cc.getCode().equals(lang))
                l = cc;
        }
        if (l == null) {
            if (lang.contains("-"))
                lang = lang.substring(0, lang.indexOf("-"));
            for (ConceptReferenceComponent cc : v.getCompose().getIncludeFirstRep().getConcept()) {
                if (cc.getCode().equals(lang) || cc.getCode().startsWith(lang + "-"))
                    l = cc;
            }
        }
        if (l != null) {
            if (lang.contains("-"))
                lang = lang.substring(0, lang.indexOf("-"));
            String en = l.getDisplay();
            String nativelang = null;
            for (ConceptReferenceDesignationComponent cd : l.getDesignation()) {
                if (cd.getLanguage().equals(lang))
                    nativelang = cd.getValue();
            }
            if (nativelang == null)
                return en + " (" + lang + ")";
            else
                return nativelang + " (" + en + ", " + lang + ")";
        }
    }
    return lang;
}
Also used : ConceptReferenceDesignationComponent(org.hl7.fhir.dstu3.model.ValueSet.ConceptReferenceDesignationComponent) ValueSet(org.hl7.fhir.dstu3.model.ValueSet) ConceptReferenceComponent(org.hl7.fhir.dstu3.model.ValueSet.ConceptReferenceComponent)

Example 60 with ConceptReferenceComponent

use of org.hl7.fhir.r4b.model.ValueSet.ConceptReferenceComponent in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method genInclude.

private boolean genInclude(ResourceContext rcontext, XhtmlNode ul, ConceptSetComponent inc, String type, List<String> langs, List<UsedConceptMap> maps) throws FHIRException, IOException {
    boolean hasExtensions = false;
    XhtmlNode li;
    li = ul.li();
    CodeSystem e = context.fetchCodeSystem(inc.getSystem());
    if (inc.hasSystem()) {
        if (inc.getConcept().size() == 0 && inc.getFilter().size() == 0) {
            li.addText(type + " all codes defined in ");
            addCsRef(inc, li, e);
        } else {
            if (inc.getConcept().size() > 0) {
                li.addText(type + " these codes as defined in ");
                addCsRef(inc, li, e);
                XhtmlNode t = li.table("none");
                boolean hasComments = false;
                boolean hasDefinition = false;
                for (ConceptReferenceComponent c : inc.getConcept()) {
                    hasComments = hasComments || ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_VS_COMMENT);
                    hasDefinition = hasDefinition || ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_DEFINITION);
                }
                if (hasComments || hasDefinition)
                    hasExtensions = true;
                addMapHeaders(addTableHeaderRowStandard(t, false, true, hasDefinition, hasComments, false, false, null), maps);
                for (ConceptReferenceComponent c : inc.getConcept()) {
                    XhtmlNode tr = t.tr();
                    XhtmlNode td = tr.td();
                    ConceptDefinitionComponent cc = getConceptForCode(e, c.getCode(), inc);
                    addCodeToTable(false, inc.getSystem(), c.getCode(), c.hasDisplay() ? c.getDisplay() : cc != null ? cc.getDisplay() : "", td);
                    td = tr.td();
                    if (!Utilities.noString(c.getDisplay()))
                        td.addText(c.getDisplay());
                    else if (cc != null && !Utilities.noString(cc.getDisplay()))
                        td.addText(cc.getDisplay());
                    td = tr.td();
                    if (ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_DEFINITION))
                        smartAddText(td, ToolingExtensions.readStringExtension(c, ToolingExtensions.EXT_DEFINITION));
                    else if (cc != null && !Utilities.noString(cc.getDefinition()))
                        smartAddText(td, cc.getDefinition());
                    if (ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_VS_COMMENT)) {
                        smartAddText(tr.td(), "Note: " + ToolingExtensions.readStringExtension(c, ToolingExtensions.EXT_VS_COMMENT));
                    }
                    for (ConceptReferenceDesignationComponent cd : c.getDesignation()) {
                        if (cd.hasLanguage() && !langs.contains(cd.getLanguage()))
                            langs.add(cd.getLanguage());
                    }
                }
            }
            boolean first = true;
            for (ConceptSetFilterComponent f : inc.getFilter()) {
                if (first) {
                    li.addText(type + " codes from ");
                    first = false;
                } else
                    li.tx(" and ");
                addCsRef(inc, li, e);
                li.tx(" where " + f.getProperty() + " " + describe(f.getOp()) + " ");
                if (e != null && codeExistsInValueSet(e, f.getValue())) {
                    String href = prefix + getCsRef(e);
                    if (href.contains("#"))
                        href = href + "-" + Utilities.nmtokenize(f.getValue());
                    else
                        href = href + "#" + e.getId() + "-" + Utilities.nmtokenize(f.getValue());
                    li.ah(href).addText(f.getValue());
                } else if ("concept".equals(f.getProperty()) && inc.hasSystem()) {
                    li.addText(f.getValue());
                    ValidationResult vr = context.validateCode(terminologyServiceOptions, inc.getSystem(), f.getValue(), null);
                    if (vr.isOk()) {
                        li.tx(" (" + vr.getDisplay() + ")");
                    }
                } else
                    li.addText(f.getValue());
                String disp = ToolingExtensions.getDisplayHint(f);
                if (disp != null)
                    li.tx(" (" + disp + ")");
            }
        }
        if (inc.hasValueSet()) {
            li.tx(", where the codes are contained in ");
            boolean first = true;
            for (UriType vs : inc.getValueSet()) {
                if (first)
                    first = false;
                else
                    li.tx(", ");
                AddVsRef(rcontext, vs.asStringValue(), li);
            }
        }
    } else {
        li.tx("Import all the codes that are contained in ");
        boolean first = true;
        for (UriType vs : inc.getValueSet()) {
            if (first)
                first = false;
            else
                li.tx(", ");
            AddVsRef(rcontext, vs.asStringValue(), li);
        }
    }
    return hasExtensions;
}
Also used : ValidationResult(org.hl7.fhir.r4.context.IWorkerContext.ValidationResult) CodeSystem(org.hl7.fhir.r4.model.CodeSystem) XhtmlNode(org.hl7.fhir.utilities.xhtml.XhtmlNode)

Aggregations

ConceptReferenceComponent (org.hl7.fhir.r5.model.ValueSet.ConceptReferenceComponent)17 ArrayList (java.util.ArrayList)14 XhtmlNode (org.hl7.fhir.utilities.xhtml.XhtmlNode)14 ConceptReferenceComponent (org.hl7.fhir.r4b.model.ValueSet.ConceptReferenceComponent)12 ConceptReferenceComponent (org.hl7.fhir.r4.model.ValueSet.ConceptReferenceComponent)10 HashMap (java.util.HashMap)7 ConceptReferenceComponent (org.hl7.fhir.dstu3.model.ValueSet.ConceptReferenceComponent)7 TerminologyServiceException (org.hl7.fhir.exceptions.TerminologyServiceException)7 ConceptSetComponent (org.hl7.fhir.r5.model.ValueSet.ConceptSetComponent)7 ValueSet (org.hl7.fhir.r4.model.ValueSet)6 ConceptSetComponent (org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent)6 ConceptDefinitionComponent (org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent)6 NotImplementedException (org.apache.commons.lang3.NotImplementedException)5 NoTerminologyServiceException (org.hl7.fhir.exceptions.NoTerminologyServiceException)5 ConceptReferenceDesignationComponent (org.hl7.fhir.r5.model.ValueSet.ConceptReferenceDesignationComponent)5 ConceptSetComponent (org.hl7.fhir.dstu3.model.ValueSet.ConceptSetComponent)4 ConceptDefinitionComponent (org.hl7.fhir.r4b.model.CodeSystem.ConceptDefinitionComponent)4 ConceptReferenceDesignationComponent (org.hl7.fhir.r4b.model.ValueSet.ConceptReferenceDesignationComponent)4 ValueSet (org.hl7.fhir.r5.model.ValueSet)4 ConceptSetFilterComponent (org.hl7.fhir.r5.model.ValueSet.ConceptSetFilterComponent)4