Examples with CapabilityStatement org.hl7.fhir.r5.model.CapabilityStatement used on opensource projects

Example 11 with CapabilityStatement

use of org.hl7.fhir.r5.model.CapabilityStatement in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method in_populations_defines_returned.

@Test
public void in_populations_defines_returned() throws Exception {
    CapabilityStatement metadata = getCapabilityStatement();
    mockFhirResourceRetrieval("/metadata?_format=json", metadata);
    Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
    // Add 2 names to test list
    HumanName name1 = new HumanName();
    name1.setFamily("Jones");
    HumanName name2 = new HumanName();
    name2.setFamily("Smith");
    patient.setName(Arrays.asList(name1, name2));
    // Add marital status to test codeable concept
    CodeableConcept maritalStatus = new CodeableConcept();
    Coding maritalCoding = new Coding();
    maritalCoding.setCode("M");
    maritalCoding.setSystem("http://terminology.hl7.org/CodeSystem/v3-MaritalStatus");
    maritalCoding.setDisplay("Married");
    maritalStatus.setCoding(Arrays.asList(maritalCoding));
    maritalStatus.setText("Married");
    patient.setMaritalStatus(maritalStatus);
    mockFhirResourceRetrieval(patient);
    Library library = setupDefineReturnLibrary();
    expressionsByPopulationType.clear();
    expressionsByPopulationType.put(MeasurePopulationType.INITIALPOPULATION, INITIAL_POPULATION);
    expressionsByPopulationType.put(MeasurePopulationType.DENOMINATOR, DENOMINATOR);
    expressionsByPopulationType.put(MeasurePopulationType.NUMERATOR, NUMERATOR);
    Measure measure = getProportionMeasure("ProportionMeasureName", library, expressionsByPopulationType);
    mockFhirResourceRetrieval(measure);
    MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), null, new MeasureEvidenceOptions(true, DefineReturnOptions.ALL));
    assertNotNull(report);
    assertFalse(report.getEvaluatedResource().isEmpty());
    List<Extension> returnedExtensions = report.getExtensionsByUrl(CDMConstants.EVIDENCE_URL);
    assertFalse(returnedExtensions.isEmpty());
    assertEquals(30, returnedExtensions.size());
}

Example 12 with CapabilityStatement

use of org.hl7.fhir.r5.model.CapabilityStatement in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method measure_default_unsupported_type.

@Test(expected = UnsupportedFhirTypeException.class)
public void measure_default_unsupported_type() throws Exception {
    CapabilityStatement metadata = getCapabilityStatement();
    mockFhirResourceRetrieval("/metadata?_format=json", metadata);
    Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
    mockFhirResourceRetrieval(patient);
    Library library = mockLibraryRetrieval("TestAdultMales", DEFAULT_VERSION, "cql/fhir-measure/test-parameter-defaults.cql");
    expressionsByPopulationType.clear();
    expressionsByPopulationType.put(MeasurePopulationType.INITIALPOPULATION, INITIAL_POPULATION);
    expressionsByPopulationType.put(MeasurePopulationType.DENOMINATOR, DENOMINATOR);
    expressionsByPopulationType.put(MeasurePopulationType.NUMERATOR, NUMERATOR);
    Measure measure = getProportionMeasure("ProportionMeasureName", library, expressionsByPopulationType);
    Address unsupportedType = new Address();
    unsupportedType.setCity("Cleaveland");
    measure.addExtension(createMeasureParameter("SomeAge", unsupportedType));
    mockFhirResourceRetrieval(measure);
    evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), null, new MeasureEvidenceOptions());
}

Example 13 with CapabilityStatement

use of org.hl7.fhir.r5.model.CapabilityStatement in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method in_initial_population_denominator_and_nothing_else___proportion_evaluated_correctly.

@Test
public void in_initial_population_denominator_and_nothing_else___proportion_evaluated_correctly() throws Exception {
    CapabilityStatement metadata = getCapabilityStatement();
    mockFhirResourceRetrieval("/metadata?_format=json", metadata);
    Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
    mockFhirResourceRetrieval(patient);
    Library library = mockLibraryRetrieval("TestDummyPopulations", DEFAULT_VERSION, "cql/fhir-measure/test-dummy-populations.cql");
    expressionsByPopulationType.clear();
    expressionsByPopulationType.put(MeasurePopulationType.INITIALPOPULATION, INITIAL_POPULATION);
    expressionsByPopulationType.put(MeasurePopulationType.DENOMINATOR, DENOMINATOR);
    expressionsByPopulationType.put(MeasurePopulationType.NUMERATOR, NUMERATOR);
    Measure measure = getProportionMeasure("ProportionMeasureName", library, expressionsByPopulationType);
    mockFhirResourceRetrieval(measure);
    MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), null);
    assertNotNull(report);
    assertEquals(expressionsByPopulationType.size(), report.getGroupFirstRep().getPopulation().size());
    for (MeasureReport.MeasureReportGroupPopulationComponent pop : report.getGroupFirstRep().getPopulation()) {
        MeasurePopulationType type = MeasurePopulationType.fromCode(pop.getCode().getCodingFirstRep().getCode());
        switch(type) {
            case INITIALPOPULATION:
                assertEquals(1, pop.getCount());
                break;
            case DENOMINATOR:
                assertEquals(1, pop.getCount());
                break;
            case NUMERATOR:
                assertEquals(0, pop.getCount());
                break;
            default:
                fail("Unexpected population type in result");
        }
    }
}

Example 14 with CapabilityStatement

use of org.hl7.fhir.r5.model.CapabilityStatement in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method elm_in_initial_population___cohort_evaluated_correctly.

@Test
public void elm_in_initial_population___cohort_evaluated_correctly() throws Exception {
    CapabilityStatement metadata = getCapabilityStatement();
    mockFhirResourceRetrieval("/metadata?_format=json", metadata);
    Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
    mockFhirResourceRetrieval(patient);
    Library library = mockLibraryRetrieval("TestDummyPopulations", DEFAULT_VERSION, "cql/fhir-measure/test-dummy-populations.xml", ELM_MIME_TYPE);
    Measure measure = getCohortMeasure("CohortMeasureName", library, INITIAL_POPULATION);
    mockFhirResourceRetrieval(measure);
    MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), null);
    assertNotNull(report);
    assertEquals(1, report.getGroupFirstRep().getPopulationFirstRep().getCount());
    verify(1, getRequestedFor(urlEqualTo("/Patient/123?_format=json")));
    // These ensure that the cache is working
    verify(1, getRequestedFor(urlMatching("/Library\\?url=http.*&_format=json")));
    verify(1, getRequestedFor(urlEqualTo("/Library?name%3Aexact=" + library.getName() + "&version=1.0.0&_format=json")));
}

Example 15 with CapabilityStatement

use of org.hl7.fhir.r5.model.CapabilityStatement in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method runCareGapTest.

private void runCareGapTest(Map<String, Parameter> parameters, Map<String, Integer> careGapExpectations) throws ParseException, Exception {
    CapabilityStatement metadata = getCapabilityStatement();
    mockFhirResourceRetrieval("/metadata?_format=json", metadata);
    Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
    mockFhirResourceRetrieval(patient);
    Library library = mockLibraryRetrieval("TestDummyPopulations", DEFAULT_VERSION, "cql/fhir-measure/test-dummy-populations.cql");
    Measure measure = getCareGapMeasure("ProportionMeasureName", library, expressionsByPopulationType, "CareGap1", "CareGap2");
    mockFhirResourceRetrieval(measure);
    MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), parameters);
    assertNotNull(report);
    assertPopulationExpectations(measure, report, careGapExpectations);
}