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Example 71 with Function

use of org.hl7.fhir.r5.model.ExpressionNode.Function in project org.hl7.fhir.core by hapifhir.

the class FHIRPathEngine method parseExpression.

private ExpressionNode parseExpression(FHIRLexer lexer, boolean proximal) throws FHIRLexerException {
    ExpressionNode result = new ExpressionNode(lexer.nextId());
    ExpressionNode wrapper = null;
    SourceLocation c = lexer.getCurrentStartLocation();
    result.setStart(lexer.getCurrentLocation());
    // so we back correct for both +/- and as part of a numeric constant below.
    if (Utilities.existsInList(lexer.getCurrent(), "-", "+")) {
        wrapper = new ExpressionNode(lexer.nextId());
        wrapper.setKind(Kind.Unary);
        wrapper.setOperation(ExpressionNode.Operation.fromCode(lexer.take()));
        wrapper.setStart(lexer.getCurrentLocation());
        wrapper.setProximal(proximal);
    }
    if (lexer.getCurrent() == null) {
        throw lexer.error("Expression terminated unexpectedly");
    } else if (lexer.isConstant()) {
        boolean isString = lexer.isStringConstant();
        if (!isString && (lexer.getCurrent().startsWith("-") || lexer.getCurrent().startsWith("+"))) {
            // the grammar says that this is a unary operation; it affects the correct processing order of the inner operations
            wrapper = new ExpressionNode(lexer.nextId());
            wrapper.setKind(Kind.Unary);
            wrapper.setOperation(ExpressionNode.Operation.fromCode(lexer.getCurrent().substring(0, 1)));
            wrapper.setProximal(proximal);
            wrapper.setStart(lexer.getCurrentLocation());
            lexer.setCurrent(lexer.getCurrent().substring(1));
        }
        result.setConstant(processConstant(lexer));
        result.setKind(Kind.Constant);
        if (!isString && !lexer.done() && (result.getConstant() instanceof IntegerType || result.getConstant() instanceof DecimalType) && (lexer.isStringConstant() || lexer.hasToken("year", "years", "month", "months", "week", "weeks", "day", "days", "hour", "hours", "minute", "minutes", "second", "seconds", "millisecond", "milliseconds"))) {
            // it's a quantity
            String ucum = null;
            String unit = null;
            if (lexer.hasToken("year", "years", "month", "months", "week", "weeks", "day", "days", "hour", "hours", "minute", "minutes", "second", "seconds", "millisecond", "milliseconds")) {
                String s = lexer.take();
                unit = s;
                if (s.equals("year") || s.equals("years")) {
                // this is not the UCUM year
                } else if (s.equals("month") || s.equals("months")) {
                // this is not the UCUM month
                } else if (s.equals("week") || s.equals("weeks")) {
                    ucum = "wk";
                } else if (s.equals("day") || s.equals("days")) {
                    ucum = "d";
                } else if (s.equals("hour") || s.equals("hours")) {
                    ucum = "h";
                } else if (s.equals("minute") || s.equals("minutes")) {
                    ucum = "min";
                } else if (s.equals("second") || s.equals("seconds")) {
                    ucum = "s";
                } else {
                    // (s.equals("millisecond") || s.equals("milliseconds"))
                    ucum = "ms";
                }
            } else {
                ucum = lexer.readConstant("units");
            }
            result.setConstant(new Quantity().setValue(new BigDecimal(result.getConstant().primitiveValue())).setUnit(unit).setSystem(ucum == null ? null : "http://unitsofmeasure.org").setCode(ucum));
        }
        result.setEnd(lexer.getCurrentLocation());
    } else if ("(".equals(lexer.getCurrent())) {
        lexer.next();
        result.setKind(Kind.Group);
        result.setGroup(parseExpression(lexer, true));
        if (!")".equals(lexer.getCurrent())) {
            throw lexer.error("Found " + lexer.getCurrent() + " expecting a \")\"");
        }
        result.setEnd(lexer.getCurrentLocation());
        lexer.next();
    } else {
        if (!lexer.isToken() && !lexer.getCurrent().startsWith("`")) {
            throw lexer.error("Found " + lexer.getCurrent() + " expecting a token name");
        }
        if (lexer.isFixedName()) {
            result.setName(lexer.readFixedName("Path Name"));
        } else {
            result.setName(lexer.take());
        }
        result.setEnd(lexer.getCurrentLocation());
        if (!result.checkName()) {
            throw lexer.error("Found " + result.getName() + " expecting a valid token name");
        }
        if ("(".equals(lexer.getCurrent())) {
            Function f = Function.fromCode(result.getName());
            FunctionDetails details = null;
            if (f == null) {
                if (hostServices != null) {
                    details = hostServices.resolveFunction(result.getName());
                }
                if (details == null) {
                    throw lexer.error("The name " + result.getName() + " is not a valid function name");
                }
                f = Function.Custom;
            }
            result.setKind(Kind.Function);
            result.setFunction(f);
            lexer.next();
            while (!")".equals(lexer.getCurrent())) {
                result.getParameters().add(parseExpression(lexer, true));
                if (",".equals(lexer.getCurrent())) {
                    lexer.next();
                } else if (!")".equals(lexer.getCurrent())) {
                    throw lexer.error("The token " + lexer.getCurrent() + " is not expected here - either a \",\" or a \")\" expected");
                }
            }
            result.setEnd(lexer.getCurrentLocation());
            lexer.next();
            checkParameters(lexer, c, result, details);
        } else {
            result.setKind(Kind.Name);
        }
    }
    ExpressionNode focus = result;
    if ("[".equals(lexer.getCurrent())) {
        lexer.next();
        ExpressionNode item = new ExpressionNode(lexer.nextId());
        item.setKind(Kind.Function);
        item.setFunction(ExpressionNode.Function.Item);
        item.getParameters().add(parseExpression(lexer, true));
        if (!lexer.getCurrent().equals("]")) {
            throw lexer.error("The token " + lexer.getCurrent() + " is not expected here - a \"]\" expected");
        }
        lexer.next();
        result.setInner(item);
        focus = item;
    }
    if (".".equals(lexer.getCurrent())) {
        lexer.next();
        focus.setInner(parseExpression(lexer, false));
    }
    result.setProximal(proximal);
    if (proximal) {
        while (lexer.isOp()) {
            focus.setOperation(ExpressionNode.Operation.fromCode(lexer.getCurrent()));
            focus.setOpStart(lexer.getCurrentStartLocation());
            focus.setOpEnd(lexer.getCurrentLocation());
            lexer.next();
            focus.setOpNext(parseExpression(lexer, false));
            focus = focus.getOpNext();
        }
        result = organisePrecedence(lexer, result);
    }
    if (wrapper != null) {
        wrapper.setOpNext(result);
        result.setProximal(false);
        result = wrapper;
    }
    return result;
}
Also used : SourceLocation(org.hl7.fhir.utilities.SourceLocation) IntegerType(org.hl7.fhir.r5.model.IntegerType) Function(org.hl7.fhir.r5.model.ExpressionNode.Function) FunctionDetails(org.hl7.fhir.r5.utils.FHIRPathEngine.IEvaluationContext.FunctionDetails) ExpressionNode(org.hl7.fhir.r5.model.ExpressionNode) DecimalType(org.hl7.fhir.r5.model.DecimalType) Quantity(org.hl7.fhir.r5.model.Quantity) BigDecimal(java.math.BigDecimal)

Example 72 with Function

use of org.hl7.fhir.r5.model.ExpressionNode.Function in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeMedicationDispenseMedicationDispensePerformerComponent.

protected void composeMedicationDispenseMedicationDispensePerformerComponent(Complex parent, String parentType, String name, MedicationDispense.MedicationDispensePerformerComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "performer", name, element, index);
    if (element.hasFunction())
        composeCodeableConcept(t, "MedicationDispense", "function", element.getFunction(), -1);
    if (element.hasActor())
        composeReference(t, "MedicationDispense", "actor", element.getActor(), -1);
}
Also used : Complex(org.hl7.fhir.r4.utils.formats.Turtle.Complex)

Example 73 with Function

use of org.hl7.fhir.r5.model.ExpressionNode.Function in project org.hl7.fhir.core by hapifhir.

the class FHIRPathEngine method execute.

private List<Base> execute(ExecutionContext context, List<Base> focus, ExpressionNode exp, boolean atEntry) throws FHIRException {
    // System.out.println("Evaluate {'"+exp.toString()+"'} on "+focus.toString());
    List<Base> work = new ArrayList<Base>();
    switch(exp.getKind()) {
        case Unary:
            work.add(new IntegerType(0));
            break;
        case Name:
            if (atEntry && exp.getName().equals("$this")) {
                work.add(context.getThisItem());
            } else if (atEntry && exp.getName().equals("$total")) {
                work.addAll(context.getTotal());
            } else if (atEntry && exp.getName().equals("$index")) {
                work.add(context.getIndex());
            } else {
                for (Base item : focus) {
                    List<Base> outcome = execute(context, item, exp, atEntry);
                    for (Base base : outcome) {
                        if (base != null) {
                            work.add(base);
                        }
                    }
                }
            }
            break;
        case Function:
            List<Base> work2 = evaluateFunction(context, focus, exp);
            work.addAll(work2);
            break;
        case Constant:
            work.addAll(resolveConstant(context, exp.getConstant(), false, exp));
            break;
        case Group:
            work2 = execute(context, focus, exp.getGroup(), atEntry);
            work.addAll(work2);
    }
    if (exp.getInner() != null) {
        work = execute(context, work, exp.getInner(), false);
    }
    if (exp.isProximal() && exp.getOperation() != null) {
        ExpressionNode next = exp.getOpNext();
        ExpressionNode last = exp;
        while (next != null) {
            List<Base> work2 = preOperate(work, last.getOperation(), exp);
            if (work2 != null) {
                work = work2;
            } else if (last.getOperation() == Operation.Is || last.getOperation() == Operation.As) {
                work2 = executeTypeName(context, focus, next, false);
                work = operate(context, work, last.getOperation(), work2, last);
            } else {
                work2 = execute(context, focus, next, true);
                work = operate(context, work, last.getOperation(), work2, last);
            // System.out.println("Result of {'"+last.toString()+" "+last.getOperation().toCode()+" "+next.toString()+"'}: "+focus.toString());
            }
            last = next;
            next = next.getOpNext();
        }
    }
    // System.out.println("Result of {'"+exp.toString()+"'}: "+work.toString());
    return work;
}
Also used : IntegerType(org.hl7.fhir.r4b.model.IntegerType) ExpressionNode(org.hl7.fhir.r4b.model.ExpressionNode) ArrayList(java.util.ArrayList) Base(org.hl7.fhir.r4b.model.Base)

Example 74 with Function

use of org.hl7.fhir.r5.model.ExpressionNode.Function in project org.hl7.fhir.core by hapifhir.

the class FHIRPathEngine method parseExpression.

private ExpressionNode parseExpression(FHIRLexer lexer, boolean proximal) throws FHIRLexerException {
    ExpressionNode result = new ExpressionNode(lexer.nextId());
    ExpressionNode wrapper = null;
    SourceLocation c = lexer.getCurrentStartLocation();
    result.setStart(lexer.getCurrentLocation());
    // so we back correct for both +/- and as part of a numeric constant below.
    if (Utilities.existsInList(lexer.getCurrent(), "-", "+")) {
        wrapper = new ExpressionNode(lexer.nextId());
        wrapper.setKind(Kind.Unary);
        wrapper.setOperation(ExpressionNode.Operation.fromCode(lexer.take()));
        wrapper.setStart(lexer.getCurrentLocation());
        wrapper.setProximal(proximal);
    }
    if (lexer.isConstant()) {
        boolean isString = lexer.isStringConstant();
        if (!isString && (lexer.getCurrent().startsWith("-") || lexer.getCurrent().startsWith("+"))) {
            // the grammar says that this is a unary operation; it affects the correct processing order of the inner operations
            wrapper = new ExpressionNode(lexer.nextId());
            wrapper.setKind(Kind.Unary);
            wrapper.setOperation(ExpressionNode.Operation.fromCode(lexer.getCurrent().substring(0, 1)));
            wrapper.setProximal(proximal);
            wrapper.setStart(lexer.getCurrentLocation());
            lexer.setCurrent(lexer.getCurrent().substring(1));
        }
        result.setConstant(processConstant(lexer));
        result.setKind(Kind.Constant);
        if (!isString && !lexer.done() && (result.getConstant() instanceof IntegerType || result.getConstant() instanceof DecimalType) && (lexer.isStringConstant() || lexer.hasToken("year", "years", "month", "months", "week", "weeks", "day", "days", "hour", "hours", "minute", "minutes", "second", "seconds", "millisecond", "milliseconds"))) {
            // it's a quantity
            String ucum = null;
            String unit = null;
            if (lexer.hasToken("year", "years", "month", "months", "week", "weeks", "day", "days", "hour", "hours", "minute", "minutes", "second", "seconds", "millisecond", "milliseconds")) {
                String s = lexer.take();
                unit = s;
                if (s.equals("year") || s.equals("years")) {
                // this is not the UCUM year
                } else if (s.equals("month") || s.equals("months")) {
                // this is not the UCUM month
                } else if (s.equals("week") || s.equals("weeks")) {
                    ucum = "wk";
                } else if (s.equals("day") || s.equals("days")) {
                    ucum = "d";
                } else if (s.equals("hour") || s.equals("hours")) {
                    ucum = "h";
                } else if (s.equals("minute") || s.equals("minutes")) {
                    ucum = "min";
                } else if (s.equals("second") || s.equals("seconds")) {
                    ucum = "s";
                } else {
                    // (s.equals("millisecond") || s.equals("milliseconds"))
                    ucum = "ms";
                }
            } else {
                ucum = lexer.readConstant("units");
            }
            result.setConstant(new Quantity().setValue(new BigDecimal(result.getConstant().primitiveValue())).setUnit(unit).setSystem(ucum == null ? null : "http://unitsofmeasure.org").setCode(ucum));
        }
        result.setEnd(lexer.getCurrentLocation());
    } else if ("(".equals(lexer.getCurrent())) {
        lexer.next();
        result.setKind(Kind.Group);
        result.setGroup(parseExpression(lexer, true));
        if (!")".equals(lexer.getCurrent())) {
            throw lexer.error("Found " + lexer.getCurrent() + " expecting a \")\"");
        }
        result.setEnd(lexer.getCurrentLocation());
        lexer.next();
    } else {
        if (!lexer.isToken() && !lexer.getCurrent().startsWith("`")) {
            throw lexer.error("Found " + lexer.getCurrent() + " expecting a token name");
        }
        if (lexer.isFixedName()) {
            result.setName(lexer.readFixedName("Path Name"));
        } else {
            result.setName(lexer.take());
        }
        result.setEnd(lexer.getCurrentLocation());
        if (!result.checkName()) {
            throw lexer.error("Found " + result.getName() + " expecting a valid token name");
        }
        if ("(".equals(lexer.getCurrent())) {
            Function f = Function.fromCode(result.getName());
            FunctionDetails details = null;
            if (f == null) {
                if (hostServices != null) {
                    details = hostServices.resolveFunction(result.getName());
                }
                if (details == null) {
                    throw lexer.error("The name " + result.getName() + " is not a valid function name");
                }
                f = Function.Custom;
            }
            result.setKind(Kind.Function);
            result.setFunction(f);
            lexer.next();
            while (!")".equals(lexer.getCurrent())) {
                result.getParameters().add(parseExpression(lexer, true));
                if (",".equals(lexer.getCurrent())) {
                    lexer.next();
                } else if (!")".equals(lexer.getCurrent())) {
                    throw lexer.error("The token " + lexer.getCurrent() + " is not expected here - either a \",\" or a \")\" expected");
                }
            }
            result.setEnd(lexer.getCurrentLocation());
            lexer.next();
            checkParameters(lexer, c, result, details);
        } else {
            result.setKind(Kind.Name);
        }
    }
    ExpressionNode focus = result;
    if ("[".equals(lexer.getCurrent())) {
        lexer.next();
        ExpressionNode item = new ExpressionNode(lexer.nextId());
        item.setKind(Kind.Function);
        item.setFunction(ExpressionNode.Function.Item);
        item.getParameters().add(parseExpression(lexer, true));
        if (!lexer.getCurrent().equals("]")) {
            throw lexer.error("The token " + lexer.getCurrent() + " is not expected here - a \"]\" expected");
        }
        lexer.next();
        result.setInner(item);
        focus = item;
    }
    if (".".equals(lexer.getCurrent())) {
        lexer.next();
        focus.setInner(parseExpression(lexer, false));
    }
    result.setProximal(proximal);
    if (proximal) {
        while (lexer.isOp()) {
            focus.setOperation(ExpressionNode.Operation.fromCode(lexer.getCurrent()));
            focus.setOpStart(lexer.getCurrentStartLocation());
            focus.setOpEnd(lexer.getCurrentLocation());
            lexer.next();
            focus.setOpNext(parseExpression(lexer, false));
            focus = focus.getOpNext();
        }
        result = organisePrecedence(lexer, result);
    }
    if (wrapper != null) {
        wrapper.setOpNext(result);
        result.setProximal(false);
        result = wrapper;
    }
    return result;
}
Also used : SourceLocation(org.hl7.fhir.utilities.SourceLocation) IntegerType(org.hl7.fhir.r4b.model.IntegerType) Function(org.hl7.fhir.r4b.model.ExpressionNode.Function) FunctionDetails(org.hl7.fhir.r4b.utils.FHIRPathEngine.IEvaluationContext.FunctionDetails) ExpressionNode(org.hl7.fhir.r4b.model.ExpressionNode) DecimalType(org.hl7.fhir.r4b.model.DecimalType) Quantity(org.hl7.fhir.r4b.model.Quantity) BigDecimal(java.math.BigDecimal)

Example 75 with Function

use of org.hl7.fhir.r5.model.ExpressionNode.Function in project org.hl7.fhir.core by hapifhir.

the class DataRenderer method makeExceptionXhtml.

public XhtmlNode makeExceptionXhtml(Exception e, String function) {
    XhtmlNode xn;
    xn = new XhtmlNode(NodeType.Element, "div");
    XhtmlNode p = xn.para();
    p.b().tx("Exception " + function + ": " + e.getMessage());
    p.addComment(getStackTrace(e));
    return xn;
}
Also used : XhtmlNode(org.hl7.fhir.utilities.xhtml.XhtmlNode)

Aggregations

Test (org.junit.jupiter.api.Test)17 List (java.util.List)8 FhirPath (au.csiro.pathling.fhirpath.FhirPath)7 Reference (org.hl7.fhir.r4.model.Reference)7 SpringBootTest (org.springframework.boot.test.context.SpringBootTest)7 ParserContext (au.csiro.pathling.fhirpath.parser.ParserContext)6 MethodOutcome (ca.uhn.fhir.rest.api.MethodOutcome)6 URI (java.net.URI)6 Row (org.apache.spark.sql.Row)6 Session (org.eclipse.jetty.websocket.api.Session)6 ClientUpgradeRequest (org.eclipse.jetty.websocket.client.ClientUpgradeRequest)6 WebSocketClient (org.eclipse.jetty.websocket.client.WebSocketClient)6 IIdType (org.hl7.fhir.instance.model.api.IIdType)6 Complex (org.hl7.fhir.r4.utils.formats.Turtle.Complex)6 FhirReference (org.openmrs.module.fhir2.model.FhirReference)6 FhirTask (org.openmrs.module.fhir2.model.FhirTask)6 DatasetBuilder (au.csiro.pathling.test.builders.DatasetBuilder)5 ElementPathBuilder (au.csiro.pathling.test.builders.ElementPathBuilder)5 ParserContextBuilder (au.csiro.pathling.test.builders.ParserContextBuilder)5 ArrayList (java.util.ArrayList)5