Examples with Meta org.hl7.fhir.r5.model.Meta used on opensource projects

Example 36 with Meta

use of org.hl7.fhir.r5.model.Meta in project org.hl7.fhir.core by hapifhir.

the class LoincToDEConvertor method process.

public Bundle process(String sourceFile) throws FileNotFoundException, SAXException, IOException, ParserConfigurationException {
    this.definitions = sourceFile;
    log("Begin. Produce Loinc CDEs in " + dest + " from " + definitions);
    loadLoinc();
    log("LOINC loaded");
    now = DateTimeType.now();
    bundle = new Bundle();
    bundle.setType(BundleType.COLLECTION);
    bundle.setId("http://hl7.org/fhir/commondataelement/loinc");
    bundle.setMeta(new Meta().setLastUpdatedElement(InstantType.now()));
    processLoincCodes();
    return bundle;
}

Example 37 with Meta

use of org.hl7.fhir.r5.model.Meta in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerationTests method test.

@ParameterizedTest(name = "{index}: file {0}")
@MethodSource("data")
public void test(String id, TestDetails test) throws Exception {
    RenderingContext rc = new RenderingContext(context, null, null, "http://hl7.org/fhir", "", null, ResourceRendererMode.END_USER);
    rc.setDestDir("");
    rc.setHeader(test.isHeader());
    rc.setDefinitionsTarget("test.html");
    rc.setTerminologyServiceOptions(TerminologyServiceOptions.defaults());
    rc.setParser(new TestTypeParser());
    // getting timezones correct (well, at least consistent, so tests pass on any computer)
    rc.setLocale(new java.util.Locale("en", "AU"));
    rc.setTimeZoneId(ZoneId.of("Australia/Sydney"));
    rc.setDateTimeFormatString("yyyy-MM-dd'T'HH:mm:ssZZZZZ");
    rc.setDateFormatString("yyyy-MM-dd");
    rc.setMode(test.technical ? ResourceRendererMode.TECHNICAL : ResourceRendererMode.END_USER);
    Resource source;
    if (TestingUtilities.findTestResource("r5", "narrative", test.getId() + ".json")) {
        source = (Resource) new JsonParser().parse(TestingUtilities.loadTestResourceStream("r5", "narrative", test.getId() + ".json"));
    } else {
        source = (Resource) new XmlParser().parse(TestingUtilities.loadTestResourceStream("r5", "narrative", test.getId() + ".xml"));
    }
    XhtmlNode x = RendererFactory.factory(source, rc).build(source);
    String expected = TextFile.streamToString(TestingUtilities.loadTestResourceStream("r5", "narrative", test.getId() + ".html"));
    String actual = HEADER + new XhtmlComposer(true, true).compose(x) + FOOTER;
    String expectedFileName = CompareUtilities.tempFile("narrative", test.getId() + ".expected.html");
    String actualFileName = CompareUtilities.tempFile("narrative", test.getId() + ".actual.html");
    TextFile.stringToFile(expected, expectedFileName);
    TextFile.stringToFile(actual, actualFileName);
    String msg = CompareUtilities.checkXMLIsSame(expectedFileName, actualFileName);
    Assertions.assertTrue(msg == null, "Output does not match expected: " + msg);
    if (test.isMeta()) {
        org.hl7.fhir.r5.elementmodel.Element e = Manager.parseSingle(context, TestingUtilities.loadTestResourceStream("r5", "narrative", test.getId() + ".xml"), FhirFormat.XML);
        x = RendererFactory.factory(source, rc).render(new ElementWrappers.ResourceWrapperMetaElement(rc, e));
        expected = TextFile.streamToString(TestingUtilities.loadTestResourceStream("r5", "narrative", test.getId() + "-meta.html"));
        actual = HEADER + new XhtmlComposer(true, true).compose(x) + FOOTER;
        actualFileName = CompareUtilities.tempFile("narrative", test.getId() + "-meta.actual.html");
        TextFile.stringToFile(actual, actualFileName);
        msg = CompareUtilities.checkXMLIsSame(expectedFileName, actualFileName);
        Assertions.assertTrue(msg == null, "Meta output does not match expected: " + msg);
    }
}

Example 38 with Meta

use of org.hl7.fhir.r5.model.Meta in project org.hl7.fhir.core by hapifhir.

the class MetaTest method testMetaSecurity.

@Test
public void testMetaSecurity() {
    Meta meta = new Meta();
    Coding coding = meta.addSecurity().setSystem(TEST_SYSTEM).setCode(TEST_CODE);
    Assertions.assertTrue(meta.hasSecurity());
    Assertions.assertNotNull(meta.getSecurity());
    Assertions.assertNotNull(meta.getSecurity(TEST_SYSTEM, TEST_CODE));
    Assertions.assertEquals(1, meta.getSecurity().size());
    Assertions.assertEquals(meta.getSecurity().get(0), meta.getSecurity(TEST_SYSTEM, TEST_CODE));
    Assertions.assertEquals(meta.getSecurityFirstRep(), meta.getSecurity(TEST_SYSTEM, TEST_CODE));
    Assertions.assertEquals(coding, meta.getSecurity(TEST_SYSTEM, TEST_CODE));
}

Example 39 with Meta

use of org.hl7.fhir.r5.model.Meta in project org.hl7.fhir.core by hapifhir.

the class InstanceValidator method validateResourceRules.

private void validateResourceRules(List<ValidationMessage> errors, Element element, NodeStack stack) {
    String lang = element.getNamedChildValue("language");
    Element text = element.getNamedChild("text");
    if (text != null) {
        Element div = text.getNamedChild("div");
        if (lang != null && div != null) {
            XhtmlNode xhtml = div.getXhtml();
            String l = xhtml.getAttribute("lang");
            String xl = xhtml.getAttribute("xml:lang");
            if (l == null && xl == null) {
                warning(errors, IssueType.BUSINESSRULE, div.line(), div.col(), stack.getLiteralPath(), false, I18nConstants.LANGUAGE_XHTML_LANG_MISSING1);
            } else {
                if (l == null) {
                    warning(errors, IssueType.BUSINESSRULE, div.line(), div.col(), stack.getLiteralPath(), false, I18nConstants.LANGUAGE_XHTML_LANG_MISSING2);
                } else if (!l.equals(lang)) {
                    warning(errors, IssueType.BUSINESSRULE, div.line(), div.col(), stack.getLiteralPath(), false, I18nConstants.LANGUAGE_XHTML_LANG_DIFFERENT1, lang, l);
                }
                if (xl == null) {
                    warning(errors, IssueType.BUSINESSRULE, div.line(), div.col(), stack.getLiteralPath(), false, I18nConstants.LANGUAGE_XHTML_LANG_MISSING3);
                } else if (!xl.equals(lang)) {
                    warning(errors, IssueType.BUSINESSRULE, div.line(), div.col(), stack.getLiteralPath(), false, I18nConstants.LANGUAGE_XHTML_LANG_DIFFERENT2, lang, xl);
                }
            }
        }
    }
    // security tags are a set (system|code)
    Element meta = element.getNamedChild(META);
    if (meta != null) {
        Set<String> tags = new HashSet<>();
        List<Element> list = new ArrayList<>();
        meta.getNamedChildren("security", list);
        int i = 0;
        for (Element e : list) {
            String s = e.getNamedChildValue("system") + "#" + e.getNamedChildValue("code");
            rule(errors, IssueType.BUSINESSRULE, e.line(), e.col(), stack.getLiteralPath() + ".meta.profile[" + Integer.toString(i) + "]", !tags.contains(s), I18nConstants.META_RES_SECURITY_DUPLICATE, s);
            tags.add(s);
            i++;
        }
    }
}

Example 40 with Meta

use of org.hl7.fhir.r5.model.Meta in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeMeta.

protected void composeMeta(Complex parent, String parentType, String name, Meta element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeElement(t, "Meta", name, element, index);
    if (element.hasVersionIdElement())
        composeId(t, "Meta", "versionId", element.getVersionIdElement(), -1);
    if (element.hasLastUpdatedElement())
        composeInstant(t, "Meta", "lastUpdated", element.getLastUpdatedElement(), -1);
    if (element.hasSourceElement())
        composeUri(t, "Meta", "source", element.getSourceElement(), -1);
    for (int i = 0; i < element.getProfile().size(); i++) composeCanonical(t, "Meta", "profile", element.getProfile().get(i), i);
    for (int i = 0; i < element.getSecurity().size(); i++) composeCoding(t, "Meta", "security", element.getSecurity().get(i), i);
    for (int i = 0; i < element.getTag().size(); i++) composeCoding(t, "Meta", "tag", element.getTag().get(i), i);
}