Examples with Range org.hl7.fhir.r5.model.Range used on opensource projects

Example 46 with Range

use of org.hl7.fhir.r5.model.Range in project molgenis by molgenis.

the class AttributeRequestMapperImpl method toAttribute.

private Attribute toAttribute(CreateAttributeRequest attributeRequest, EntityType entityType, @Nullable @CheckForNull Integer index) {
    Attribute attribute = attributeFactory.create();
    // set id/label/lookupIndex before setting other properties
    attribute.setIdAttribute(attributeRequest.getIdAttribute());
    attribute.setLabelAttribute(attributeRequest.getLabelAttribute());
    attribute.setLookupAttributeIndex(attributeRequest.getLookupAttributeIndex());
    String id = attributeRequest.getId();
    if (id != null) {
        attribute.setIdentifier(id);
    }
    attribute.setName(attributeRequest.getName());
    attribute.setEntity(entityType);
    Integer sequenceNumber = attributeRequest.getSequenceNr();
    if (sequenceNumber == null) {
        sequenceNumber = index;
    }
    if (sequenceNumber != null) {
        attribute.setSequenceNumber(sequenceNumber);
    }
    String type = attributeRequest.getType();
    if (type != null) {
        attribute.setDataType(AttributeType.toEnum(type));
    }
    Optional.ofNullable(attributeRequest.getMaxLength()).ifPresent(attribute::setMaxLength);
    EntityType refEntityType;
    String refEntityTypeId = attributeRequest.getRefEntityType();
    if (refEntityTypeId != null) {
        refEntityType = (EntityType) entityManager.getReference(entityTypeMetadata, refEntityTypeId);
        attribute.setRefEntity(refEntityType);
    }
    if (attributeRequest.getCascadeDelete() != null) {
        attribute.setCascadeDelete(attributeRequest.getCascadeDelete());
    }
    ImmutableList<Order> orderBy = attributeRequest.getOrderBy();
    attribute.setOrderBy(orderBy != null ? sortMapper.map(Sort.create(orderBy), entityType) : null);
    attribute.setExpression(attributeRequest.getExpression());
    Boolean nullable = attributeRequest.getNullable();
    if (nullable != null) {
        attribute.setNillable(nullable);
    }
    Boolean auto = attributeRequest.getAuto();
    if (auto != null) {
        attribute.setAuto(auto);
    }
    Boolean visible = attributeRequest.getVisible();
    if (visible != null) {
        attribute.setVisible(visible);
    }
    processI18nLabel(attributeRequest.getLabel(), attribute);
    processI18nDescription(attributeRequest.getDescription(), attribute);
    Boolean aggregatable = attributeRequest.getAggregatable();
    if (aggregatable != null) {
        attribute.setAggregatable(aggregatable);
    }
    List<String> enumOptions = attributeRequest.getEnumOptions();
    if (enumOptions != null) {
        attribute.setEnumOptions(enumOptions);
    }
    Range range = attributeRequest.getRange();
    if (range != null) {
        attribute.setRange(map(range));
    }
    Boolean readonly = attributeRequest.getReadonly();
    if (readonly != null) {
        attribute.setReadOnly(readonly);
    }
    Boolean unique = attributeRequest.getUnique();
    if (unique != null) {
        attribute.setUnique(unique);
    }
    attribute.setNullableExpression(attributeRequest.getNullableExpression());
    attribute.setVisibleExpression(attributeRequest.getVisibleExpression());
    attribute.setValidationExpression(attributeRequest.getValidationExpression());
    attribute.setDefaultValue(attributeRequest.getDefaultValue());
    return attribute;
}

Example 47 with Range

use of org.hl7.fhir.r5.model.Range in project dpc-app by CMSgov.

the class GroupResourceUnitTest method makeTestPatients.

private Map<UUID, Patient> makeTestPatients(int count, UUID orgId) {
    if (count > 88) {
        throw new IllegalStateException("Don't support building more than 88 patients..yet (need a better mbi generator)");
    }
    final Map<UUID, Patient> patients = Maps.newHashMap();
    while (count > 0) {
        UUID id = UUID.randomUUID();
        Patient patient = FHIRPatientBuilder.newBuild().withMbi(// makes MBI in range 4S41C00AA10 -> 4S41C00AA99
        "4S41C00AA" + (count + 10)).withId(id).withTestData().build();
        patients.put(id, patient);
        count--;
    }
    return patients;
}

Example 48 with Range

use of org.hl7.fhir.r5.model.Range in project clinical_quality_language by cqframework.

the class DataRequirementsProcessor method toFhirValue.

private DataType toFhirValue(ElmRequirementsContext context, Expression value) {
    if (value == null) {
        return null;
    }
    if (value instanceof Interval) {
        // TODO: Handle lowclosed/highclosed
        return new Period().setStartElement(toFhirDateTimeValue(context, ((Interval) value).getLow())).setEndElement(toFhirDateTimeValue(context, ((Interval) value).getHigh()));
    } else if (value instanceof Literal) {
        if (context.getTypeResolver().isDateTimeType(value.getResultType())) {
            return new DateTimeType(((Literal) value).getValue());
        } else if (context.getTypeResolver().isDateType(value.getResultType())) {
            return new DateType(((Literal) value).getValue());
        } else if (context.getTypeResolver().isIntegerType(value.getResultType())) {
            return new IntegerType(((Literal) value).getValue());
        } else if (context.getTypeResolver().isDecimalType(value.getResultType())) {
            return new DecimalType(((Literal) value).getValue());
        } else if (context.getTypeResolver().isStringType(value.getResultType())) {
            return new StringType(((Literal) value).getValue());
        }
    } else if (value instanceof DateTime) {
        DateTime dateTime = (DateTime) value;
        return new DateTimeType(toDateTimeString(toFhirValue(context, dateTime.getYear()), toFhirValue(context, dateTime.getMonth()), toFhirValue(context, dateTime.getDay()), toFhirValue(context, dateTime.getHour()), toFhirValue(context, dateTime.getMinute()), toFhirValue(context, dateTime.getSecond()), toFhirValue(context, dateTime.getMillisecond()), toFhirValue(context, dateTime.getTimezoneOffset())));
    } else if (value instanceof org.hl7.elm.r1.Date) {
        org.hl7.elm.r1.Date date = (org.hl7.elm.r1.Date) value;
        return new DateType(toDateString(toFhirValue(context, date.getYear()), toFhirValue(context, date.getMonth()), toFhirValue(context, date.getDay())));
    } else if (value instanceof Start) {
        DataType operand = toFhirValue(context, ((Start) value).getOperand());
        if (operand != null) {
            Period period = (Period) operand;
            return period.getStartElement();
        }
    } else if (value instanceof End) {
        DataType operand = toFhirValue(context, ((End) value).getOperand());
        if (operand != null) {
            Period period = (Period) operand;
            return period.getEndElement();
        }
    } else if (value instanceof ParameterRef) {
        if (context.getTypeResolver().isIntervalType(value.getResultType())) {
            Extension e = toExpression(context, (ParameterRef) value);
            org.hl7.cql.model.DataType pointType = ((IntervalType) value.getResultType()).getPointType();
            if (context.getTypeResolver().isDateTimeType(pointType) || context.getTypeResolver().isDateType(pointType)) {
                Period period = new Period();
                period.addExtension(e);
                return period;
            } else if (context.getTypeResolver().isQuantityType(pointType) || context.getTypeResolver().isIntegerType(pointType) || context.getTypeResolver().isDecimalType(pointType)) {
                Range range = new Range();
                range.addExtension(e);
                return range;
            } else {
                throw new IllegalArgumentException(String.format("toFhirValue not implemented for interval of %s", pointType.toString()));
            }
        } else // Boolean, Integer, Decimal, String, Quantity, Date, DateTime, Time, Coding, CodeableConcept
        if (context.getTypeResolver().isBooleanType(value.getResultType())) {
            BooleanType result = new BooleanType();
            result.addExtension(toExpression(context, (ParameterRef) value));
            return result;
        } else if (context.getTypeResolver().isIntegerType(value.getResultType())) {
            IntegerType result = new IntegerType();
            result.addExtension(toExpression(context, (ParameterRef) value));
            return result;
        } else if (context.getTypeResolver().isDecimalType(value.getResultType())) {
            DecimalType result = new DecimalType();
            result.addExtension(toExpression(context, (ParameterRef) value));
            return result;
        } else if (context.getTypeResolver().isQuantityType(value.getResultType())) {
            Quantity result = new Quantity();
            result.addExtension(toExpression(context, (ParameterRef) value));
            return result;
        } else if (context.getTypeResolver().isCodeType(value.getResultType())) {
            Coding result = new Coding();
            result.addExtension(toExpression(context, (ParameterRef) value));
            return result;
        } else if (context.getTypeResolver().isConceptType(value.getResultType())) {
            CodeableConcept result = new CodeableConcept();
            result.addExtension(toExpression(context, (ParameterRef) value));
            return result;
        } else if (context.getTypeResolver().isDateType(value.getResultType())) {
            DateType result = new DateType();
            result.addExtension(toExpression(context, (ParameterRef) value));
            return result;
        } else if (context.getTypeResolver().isDateTimeType(value.getResultType())) {
            DateTimeType result = new DateTimeType();
            result.addExtension(toExpression(context, (ParameterRef) value));
            return result;
        } else if (context.getTypeResolver().isTimeType(value.getResultType())) {
            TimeType result = new TimeType();
            result.addExtension(toExpression(context, (ParameterRef) value));
            return result;
        } else {
            throw new IllegalArgumentException(String.format("toFhirValue not implemented for parameter of type %s", value.getResultType().toString()));
        }
    }
    throw new IllegalArgumentException(String.format("toFhirValue not implemented for %s", value.getClass().getSimpleName()));
}

Example 49 with Range

use of org.hl7.fhir.r5.model.Range in project clinical_quality_language by cqframework.

the class Cql2ElmVisitor method parseDateTimeLiteral.

private Expression parseDateTimeLiteral(String input) {
    /*
DATETIME
        : '@'
            [0-9][0-9][0-9][0-9] // year
            (
                (
                    '-'[0-9][0-9] // month
                    (
                        (
                            '-'[0-9][0-9] // day
                            ('T' TIMEFORMAT?)?
                        )
                        | 'T'
                    )?
                )
                | 'T'
            )?
            ('Z' | ('+' | '-') [0-9][0-9]':'[0-9][0-9])? // timezone offset
        ;
*/
    Pattern dateTimePattern = Pattern.compile("(\\d{4})(((-(\\d{2}))(((-(\\d{2}))((T)((\\d{2})(\\:(\\d{2})(\\:(\\d{2})(\\.(\\d+))?)?)?)?)?)|(T))?)|(T))?((Z)|(([+-])(\\d{2})(\\:(\\d{2}))))?");
    // 1-------234-5--------678-9--------11--11-------1---1-------1---1-------1---1-----------------2------2----22---22-----2-------2---2-----------
    // ----------------------------------01--23-------4---5-------6---7-------8---9-----------------0------1----23---45-----6-------7---8-----------
    /*
            year - group 1
            month - group 5
            day - group 9
            day dateTime indicator - group 11
            hour - group 13
            minute - group 15
            second - group 17
            millisecond - group 19
            month dateTime indicator - group 20
            year dateTime indicator - group 21
            utc indicator - group 23
            timezone offset polarity - group 25
            timezone offset hour - group 26
            timezone offset minute - group 28
         */
    /*
        Pattern dateTimePattern =
                Pattern.compile("(\\d{4})(-(\\d{2}))?(-(\\d{2}))?((Z)|(T((\\d{2})(\\:(\\d{2})(\\:(\\d{2})(\\.(\\d+))?)?)?)?((Z)|(([+-])(\\d{2})(\\:?(\\d{2}))?))?))?");
                               //1-------2-3---------4-5---------67---8-91-------1---1-------1---1-------1---1-------------11---12-----2-------2----2---------------
                               //----------------------------------------0-------1---2-------3---4-------5---6-------------78---90-----1-------2----3---------------
*/
    Matcher matcher = dateTimePattern.matcher(input);
    if (matcher.matches()) {
        try {
            GregorianCalendar calendar = (GregorianCalendar) GregorianCalendar.getInstance();
            DateTime result = of.createDateTime();
            int year = Integer.parseInt(matcher.group(1));
            int month = -1;
            int day = -1;
            int hour = -1;
            int minute = -1;
            int second = -1;
            int millisecond = -1;
            result.setYear(libraryBuilder.createLiteral(year));
            if (matcher.group(5) != null) {
                month = Integer.parseInt(matcher.group(5));
                if (month < 0 || month > 12) {
                    throw new IllegalArgumentException(String.format("Invalid month in date/time literal (%s).", input));
                }
                result.setMonth(libraryBuilder.createLiteral(month));
            }
            if (matcher.group(9) != null) {
                day = Integer.parseInt(matcher.group(9));
                int maxDay = 31;
                switch(month) {
                    case 2:
                        maxDay = calendar.isLeapYear(year) ? 29 : 28;
                        break;
                    case 4:
                    case 6:
                    case 9:
                    case 11:
                        maxDay = 30;
                        break;
                    default:
                        break;
                }
                if (day < 0 || day > maxDay) {
                    throw new IllegalArgumentException(String.format("Invalid day in date/time literal (%s).", input));
                }
                result.setDay(libraryBuilder.createLiteral(day));
            }
            if (matcher.group(13) != null) {
                hour = Integer.parseInt(matcher.group(13));
                if (hour < 0 || hour > 24) {
                    throw new IllegalArgumentException(String.format("Invalid hour in date/time literal (%s).", input));
                }
                result.setHour(libraryBuilder.createLiteral(hour));
            }
            if (matcher.group(15) != null) {
                minute = Integer.parseInt(matcher.group(15));
                if (minute < 0 || minute >= 60 || (hour == 24 && minute > 0)) {
                    throw new IllegalArgumentException(String.format("Invalid minute in date/time literal (%s).", input));
                }
                result.setMinute(libraryBuilder.createLiteral(minute));
            }
            if (matcher.group(17) != null) {
                second = Integer.parseInt(matcher.group(17));
                if (second < 0 || second >= 60 || (hour == 24 && second > 0)) {
                    throw new IllegalArgumentException(String.format("Invalid second in date/time literal (%s).", input));
                }
                result.setSecond(libraryBuilder.createLiteral(second));
            }
            if (matcher.group(19) != null) {
                millisecond = Integer.parseInt(matcher.group(19));
                if (millisecond < 0 || (hour == 24 && millisecond > 0)) {
                    throw new IllegalArgumentException(String.format("Invalid millisecond in date/time literal (%s).", input));
                }
                result.setMillisecond(libraryBuilder.createLiteral(millisecond));
            }
            if (matcher.group(23) != null && matcher.group(23).equals("Z")) {
                result.setTimezoneOffset(libraryBuilder.createLiteral(0.0));
            }
            if (matcher.group(25) != null) {
                int offsetPolarity = matcher.group(25).equals("+") ? 1 : -1;
                if (matcher.group(28) != null) {
                    int hourOffset = Integer.parseInt(matcher.group(26));
                    if (hourOffset < 0 || hourOffset > 14) {
                        throw new IllegalArgumentException(String.format("Timezone hour offset is out of range in date/time literal (%s).", input));
                    }
                    int minuteOffset = Integer.parseInt(matcher.group(28));
                    if (minuteOffset < 0 || minuteOffset >= 60 || (hourOffset == 14 && minuteOffset > 0)) {
                        throw new IllegalArgumentException(String.format("Timezone minute offset is out of range in date/time literal (%s).", input));
                    }
                    result.setTimezoneOffset(libraryBuilder.createLiteral((double) (hourOffset + (minuteOffset / 60)) * offsetPolarity));
                } else {
                    if (matcher.group(26) != null) {
                        int hourOffset = Integer.parseInt(matcher.group(26));
                        if (hourOffset < 0 || hourOffset > 14) {
                            throw new IllegalArgumentException(String.format("Timezone hour offset is out of range in date/time literal (%s).", input));
                        }
                        result.setTimezoneOffset(libraryBuilder.createLiteral((double) (hourOffset * offsetPolarity)));
                    }
                }
            }
            if (result.getHour() == null && matcher.group(11) == null && matcher.group(20) == null && matcher.group(21) == null) {
                org.hl7.elm.r1.Date date = of.createDate();
                date.setYear(result.getYear());
                date.setMonth(result.getMonth());
                date.setDay(result.getDay());
                date.setResultType(libraryBuilder.resolveTypeName("System", "Date"));
                return date;
            }
            result.setResultType(libraryBuilder.resolveTypeName("System", "DateTime"));
            return result;
        } catch (RuntimeException e) {
            throw new IllegalArgumentException(String.format("Invalid date-time input (%s). Use ISO 8601 date time representation (yyyy-MM-ddThh:mm:ss.fff(Z|(+/-hh:mm)).", input), e);
        }
    } else {
        throw new IllegalArgumentException(String.format("Invalid date-time input (%s). Use ISO 8601 date time representation (yyyy-MM-ddThh:mm:ss.fff(Z|+/-hh:mm)).", input));
    }
}

Example 50 with Range

use of org.hl7.fhir.r5.model.Range in project FAAAST-Service by FraunhoferIOSB.

the class TypeExtractor method extractTypeInfo.

public static TypeInfo extractTypeInfo(Object obj) {
    if (obj == null) {
        return null;
    }
    Class<?> type = obj.getClass();
    if (SubmodelElement.class.isAssignableFrom(type)) {
        ElementValueTypeInfo.Builder builder = ElementValueTypeInfo.builder();
        SubmodelElement submodelElement = (SubmodelElement) obj;
        builder.type(ElementValueMapper.getValueClass(submodelElement.getClass()));
        if (AnnotatedRelationshipElement.class.isAssignableFrom(type)) {
            AnnotatedRelationshipElement annotatedRelationshipElement = (AnnotatedRelationshipElement) obj;
            annotatedRelationshipElement.getAnnotations().forEach(x -> builder.element(x.getIdShort(), extractTypeInfo(x)));
        } else if (SubmodelElementCollection.class.isAssignableFrom(type)) {
            SubmodelElementCollection submodelElementCollection = (SubmodelElementCollection) obj;
            submodelElementCollection.getValues().forEach(x -> builder.element(x.getIdShort(), extractTypeInfo(x)));
        } else if (Entity.class.isAssignableFrom(type)) {
            Entity entity = (Entity) obj;
            entity.getStatements().forEach(x -> builder.element(x.getIdShort(), extractTypeInfo(x)));
        } else if (Property.class.isAssignableFrom(obj.getClass())) {
            Property property = (Property) obj;
            builder.datatype(Datatype.fromName(property.getValueType()));
        } else if (Range.class.isAssignableFrom(obj.getClass())) {
            Range range = (Range) obj;
            builder.datatype(Datatype.fromName(range.getValueType()));
        }
        return builder.build();
    }
    if (Submodel.class.isAssignableFrom(type)) {
        Submodel submodel = (Submodel) obj;
        ContainerTypeInfo.Builder<Object> builder = ContainerTypeInfo.<Object>builder();
        builder.type(Submodel.class);
        submodel.getSubmodelElements().forEach(x -> builder.element(x.getIdShort(), extractTypeInfo(x)));
        return builder.build();
    }
    if (Collection.class.isAssignableFrom(type)) {
        Collection collection = (Collection) obj;
        ContainerTypeInfo.Builder<Integer> builder = ContainerTypeInfo.<Integer>builder();
        builder.type(Collection.class);
        builder.contentType(TypeToken.of(type).resolveType(COLLECTION_GENERIC_TOKEN).getRawType());
        Iterator iterator = collection.iterator();
        int i = 0;
        while (iterator.hasNext()) {
            builder.element(i, extractTypeInfo(iterator.next()));
            i++;
        }
        return builder.build();
    }
    if (Map.class.isAssignableFrom(type)) {
        Map map = (Map) obj;
        ContainerTypeInfo.Builder<String> builder = ContainerTypeInfo.<String>builder();
        builder.type(Map.class);
        builder.contentType(TypeToken.of(type).resolveType(MAP_GENERIC_TOKEN).getRawType());
        map.forEach((key, value) -> builder.element(key.toString(), extractTypeInfo(value)));
        return builder.build();
    }
    if (type.isArray()) {
        Object[] array = (Object[]) obj;
        ContainerTypeInfo.Builder<Integer> builder = ContainerTypeInfo.<Integer>builder();
        builder.type(Array.class);
        builder.contentType(type.getComponentType());
        for (int i = 0; i < array.length; i++) {
            builder.element(i, extractTypeInfo(array[i]));
        }
        return builder.build();
    }
    return ContainerTypeInfo.<Object>builder().build();
}