Examples with II org.hl7.v3.II used on opensource projects

Example 16 with II

use of org.hl7.v3.II in project kindling by HL7.

the class CDAGenerator method processAttribute.

private void processAttribute(List<Element> classes, List<ElementDefinition> diff, List<ElementDefinition> snapshot, Element cclss, String path, Element attr) throws FHIRFormatError {
    String n = attr.getAttribute("name");
    ElementDefinition ed = new ElementDefinition();
    ed.setPath(path + "." + n);
    ed.setMin(Integer.parseInt(attr.getAttribute("minimumMultiplicity")));
    ed.setMax(attr.getAttribute("maximumMultiplicity"));
    if (ed.getMax().equals("0"))
        return;
    seePath(ed);
    if (!Utilities.noString(attr.getAttribute("namespace")))
        ed.addExtension().setUrl("http://hl7.org/fhir/StructureDefinition/elementdefinition-namespace").setValue(new UriType(attr.getAttribute("namespace")));
    String type = getType(attr);
    if ("true".equals(attr.getAttribute("isImmutable"))) {
        if (primitiveTypes.containsKey(type))
            type = primitiveTypes.get(type);
        else
            throw new Error("Immutable attribute that is not a primitive type");
        ed.addRepresentation(PropertyRepresentation.XMLATTR);
    }
    if ("GTS".equals(type)) {
        ed.setMax("*");
        ed.addRepresentation(PropertyRepresentation.TYPEATTR);
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/IVL_TS");
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/EIVL_TS");
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/PIVL_TS");
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/SXPR_TS");
        ed.addExtension().setUrl("http://hl7.org/fhir/StructureDefinition/elementdefinition-defaulttype").setValue(new StringType("SXPR_TS"));
    } else if ("ANY".equals(type)) {
        ed.addRepresentation(PropertyRepresentation.TYPEATTR);
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/BL");
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/ED");
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/ST");
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/CD");
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/CV");
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/CE");
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/SC");
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/II");
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/TEL");
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/AD");
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/EN");
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/INT");
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/REAL");
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/PQ");
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/MO");
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/TS");
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/IVL_PQ");
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/IVL_TS");
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/PIVL_TS");
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/EIVL_TS");
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/SXPR_TS");
    } else if (isPrimitive(type))
        ed.addType().setCode(type);
    else if (Utilities.existsInList(type, "PN"))
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/EN");
    else if (Utilities.existsInList(type, "ON"))
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/ST");
    else if (Utilities.existsInList(type, "NARRATIVE")) {
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/StrucDoc.Text");
        ed.addRepresentation(PropertyRepresentation.CDATEXT);
    } else
        ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/" + type);
    if ("R".equals(attr.getAttribute("conformance")))
        ed.setMustSupport(true);
    if (attr.hasAttribute("defaultValue"))
        ed.setDefaultValue(buildValue(attr.getAttribute("defaultValue"), type, ed.getPath()));
    List<Element> enums = new ArrayList<Element>();
    XMLUtil.getNamedChildren(attr, "enumerationValue", enums);
    if (enums.size() == 1)
        ed.setFixed(buildValue(enums.get(0).getTextContent(), type, ed.getPath()));
    if (enums.size() > 1) {
    // throw new Error("todo: enums on "+ed.getPath());
    } else if (XMLUtil.getNamedChild(attr, "vocabulary") != null) {
        // <vocabulary codingStrength="CWE"><conceptDomain name="ActClass"/></vocabulary>
        Element vocab = XMLUtil.getNamedChild(attr, "vocabulary");
        String cs = vocab.getAttribute("codingStrength");
        String cd = XMLUtil.getNamedChildAttribute(vocab, "conceptDomain", "name");
        ElementDefinitionBindingComponent bd = ed.getBinding();
        bd.setStrength(cs.equals("CNE") ? BindingStrength.REQUIRED : BindingStrength.EXTENSIBLE);
        bd.setValueSet("http://terminology.hl7.org/ValueSet/v3-" + cd);
        v3vs.add(cd);
    }
    diff.add(ed);
    snapshot.add(popBase(ed));
}

Example 17 with II

use of org.hl7.v3.II in project kindling by HL7.

the class Publisher method generateConformanceStatement.

private void generateConformanceStatement(boolean full, String name, boolean register) throws Exception {
    pgen = new ProfileGenerator(page.getDefinitions(), page.getWorkerContext(), page, page.getGenDate(), page.getVersion(), dataElements, fpUsages, page.getFolders().rootDir, page.getUml(), page.getRc());
    CapabilityStatement cpbs = new CapabilityStatement();
    cpbs.setId(FormatUtilities.makeId(name));
    cpbs.setUrl("http://hl7.org/fhir/CapabilityStatement/" + name);
    cpbs.setVersion(page.getVersion().toCode());
    cpbs.setName("Base FHIR Capability Statement " + (full ? "(Full)" : "(Empty)"));
    cpbs.setStatus(PublicationStatus.DRAFT);
    cpbs.setExperimental(true);
    cpbs.setDate(page.getGenDate().getTime());
    cpbs.setPublisher("FHIR Project Team");
    cpbs.addContact().getTelecom().add(Factory.newContactPoint(ContactPointSystem.URL, "http://hl7.org/fhir"));
    cpbs.setKind(CapabilityStatementKind.CAPABILITY);
    cpbs.setSoftware(new CapabilityStatementSoftwareComponent());
    cpbs.getSoftware().setName("Insert your software name here...");
    cpbs.setFhirVersion(page.getVersion());
    cpbs.getFormat().add(Factory.newCode("xml"));
    cpbs.getFormat().add(Factory.newCode("json"));
    CapabilityStatementRestComponent rest = new CapabilityStatement.CapabilityStatementRestComponent();
    cpbs.getRest().add(rest);
    rest.setMode(RestfulCapabilityMode.SERVER);
    if (full) {
        rest.setDocumentation("All the functionality defined in FHIR");
        cpbs.setDescription("This is the base Capability Statement for FHIR. It represents a server that provides the full set of functionality defined by FHIR. It is provided to use as a template for system designers to build their own Capability Statements from");
    } else {
        rest.setDocumentation("An empty Capability Statement");
        cpbs.setDescription("This is the base Capability Statement for FHIR. It represents a server that provides the none of the functionality defined by FHIR. It is provided to use as a template for system designers to build their own Capability Statements from. A capability statement has to contain something, so this contains a read of a Capability Statement");
    }
    rest.setSecurity(new CapabilityStatementRestSecurityComponent());
    rest.getSecurity().setCors(true);
    rest.getSecurity().addService().setText("See http://docs.smarthealthit.org/").addCoding().setSystem("http://terminology.hl7.org/CodeSystem/restful-security-service").setCode("SMART-on-FHIR").setDisplay("SMART-on-FHIR");
    rest.getSecurity().setDescription("This is the Capability Statement to declare that the server supports SMART-on-FHIR. See the SMART-on-FHIR docs for the extension that would go with such a server");
    if (full) {
        for (String rn : page.getDefinitions().sortedResourceNames()) {
            ResourceDefn rd = page.getDefinitions().getResourceByName(rn);
            CapabilityStatementRestResourceComponent res = new CapabilityStatement.CapabilityStatementRestResourceComponent();
            rest.getResource().add(res);
            res.setType(rn);
            res.setProfile("http://hl7.org/fhir/StructureDefinition/" + rn);
            genConfInteraction(cpbs, res, TypeRestfulInteraction.READ, "Implemented per the specification (or Insert other doco here)");
            genConfInteraction(cpbs, res, TypeRestfulInteraction.VREAD, "Implemented per the specification (or Insert other doco here)");
            genConfInteraction(cpbs, res, TypeRestfulInteraction.UPDATE, "Implemented per the specification (or Insert other doco here)");
            genConfInteraction(cpbs, res, TypeRestfulInteraction.DELETE, "Implemented per the specification (or Insert other doco here)");
            genConfInteraction(cpbs, res, TypeRestfulInteraction.HISTORYINSTANCE, "Implemented per the specification (or Insert other doco here)");
            genConfInteraction(cpbs, res, TypeRestfulInteraction.HISTORYTYPE, "Implemented per the specification (or Insert other doco here)");
            genConfInteraction(cpbs, res, TypeRestfulInteraction.CREATE, "Implemented per the specification (or Insert other doco here)");
            genConfInteraction(cpbs, res, TypeRestfulInteraction.SEARCHTYPE, "Implemented per the specification (or Insert other doco here)");
            res.setConditionalCreate(true);
            res.setConditionalUpdate(true);
            res.setConditionalDelete(ConditionalDeleteStatus.MULTIPLE);
            res.addReferencePolicy(ReferenceHandlingPolicy.LITERAL);
            res.addReferencePolicy(ReferenceHandlingPolicy.LOGICAL);
            for (SearchParameterDefn i : rd.getSearchParams().values()) {
                res.getSearchParam().add(makeSearchParam(rn, i));
                if (i.getType().equals(SearchType.reference))
                    res.getSearchInclude().add(new StringType(rn + "." + i.getCode()));
            }
            for (String rni : page.getDefinitions().sortedResourceNames()) {
                ResourceDefn rdi = page.getDefinitions().getResourceByName(rni);
                for (SearchParameterDefn ii : rdi.getSearchParams().values()) {
                    if (ii.getType().equals(SearchType.reference) && ii.getTargets().contains(rn))
                        res.getSearchRevInclude().add(new StringType(rni + "." + ii.getCode()));
                }
            }
        }
        genConfInteraction(cpbs, rest, SystemRestfulInteraction.TRANSACTION, "Implemented per the specification (or Insert other doco here)");
        genConfInteraction(cpbs, rest, SystemRestfulInteraction.BATCH, "Implemented per the specification (or Insert other doco here)");
        genConfInteraction(cpbs, rest, SystemRestfulInteraction.HISTORYSYSTEM, "Implemented per the specification (or Insert other doco here)");
        genConfInteraction(cpbs, rest, SystemRestfulInteraction.SEARCHSYSTEM, "Implemented per the specification (or Insert other doco here)");
        for (ResourceDefn rd : page.getDefinitions().getBaseResources().values()) {
            for (SearchParameterDefn i : rd.getSearchParams().values()) rest.getSearchParam().add(makeSearchParam(rd.getName(), i));
            rest.getSearchParam().add(makeSearchParam("something", SearchParamType.STRING, "id", "some doco"));
            rest.getSearchParam().add(makeSearchParam("_list", SearchParamType.TOKEN, "Resource-list", "Retrieval of resources that are referenced by a List resource"));
            rest.getSearchParam().add(makeSearchParam("_has", SearchParamType.COMPOSITE, "Resource-has", "Provides support for reverse chaining"));
            rest.getSearchParam().add(makeSearchParam("_type", SearchParamType.TOKEN, "Resource-type", "Type of resource (when doing cross-resource search"));
            rest.getSearchParam().add(makeSearchParam("_sort", SearchParamType.TOKEN, "Resource-source", "How to sort the resources when returning"));
            rest.getSearchParam().add(makeSearchParam("_count", SearchParamType.NUMBER, "Resource-count", "How many resources to return"));
            rest.getSearchParam().add(makeSearchParam("_include", SearchParamType.TOKEN, "Resource-include", "Control over returning additional resources (see spec)"));
            rest.getSearchParam().add(makeSearchParam("_revinclude", SearchParamType.TOKEN, "Resource-revinclude", "Control over returning additional resources (see spec)"));
            rest.getSearchParam().add(makeSearchParam("_summary", SearchParamType.TOKEN, "Resource-summary", "What kind of information to return"));
            rest.getSearchParam().add(makeSearchParam("_elements", SearchParamType.STRING, "Resource-elements", "What kind of information to return"));
            rest.getSearchParam().add(makeSearchParam("_contained", SearchParamType.TOKEN, "Resource-contained", "Managing search into contained resources"));
            rest.getSearchParam().add(makeSearchParam("_containedType", SearchParamType.TOKEN, "Resource-containedType", "Managing search into contained resources"));
            for (Operation op : rd.getOperations()) rest.addOperation().setName(op.getName()).setDefinition("http://hl7.org/fhir/OperationDefinition/" + rd.getName().toLowerCase() + "-" + op.getName());
        }
        for (String rn : page.getDefinitions().sortedResourceNames()) {
            ResourceDefn r = page.getDefinitions().getResourceByName(rn);
            for (Operation op : r.getOperations()) rest.addOperation().setName(op.getName()).setDefinition("http://hl7.org/fhir/OperationDefinition/" + r.getName().toLowerCase() + "-" + op.getName());
        }
    } else {
    // don't add anything - the metadata operation is implicit
    // CapabilityStatementRestResourceComponent res = new CapabilityStatement.CapabilityStatementRestResourceComponent();
    // rest.getResource().add(res);
    // res.setType("CapabilityStatement");
    // genConfInteraction(cpbs, res, TypeRestfulInteraction.READ, "Read CapabilityStatement Resource");
    }
    if (register) {
        RenderingContext lrc = page.getRc().copy().setLocalPrefix("").setTooCostlyNoteEmpty(PageProcessor.TOO_MANY_CODES_TEXT_EMPTY).setTooCostlyNoteNotEmpty(PageProcessor.TOO_MANY_CODES_TEXT_NOT_EMPTY);
        RendererFactory.factory(cpbs, lrc).render(cpbs);
        FileOutputStream s = new FileOutputStream(page.getFolders().dstDir + "capabilitystatement-" + name + ".xml");
        new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(s, cpbs);
        s.close();
        s = new FileOutputStream(page.getFolders().dstDir + "capabilitystatement-" + name + ".canonical.xml");
        new XmlParser().setOutputStyle(OutputStyle.CANONICAL).compose(s, cpbs);
        s.close();
        cloneToXhtml("capabilitystatement-" + name + "", "Basic Capability Statement", true, "resource-instance:CapabilityStatement", "Capability Statement", null, wg("fhir"));
        s = new FileOutputStream(page.getFolders().dstDir + "capabilitystatement-" + name + ".json");
        new JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(s, cpbs);
        s.close();
        s = new FileOutputStream(page.getFolders().dstDir + "capabilitystatement-" + name + ".canonical.json");
        new JsonParser().setOutputStyle(OutputStyle.CANONICAL).compose(s, cpbs);
        s.close();
        jsonToXhtml("capabilitystatement-" + name, "Base Capability Statement", resource2Json(cpbs), "resource-instance:CapabilityStatement", "Capability Statement", null, wg("fhir"));
        s = new FileOutputStream(page.getFolders().dstDir + "capabilitystatement-" + name + ".ttl");
        new RdfParser().setOutputStyle(OutputStyle.PRETTY).compose(s, cpbs);
        s.close();
        ttlToXhtml("capabilitystatement-" + name, "Base Capability Statement", resource2Ttl(cpbs), "resource-instance:CapabilityStatement", "Capability Statement", null, wg("fhir"));
        Utilities.copyFile(new CSFile(page.getFolders().dstDir + "capabilitystatement-" + name + ".xml"), new CSFile(page.getFolders().dstDir + "examples" + File.separator + "capabilitystatement-" + name + ".xml"));
    }
    if (buildFlags.get("all")) {
        RenderingContext lrc = page.getRc().copy().setLocalPrefix("");
        RendererFactory.factory(cpbs, lrc).render(cpbs);
        deletefromFeed(ResourceType.CapabilityStatement, name, page.getResourceBundle());
        addToResourceFeed(cpbs, page.getResourceBundle());
    }
}

Example 18 with II

use of org.hl7.v3.II in project org.hl7.fhir.core by hapifhir.

the class InstanceValidator method buildFixedExpression.

private void buildFixedExpression(ElementDefinition ed, StringBuilder expression, String discriminator, ElementDefinition criteriaElement) throws DefinitionException {
    DataType fixed = criteriaElement.getFixed();
    if (fixed instanceof CodeableConcept) {
        CodeableConcept cc = (CodeableConcept) fixed;
        expression.append(" and ");
        buildCodeableConceptExpression(ed, expression, discriminator, cc);
    } else if (fixed instanceof Identifier) {
        Identifier ii = (Identifier) fixed;
        expression.append(" and ");
        buildIdentifierExpression(ed, expression, discriminator, ii);
    } else if (fixed instanceof Coding) {
        Coding c = (Coding) fixed;
        expression.append(" and ");
        buildCodingExpression(ed, expression, discriminator, c);
    } else {
        expression.append(" and (");
        if (fixed instanceof StringType) {
            Gson gson = new Gson();
            String json = gson.toJson((StringType) fixed);
            String escapedString = json.substring(json.indexOf(":") + 2);
            escapedString = escapedString.substring(0, escapedString.indexOf(",\"myStringValue") - 1);
            expression.append("'" + escapedString + "'");
        } else if (fixed instanceof UriType) {
            expression.append("'" + ((UriType) fixed).asStringValue() + "'");
        } else if (fixed instanceof IntegerType) {
            expression.append(((IntegerType) fixed).asStringValue());
        } else if (fixed instanceof DecimalType) {
            expression.append(((IntegerType) fixed).asStringValue());
        } else if (fixed instanceof BooleanType) {
            expression.append(((BooleanType) fixed).asStringValue());
        } else
            throw new DefinitionException(context.formatMessage(I18nConstants.UNSUPPORTED_FIXED_VALUE_TYPE_FOR_DISCRIMINATOR_FOR_SLICE__, discriminator, ed.getId(), fixed.getClass().getName()));
        expression.append(" in " + discriminator + ")");
    }
}

Example 19 with II

use of org.hl7.v3.II in project org.hl7.fhir.core by hapifhir.

the class InstanceValidator method buildPattternExpression.

private void buildPattternExpression(ElementDefinition ed, StringBuilder expression, String discriminator, ElementDefinition criteriaElement) throws DefinitionException {
    DataType pattern = criteriaElement.getPattern();
    if (pattern instanceof CodeableConcept) {
        CodeableConcept cc = (CodeableConcept) pattern;
        expression.append(" and ");
        buildCodeableConceptExpression(ed, expression, discriminator, cc);
    } else if (pattern instanceof Coding) {
        Coding c = (Coding) pattern;
        expression.append(" and ");
        buildCodingExpression(ed, expression, discriminator, c);
    } else if (pattern instanceof BooleanType || pattern instanceof IntegerType || pattern instanceof DecimalType) {
        expression.append(" and ");
        buildPrimitiveExpression(ed, expression, discriminator, pattern, false);
    } else if (pattern instanceof PrimitiveType) {
        expression.append(" and ");
        buildPrimitiveExpression(ed, expression, discriminator, pattern, true);
    } else if (pattern instanceof Identifier) {
        Identifier ii = (Identifier) pattern;
        expression.append(" and ");
        buildIdentifierExpression(ed, expression, discriminator, ii);
    } else if (pattern instanceof HumanName) {
        HumanName name = (HumanName) pattern;
        expression.append(" and ");
        buildHumanNameExpression(ed, expression, discriminator, name);
    } else if (pattern instanceof Address) {
        Address add = (Address) pattern;
        expression.append(" and ");
        buildAddressExpression(ed, expression, discriminator, add);
    } else {
        throw new DefinitionException(context.formatMessage(I18nConstants.UNSUPPORTED_FIXED_PATTERN_TYPE_FOR_DISCRIMINATOR_FOR_SLICE__, discriminator, ed.getId(), pattern.fhirType()));
    }
}

Example 20 with II

use of org.hl7.v3.II in project nia-patient-switching-standard-adaptor by NHSDigital.

the class ConsultationListMapperTest method setUpCompoundStatement.

private RCMRMT030101UK04CompoundStatement setUpCompoundStatement(String originalText, String display, String availabilityTime, boolean nullFlavorCode) {
    RCMRMT030101UK04CompoundStatement compoundStatement = new RCMRMT030101UK04CompoundStatement();
    II id = new II();
    id.setRoot(COMPOUND_STATEMENT_ID);
    CD cd = new CD();
    if (nullFlavorCode) {
        cd.setNullFlavor(CsNullFlavor.UNK);
    } else {
        cd.setOriginalText(originalText);
        cd.setDisplayName(display);
        cd.setCodeSystem("2.16.840.1.113883.2.1.6.2");
        cd.setCode("14L..00");
    }
    TS ts = new TS();
    if (availabilityTime != null) {
        ts.setValue(availabilityTime);
    } else {
        ts.setNullFlavor(CsNullFlavor.NI);
    }
    compoundStatement.setAvailabilityTime(ts);
    compoundStatement.getId().add(id);
    compoundStatement.setCode(cd);
    return compoundStatement;
}