Examples with Sample org.icgc.dcc.song.server.model.entity.Sample used on opensource projects

Example 6 with Sample

use of org.icgc.dcc.song.server.model.entity.Sample in project SONG by overture-stack.

the class SampleServiceTest method testCreateAndDeleteSample.

@Test
public void testCreateAndDeleteSample() {
    val specimenId = "SP2";
    val metadata = JsonUtils.fromSingleQuoted("{'ageCategory': 3, 'species': 'human'}");
    val s = Sample.create("", "101-IP-A", specimenId, "Amplified DNA");
    s.setInfo(metadata);
    val status = sampleService.create(DEFAULT_STUDY_ID, s);
    val id = s.getSampleId();
    assertThat(sampleService.isSampleExist(id)).isTrue();
    assertThat(id).startsWith("SA");
    assertThat(status).isEqualTo(id);
    Sample check = sampleService.read(id);
    assertThat(check).isEqualToComparingFieldByField(s);
    sampleService.delete(newArrayList(id));
    assertThat(sampleService.isSampleExist(id)).isFalse();
}

Example 7 with Sample

use of org.icgc.dcc.song.server.model.entity.Sample in project SONG by overture-stack.

the class SampleServiceTest method testUpdateSpecimenDNE.

@Test
public void testUpdateSpecimenDNE() {
    val randomSampleId = randomGenerator.generateRandomUUIDAsString();
    val sample = new Sample();
    sample.setSampleSubmitterId(randomGenerator.generateRandomUUIDAsString());
    sample.setSampleId(randomSampleId);
    sample.setSampleType(randomGenerator.randomElement(newArrayList(SAMPLE_TYPE)));
    sample.setSpecimenId(DEFAULT_SPECIMEN_ID);
    assertSongError(() -> sampleService.update(sample), SAMPLE_DOES_NOT_EXIST);
}