Examples with Specimen org.icgc.dcc.song.server.model.entity.Specimen used on opensource projects

Example 6 with Specimen

use of org.icgc.dcc.song.server.model.entity.Specimen in project SONG by overture-stack.

the class SpecimenServiceTest method testCreateAndDeleteSpecimen.

@Test
public void testCreateAndDeleteSpecimen() {
    val donorId = "DO2";
    Specimen s = Specimen.create("", "Specimen 101 Ipsilon Prime", donorId, "Tumour", "Cell line - derived from tumour");
    s.setInfo(JsonUtils.fromSingleQuoted("{'ageCategory': 42, 'status': 'deceased'}"));
    val status = specimenService.create(DEFAULT_STUDY_ID, s);
    val id = s.getSpecimenId();
    assertThat(id).startsWith("SP");
    Assertions.assertThat(status).isEqualTo(id);
    val check = specimenService.read(id);
    assertThat(s).isEqualToComparingFieldByField(check);
    val response = specimenService.delete(newArrayList(id));
    assertThat(specimenService.isSpecimenExist(id)).isFalse();
    assertThat(response).isEqualTo("OK");
}