Examples with DataObjectAO org.irods.jargon.core.pub.DataObjectAO used on opensource projects

Example 11 with DataObjectAO

use of org.irods.jargon.core.pub.DataObjectAO in project metalnx-web by irods-contrib.

the class GroupServiceImpl method updateReadPermissions.

@Override
public boolean updateReadPermissions(DataGridGroup group, Map<String, Boolean> addCollectionsToRead, Map<String, Boolean> removeCollectionsToRead) throws DataGridConnectionRefusedException {
    CollectionAO collectionAO = irodsServices.getCollectionAO();
    DataObjectAO dataObjectAO = irodsServices.getDataObjectAO();
    try {
        for (String path : addCollectionsToRead.keySet()) {
            if (collectionService.isCollection(path)) {
                collectionAO.setAccessPermissionReadAsAdmin(group.getAdditionalInfo(), path, group.getGroupname(), addCollectionsToRead.get(path));
            } else {
                dataObjectAO.setAccessPermissionReadInAdminMode(group.getAdditionalInfo(), path, group.getGroupname());
            }
        }
        for (String path : removeCollectionsToRead.keySet()) {
            if (collectionService.isCollection(path)) {
                collectionAO.removeAccessPermissionForUserAsAdmin(group.getAdditionalInfo(), path, group.getGroupname(), removeCollectionsToRead.get(path));
            } else {
                dataObjectAO.setAccessPermissionReadInAdminMode(group.getAdditionalInfo(), path, group.getGroupname());
            }
        }
        return true;
    } catch (JargonException | DataGridException e) {
        logger.error("Could not set read permission:", e);
    }
    return false;
}

Example 12 with DataObjectAO

use of org.irods.jargon.core.pub.DataObjectAO in project metalnx-web by irods-contrib.

the class MetadataServiceImpl method findMetadataValuesByPath.

@Override
public List<DataGridMetadata> findMetadataValuesByPath(String path) throws DataGridConnectionRefusedException {
    List<MetaDataAndDomainData> metadataList;
    List<DataGridMetadata> dataGridMetadataList = new ArrayList<>();
    List<MetaDataAndDomainData> resultingList;
    CollectionAndDataObjectListAndSearchAO collectionAndDataObjectListAndSearchAO = irodsServices.getCollectionAndDataObjectListAndSearchAO();
    try {
        Object obj = collectionAndDataObjectListAndSearchAO.getFullObjectForType(path);
        if (obj instanceof DataObject) {
            DataObjectAO dataObjectAO = irodsServices.getDataObjectAO();
            metadataList = dataObjectAO.findMetadataValuesForDataObject(path);
        } else {
            CollectionAO collectionAO = irodsServices.getCollectionAO();
            metadataList = collectionAO.findMetadataValuesForCollection(path);
        }
        // TODO2: Making sure all AVUs are unique. Jargon should do that.
        resultingList = new ArrayList<>();
        Set<Integer> setOfAlreadyListedAVUs = new HashSet<>();
        for (MetaDataAndDomainData avuForItem : metadataList) {
            int avuId = avuForItem.getAvuId();
            if (!setOfAlreadyListedAVUs.contains(avuId)) {
                resultingList.add(avuForItem);
                setOfAlreadyListedAVUs.add(avuId);
            }
        }
        for (MetaDataAndDomainData metadata : resultingList) {
            DataGridMetadata dataGridMetadata = new DataGridMetadata();
            dataGridMetadata.setAttribute(metadata.getAvuAttribute());
            dataGridMetadata.setValue(metadata.getAvuValue());
            dataGridMetadata.setUnit(metadata.getAvuUnit());
            dataGridMetadataList.add(dataGridMetadata);
        }
        Collections.sort(dataGridMetadataList);
    } catch (JargonQueryException e) {
        logger.error("Error getting metadata info from collection: " + e.toString());
    } catch (JargonException e) {
        logger.error("Error getting metadata info from dataobject: " + e.toString());
    }
    return dataGridMetadataList;
}

Example 13 with DataObjectAO

use of org.irods.jargon.core.pub.DataObjectAO in project metalnx-web by irods-contrib.

the class MetadataServiceImpl method delMetadataFromPath.

@Override
public boolean delMetadataFromPath(String path, String attribute, String value, String unit) throws DataGridConnectionRefusedException {
    CollectionAndDataObjectListAndSearchAO collectionAndDataObjectListAndSearchAO = irodsServices.getCollectionAndDataObjectListAndSearchAO();
    try {
        AvuData avuData = new AvuData(attribute, value, unit);
        Object obj = collectionAndDataObjectListAndSearchAO.getFullObjectForType(path);
        if (obj instanceof DataObject) {
            DataObjectAO dataObjectAO = irodsServices.getDataObjectAO();
            dataObjectAO.deleteAVUMetadata(path, avuData);
        } else {
            CollectionAO collectionAO = irodsServices.getCollectionAO();
            collectionAO.deleteAVUMetadata(path, avuData);
        }
    } catch (JargonException e) {
        logger.error("Error trying to delete metadata: " + e.toString());
        return false;
    }
    return true;
}

Example 14 with DataObjectAO

use of org.irods.jargon.core.pub.DataObjectAO in project metalnx-web by irods-contrib.

the class CollectionServiceImpl method getChecksum.

@Override
public String getChecksum(String path) throws DataGridConnectionRefusedException {
    logger.info("getChecksum()");
    logger.debug("Getting checksum of " + path);
    DataObjectAO dataObjectAO = irodsServices.getDataObjectAO();
    DataObject dataObject = null;
    try {
        dataObject = dataObjectAO.findByAbsolutePath(path);
    } catch (JargonException e) {
        logger.error("Could not find a data object matching " + path, e);
    }
    if (dataObject != null) {
        return dataObject.getChecksum();
    }
    return new String();
}

Example 15 with DataObjectAO

use of org.irods.jargon.core.pub.DataObjectAO in project metalnx-web by irods-contrib.

the class CollectionServiceImpl method listReplicasByResource.

@Override
public Map<DataGridCollectionAndDataObject, DataGridResource> listReplicasByResource(String path) throws DataGridConnectionRefusedException {
    logger.info("listReplicasByResource()");
    logger.info("Listing all replicas of " + path);
    Map<DataGridCollectionAndDataObject, DataGridResource> map = new HashMap<DataGridCollectionAndDataObject, DataGridResource>();
    String collectionAbsPath = null;
    String fileName = null;
    DataObjectAO dataObjectAO = irodsServices.getDataObjectAO();
    try {
        collectionAbsPath = path.substring(0, path.lastIndexOf(IRODS_PATH_SEPARATOR));
        fileName = path.substring(path.lastIndexOf(IRODS_PATH_SEPARATOR) + 1, path.length());
        List<DataObject> replicas = dataObjectAO.listReplicationsForFile(collectionAbsPath, fileName);
        for (DataObject replica : replicas) {
            DataGridCollectionAndDataObject dataGridCollectionAndDataObject = DataGridUtils.getDataGridCollectionAndDataObject(replica);
            DataGridResource dataGridResource = resourceService.find(replica.getResourceName());
            map.put(dataGridCollectionAndDataObject, dataGridResource);
        }
    } catch (JargonException e) {
        logger.error("Could not list replicas by resource for " + path);
    }
    return DataGridUtils.sortReplicaResourceMap(map);
}