Examples with JargonQueryException org.irods.jargon.core.query.JargonQueryException used on opensource projects

Example 6 with JargonQueryException

use of org.irods.jargon.core.query.JargonQueryException in project metalnx-web by irods-contrib.

the class CollectionServiceImpl method listCollectionsUnderPathThatMatchSearchText.

/**
 * Lists all collections under the given path that match a search term. Any
 * collection where the term appears in the beginning, middle, and the end of
 * its name will be retrieved.
 *
 * @param parentPath
 *            path to the parent collection where you are looking for items that
 *            match a search term
 * @param searchText
 *            term to be matched
 * @param offset
 *            partial start index
 * @param limit
 *            max number of items retrieved
 * @return list of data objects that match the given search text
 * @throws DataGridConnectionRefusedException
 */
private List<DataGridCollectionAndDataObject> listCollectionsUnderPathThatMatchSearchText(String parentPath, String searchText, int offset, int limit, int orderColumn, String orderDir) throws DataGridConnectionRefusedException {
    logger.info("listCollectionsUnderPathThatMatchSearchText()");
    logger.info("parentPath:{}", parentPath);
    logger.info("searchText:{}", searchText);
    logger.info("offset:{}", offset);
    logger.info("limit:{}", limit);
    logger.info("orderColumn:{}", orderColumn);
    logger.info("orderDir:{}", orderDir);
    SpecificQueryAO specificQueryAO = adminServices.getSpecificQueryAO();
    SpecificQueryDefinition queryDef = null;
    List<CollectionAndDataObjectListingEntry> itemsListingEntries = null;
    List<DataGridCollectionAndDataObject> dataGridItemsList = null;
    String sqlQueryAlias = "";
    try {
        sqlQueryAlias = SQL_LIST_COLLS_MATCHING_SEARCH_TEXT_ALIAS_WITH_ORDERING;
        ClientHints clientHints = this.irodsServices.getEnvironmentalInfoAO().retrieveClientHints(false);
        SpecificQueryProvider provider = specificQueryProviderFactory.instance(clientHints.whatTypeOfIcatIsIt());
        String query = provider.buildSelectCollectionsUnderPathThatMatchSearchText(parentPath, searchText, offset, limit, orderColumn, orderDir);
        // Creating Specific Query instance
        queryDef = new SpecificQueryDefinition();
        queryDef.setAlias(sqlQueryAlias);
        queryDef.setSql(query);
        // Creating spec query on iRODS
        specificQueryAO.addSpecificQuery(queryDef);
        // Executing specific query
        String zone = irodsServices.getCurrentUserZone();
        List<String> args = new ArrayList<String>();
        String collNameParam = null;
        if (IRODS_PATH_SEPARATOR.equals(parentPath)) {
            collNameParam = String.format("%%%s%%%%%s%%", IRODS_PATH_SEPARATOR, searchText);
        } else {
            collNameParam = String.format("%s%s%%%s%%", parentPath, IRODS_PATH_SEPARATOR, searchText);
        }
        args.add(collNameParam);
        args.add(parentPath);
        args.add(String.valueOf(offset));
        args.add(String.valueOf(limit));
        SpecificQuery specQuery = SpecificQuery.instanceArguments(sqlQueryAlias, args, 0, zone);
        logger.debug("specificQuery for text search:{}", specQuery);
        SpecificQueryResultSet queryResultSet = specificQueryAO.executeSpecificQueryUsingAlias(specQuery, MAX_RESULTS_PER_PAGE, 0);
        // Mapping spec query results to DataGrid* objects
        itemsListingEntries = DataGridUtils.mapCollectionQueryResultSetToDataGridObjects(queryResultSet);
        dataGridItemsList = DataGridUtils.mapListingEntryToDataGridCollectionAndDataObject(itemsListingEntries);
    } catch (JargonException | JargonQueryException | UnsupportedDataGridFeatureException e) {
        logger.error("Could not execute specific query to find collections matching a search text. ", e);
    } finally {
        try {
            // after running the user specific query, we need to remove from the database
            specificQueryAO.removeSpecificQueryByAlias(sqlQueryAlias);
        } catch (JargonException e) {
            logger.error("Could not remove specific query {}: ", sqlQueryAlias, e.getMessage());
        }
    }
    return dataGridItemsList;
}

Example 7 with JargonQueryException

use of org.irods.jargon.core.query.JargonQueryException in project metalnx-web by irods-contrib.

the class CollectionServiceImpl method getSubCollectionsAndDataObjectsUnderPathThatMatchSearchTextPaginated.

@Override
public List<DataGridCollectionAndDataObject> getSubCollectionsAndDataObjectsUnderPathThatMatchSearchTextPaginated(String parentPath, String searchText, int pageNum, int pageSize, int orderColumn, String orderDir, DataGridPageContext pageContext) throws DataGridDataNotFoundException, DataGridQueryException, DataGridException {
    logger.info("getSubCollectionsAndDataObjectsUnderPathThatMatchSearchTextPaginated()");
    List<DataGridCollectionAndDataObject> dataGridCollectionAndDataObjects = new ArrayList<>();
    List<DataGridCollectionAndDataObject> dataGridCollections = null;
    List<DataGridCollectionAndDataObject> dataGridObjects = null;
    int totalCollections = 0;
    int totalDataObjects = 0;
    int startIndex = (pageNum - 1) * pageSize;
    int endIndex = pageNum * pageSize - 1;
    int endIndexForDataObjs;
    int endIndexForCollections;
    try {
        totalCollections = getTotalCollectionsUnderPathThatMatchSearchText(parentPath, searchText);
        totalDataObjects = getTotalDataObjectsUnderPathThatMatchSearchText(parentPath, searchText);
        pageContext.setStartItemNumber(startIndex + 1);
        pageContext.setTotalNumberOfItems(totalCollections + totalDataObjects);
        if (endIndex + 1 <= totalCollections) {
            dataGridCollections = listCollectionsUnderPathThatMatchSearchText(parentPath, searchText, startIndex, pageSize, orderColumn, orderDir);
            int collectionEntriesSize = dataGridCollections.size();
            endIndexForCollections = collectionEntriesSize;
            dataGridCollectionAndDataObjects = dataGridCollections.subList(0, endIndexForCollections);
            pageContext.setEndItemNumber(pageContext.getStartItemNumber() + endIndexForCollections - 1);
        } else if (startIndex + 1 > totalCollections) {
            dataGridObjects = listDataObjectsUnderPathThatMatchSearchText(parentPath, searchText, startIndex - totalCollections, pageSize, orderColumn, orderDir);
            pageContext.setEndItemNumber(pageContext.getStartItemNumber() + dataGridObjects.size() - 1);
            dataGridCollectionAndDataObjects.addAll(dataGridObjects);
        } else {
            dataGridCollections = listCollectionsUnderPathThatMatchSearchText(parentPath, searchText, startIndex, pageSize, orderColumn, orderDir);
            endIndexForDataObjs = pageSize - totalCollections % pageSize;
            dataGridObjects = listDataObjectsUnderPathThatMatchSearchText(parentPath, searchText, 0, endIndexForDataObjs, orderColumn, orderDir);
            endIndexForDataObjs = endIndexForDataObjs > dataGridObjects.size() ? dataGridObjects.size() : endIndexForDataObjs;
            dataGridCollectionAndDataObjects.addAll(dataGridCollections);
            dataGridCollectionAndDataObjects.addAll(dataGridObjects);
            pageContext.setEndItemNumber(pageContext.getStartItemNumber() + endIndexForDataObjs + dataGridCollections.size() - 1);
        }
    } catch (DataNotFoundException e) {
        logger.error("Could not find items under path: {}", e.getMessage());
        throw new DataGridDataNotFoundException(e.getMessage());
    } catch (JargonQueryException e) {
        logger.error("Could not query catalog for items under path: {}", e.getMessage());
        throw new DataGridQueryException(e.getMessage());
    }
    return dataGridCollectionAndDataObjects;
}

Example 8 with JargonQueryException

use of org.irods.jargon.core.query.JargonQueryException in project metalnx-web by irods-contrib.

the class SpecQueryServiceImpl method searchByMetadata.

@Override
public SpecificQueryResultSet searchByMetadata(List<DataGridMetadataSearch> metadataSearch, String zone, boolean searchAgainstColls, DataGridPageContext pageContext, int offset, int limit) throws DataGridConnectionRefusedException, JargonException {
    SpecificQueryAO specificQueryAO = null;
    SpecificQuery specQuery = null;
    SpecificQueryResultSet queryResultSet = null;
    String userSQLAlias = "metalnxUserQuery_" + System.currentTimeMillis();
    try {
        specificQueryAO = adminServices.getSpecificQueryAO();
        ClientHints clientHints = this.irodsServices.getEnvironmentalInfoAO().retrieveClientHints(false);
        SpecificQueryProvider provider = specificQueryProviderFactory.instance(clientHints.whatTypeOfIcatIsIt());
        String query = provider.buildSpecificQueryForMetadataSearch(metadataSearch, zone, searchAgainstColls);
        // Creating Specific Query instance
        SpecificQueryDefinition queryDef = new SpecificQueryDefinition();
        queryDef.setAlias(userSQLAlias);
        queryDef.setSql(query);
        // Creating spec query on iRODS
        specificQueryAO.addSpecificQuery(queryDef);
        specQuery = SpecificQuery.instanceWithNoArguments(userSQLAlias, 0, zone);
        logger.info("Specific query: {}", query.toString());
        queryResultSet = specificQueryAO.executeSpecificQueryUsingAlias(specQuery, 99999, 0);
    } catch (JargonException e) {
        logger.error("Could not get specific query: ", e);
        throw e;
    } catch (JargonQueryException e) {
        logger.error("Could not get specific query: ", e);
        throw new JargonException(e);
    } catch (UnsupportedDataGridFeatureException e) {
        logger.error("Could not get specific query: ", e);
        throw new JargonException(e);
    } finally {
        try {
            // after running the user specific query, we need to remove from the database
            specificQueryAO.removeSpecificQueryByAlias(userSQLAlias);
        } catch (JargonException e) {
            logger.error("Could not remove specific query {}: ", userSQLAlias, e.getMessage());
        }
    }
    return queryResultSet;
}