Examples with JDOMException org.jdom.JDOMException used on opensource projects

Example 71 with JDOMException

use of org.jdom.JDOMException in project vcell by virtualcell.

the class XmlUtil method readXML.

// useful for the translators.
public static Document readXML(Reader reader, String schemaLocation, String parserClass, String schemaLocationPropName) throws RuntimeException {
    SAXBuilder builder = null;
    Document sDoc = null;
    GenericXMLErrorHandler errorHandler = new GenericXMLErrorHandler();
    try {
        if (schemaLocation != null && schemaLocation.length() > 0) {
            // ignores the parserClass, since xerces is the only validating parser we have
            builder = new SAXBuilder("org.apache.xerces.parsers.SAXParser", true);
            builder.setFeature("http://xml.org/sax/features/validation", true);
            builder.setFeature("http://apache.org/xml/features/validation/schema", true);
            builder.setErrorHandler(errorHandler);
            builder.setProperty(schemaLocationPropName, schemaLocation);
        } else {
            // ignore schemaLocationPropName
            if (parserClass == null) {
                // not necessarily 'xerces'
                builder = new SAXBuilder(false);
            } else {
                builder = new SAXBuilder(parserClass, false);
            }
            builder.setErrorHandler(errorHandler);
        }
        sDoc = builder.build(reader);
        // ----- Element root = null;
        // ----- root = sDoc.getRootElement();
        // flush/replace previous error log with every read.
        String errorHandlerLog = errorHandler.getErrorLog();
        if (errorHandlerLog.length() > 0) {
            System.out.println(errorHandlerLog);
            XmlUtil.errorLog = errorHandlerLog;
        } else {
            XmlUtil.errorLog = "";
        }
    } catch (JDOMException e) {
        e.printStackTrace();
        throw new RuntimeException("source document is not well-formed\n" + e.getMessage());
    } catch (IOException e) {
        e.printStackTrace();
        throw new RuntimeException("Unable to read source document\n" + e.getMessage());
    }
    return sDoc;
}

Example 72 with JDOMException

use of org.jdom.JDOMException in project vcell by virtualcell.

the class SBMLUtils method readXML.

public static Element readXML(Reader reader) throws IOException, SbmlException {
    try {
        SAXBuilder builder = new SAXBuilder(false);
        Document sDoc = builder.build(reader);
        Element root = sDoc.getRootElement();
        return root;
    } catch (JDOMException e) {
        e.printStackTrace(System.out);
        throw new SbmlException(e.getMessage());
    }
}