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Example 26 with XYPlot

use of org.jfree.chart.plot.XYPlot in project processdash by dtuma.

the class TimeLogPhaseWaterfallChart method createChart.

private JFreeChart createChart(IntervalXYDataset dataset, ProcessUtil process, List<String> phases, GapSkipTracker gaps) {
    JFreeChart result = ChartFactory.createXYBarChart(null, null, true, null, dataset, PlotOrientation.VERTICAL, false, true, false);
    XYPlot xyplot = (XYPlot) result.getPlot();
    DateAxis dateAxis = new DateAxis(null);
    dateAxis.setTickMarksVisible(false);
    dateAxis.setTickLabelsVisible(false);
    dateAxis.setLowerMargin(0.01);
    dateAxis.setUpperMargin(0.01);
    setupGaps(gaps, dateAxis, xyplot);
    xyplot.setDomainAxis(dateAxis);
    String[] phaseNameList = new String[phases.size()];
    for (int i = 0; i < phaseNameList.length; i++) phaseNameList[i] = Translator.translate(phases.get(i));
    SymbolAxis symbolaxis = new SymbolAxis(null, phaseNameList);
    symbolaxis.setGridBandsVisible(false);
    xyplot.setRangeAxis(symbolaxis);
    final XYBarRenderer renderer = (XYBarRenderer) xyplot.getRenderer();
    renderer.setUseYInterval(true);
    renderer.setDrawBarOutline(true);
    renderer.setBaseOutlinePaint(Color.black);
    new PhaseChartColorer(process, phases) {

        public void setItemColor(Object key, int pos, Color c) {
            renderer.setSeriesPaint(pos, c);
        }
    }.run();
    int exceptionSeries = dataset.getSeriesCount() - 1;
    renderer.setSeriesPaint(exceptionSeries, EXCEPTION_PAINT);
    renderer.setSeriesFillPaint(exceptionSeries, EXCEPTION_PAINT);
    renderer.setSeriesOutlinePaint(exceptionSeries, EXCEPTION_PAINT);
    renderer.setBaseToolTipGenerator(new TooltipGenerator());
    xyplot.setBackgroundPaint(Color.white);
    xyplot.setDomainGridlinesVisible(false);
    xyplot.setRangeGridlinePaint(Color.lightGray);
    xyplot.setDrawingSupplier(DRAWING_SUPPLIER_FACTORY.newDrawingSupplier());
    result.setAntiAlias(false);
    result.setTextAntiAlias(true);
    parameters.put("title", resources.getString("Title"));
    return result;
}
Also used : DateAxis(org.jfree.chart.axis.DateAxis) XYPlot(org.jfree.chart.plot.XYPlot) PhaseChartColorer(net.sourceforge.processdash.ui.lib.chart.PhaseChartColorer) Color(java.awt.Color) JFreeChart(org.jfree.chart.JFreeChart) XYBarRenderer(org.jfree.chart.renderer.xy.XYBarRenderer) SymbolAxis(org.jfree.chart.axis.SymbolAxis)

Example 27 with XYPlot

use of org.jfree.chart.plot.XYPlot in project pentaho-platform by pentaho.

the class JFreeChartEngine method updatePlot.

private static void updatePlot(final Plot plot, final ChartDefinition chartDefinition) {
    plot.setBackgroundPaint(chartDefinition.getPlotBackgroundPaint());
    plot.setBackgroundImage(chartDefinition.getPlotBackgroundImage());
    plot.setNoDataMessage(chartDefinition.getNoDataMessage());
    // create a custom palette if it was defined
    if (chartDefinition.getPaintSequence() != null) {
        DefaultDrawingSupplier drawingSupplier = new DefaultDrawingSupplier(chartDefinition.getPaintSequence(), DefaultDrawingSupplier.DEFAULT_OUTLINE_PAINT_SEQUENCE, DefaultDrawingSupplier.DEFAULT_STROKE_SEQUENCE, DefaultDrawingSupplier.DEFAULT_OUTLINE_STROKE_SEQUENCE, DefaultDrawingSupplier.DEFAULT_SHAPE_SEQUENCE);
        plot.setDrawingSupplier(drawingSupplier);
    }
    // TODO define outline stroke
    plot.setOutlineStroke(null);
    if (plot instanceof CategoryPlot) {
        CategoryPlot categoryPlot = (CategoryPlot) plot;
        CategoryDatasetChartDefinition categoryDatasetChartDefintion = (CategoryDatasetChartDefinition) chartDefinition;
        categoryPlot.setOrientation(categoryDatasetChartDefintion.getOrientation());
        CategoryAxis domainAxis = categoryPlot.getDomainAxis();
        if (domainAxis != null) {
            domainAxis.setLabel(categoryDatasetChartDefintion.getDomainTitle());
            domainAxis.setLabelFont(categoryDatasetChartDefintion.getDomainTitleFont());
            if (categoryDatasetChartDefintion.getDomainTickFont() != null) {
                domainAxis.setTickLabelFont(categoryDatasetChartDefintion.getDomainTickFont());
            }
            domainAxis.setCategoryLabelPositions(categoryDatasetChartDefintion.getCategoryLabelPositions());
        }
        NumberAxis numberAxis = (NumberAxis) categoryPlot.getRangeAxis();
        if (numberAxis != null) {
            numberAxis.setLabel(categoryDatasetChartDefintion.getRangeTitle());
            numberAxis.setLabelFont(categoryDatasetChartDefintion.getRangeTitleFont());
            if (categoryDatasetChartDefintion.getRangeMinimum() != ValueAxis.DEFAULT_LOWER_BOUND) {
                numberAxis.setLowerBound(categoryDatasetChartDefintion.getRangeMinimum());
            }
            if (categoryDatasetChartDefintion.getRangeMaximum() != ValueAxis.DEFAULT_UPPER_BOUND) {
                numberAxis.setUpperBound(categoryDatasetChartDefintion.getRangeMaximum());
            }
            if (categoryDatasetChartDefintion.getRangeTickFormat() != null) {
                numberAxis.setNumberFormatOverride(categoryDatasetChartDefintion.getRangeTickFormat());
            }
            if (categoryDatasetChartDefintion.getRangeTickFont() != null) {
                numberAxis.setTickLabelFont(categoryDatasetChartDefintion.getRangeTickFont());
            }
            if (categoryDatasetChartDefintion.getRangeTickUnits() != null) {
                numberAxis.setTickUnit(new NumberTickUnit(categoryDatasetChartDefintion.getRangeTickUnits()));
            }
        }
    }
    if (plot instanceof PiePlot) {
        PiePlot pie = (PiePlot) plot;
        PieDatasetChartDefinition pieDefinition = (PieDatasetChartDefinition) chartDefinition;
        pie.setInteriorGap(pieDefinition.getInteriorGap());
        pie.setStartAngle(pieDefinition.getStartAngle());
        pie.setLabelFont(pieDefinition.getLabelFont());
        if (pieDefinition.getLabelPaint() != null) {
            pie.setLabelPaint(pieDefinition.getLabelPaint());
        }
        pie.setLabelBackgroundPaint(pieDefinition.getLabelBackgroundPaint());
        if (pieDefinition.isLegendIncluded()) {
            // $NON-NLS-1$
            StandardPieSectionLabelGenerator labelGen = new StandardPieSectionLabelGenerator("{0}");
            pie.setLegendLabelGenerator(labelGen);
        }
        if (pieDefinition.getExplodedSlices() != null) {
            for (Iterator iter = pieDefinition.getExplodedSlices().iterator(); iter.hasNext(); ) {
                pie.setExplodePercent((Comparable) iter.next(), .30);
            }
        }
        pie.setLabelGap(pieDefinition.getLabelGap());
        if (!pieDefinition.isDisplayLabels()) {
            pie.setLabelGenerator(null);
        } else {
            if (pieDefinition.isLegendIncluded()) {
                // $NON-NLS-1$
                StandardPieSectionLabelGenerator labelGen = new StandardPieSectionLabelGenerator("{1} ({2})");
                pie.setLabelGenerator(labelGen);
            } else {
                // $NON-NLS-1$
                StandardPieSectionLabelGenerator labelGen = new StandardPieSectionLabelGenerator("{0} = {1} ({2})");
                pie.setLabelGenerator(labelGen);
            }
        }
    }
    if (plot instanceof MultiplePiePlot) {
        MultiplePiePlot pies = (MultiplePiePlot) plot;
        CategoryDatasetChartDefinition categoryDatasetChartDefintion = (CategoryDatasetChartDefinition) chartDefinition;
        pies.setDataset(categoryDatasetChartDefintion);
    }
    if (plot instanceof MeterPlot) {
        MeterPlot meter = (MeterPlot) plot;
        DialWidgetDefinition widget = (DialWidgetDefinition) chartDefinition;
        List intervals = widget.getIntervals();
        Iterator intervalIterator = intervals.iterator();
        while (intervalIterator.hasNext()) {
            MeterInterval interval = (MeterInterval) intervalIterator.next();
            meter.addInterval(interval);
        }
        meter.setNeedlePaint(widget.getNeedlePaint());
        meter.setDialShape(widget.getDialShape());
        meter.setDialBackgroundPaint(widget.getPlotBackgroundPaint());
        meter.setRange(new Range(widget.getMinimum(), widget.getMaximum()));
    }
    if (plot instanceof XYPlot) {
        XYPlot xyPlot = (XYPlot) plot;
        if (chartDefinition instanceof XYSeriesCollectionChartDefinition) {
            XYSeriesCollectionChartDefinition xySeriesCollectionChartDefintion = (XYSeriesCollectionChartDefinition) chartDefinition;
            xyPlot.setOrientation(xySeriesCollectionChartDefintion.getOrientation());
            ValueAxis domainAxis = xyPlot.getDomainAxis();
            if (domainAxis != null) {
                domainAxis.setLabel(xySeriesCollectionChartDefintion.getDomainTitle());
                domainAxis.setLabelFont(xySeriesCollectionChartDefintion.getDomainTitleFont());
                domainAxis.setVerticalTickLabels(xySeriesCollectionChartDefintion.isDomainVerticalTickLabels());
                if (xySeriesCollectionChartDefintion.getDomainTickFormat() != null) {
                    ((NumberAxis) domainAxis).setNumberFormatOverride(xySeriesCollectionChartDefintion.getDomainTickFormat());
                }
                if (xySeriesCollectionChartDefintion.getDomainTickFont() != null) {
                    domainAxis.setTickLabelFont(xySeriesCollectionChartDefintion.getDomainTickFont());
                }
                if (xySeriesCollectionChartDefintion.getDomainMinimum() != ValueAxis.DEFAULT_LOWER_BOUND) {
                    domainAxis.setLowerBound(xySeriesCollectionChartDefintion.getDomainMinimum());
                }
                if (xySeriesCollectionChartDefintion.getDomainMaximum() != ValueAxis.DEFAULT_UPPER_BOUND) {
                    domainAxis.setUpperBound(xySeriesCollectionChartDefintion.getDomainMaximum());
                }
            }
            ValueAxis rangeAxis = xyPlot.getRangeAxis();
            if (rangeAxis != null) {
                rangeAxis.setLabel(xySeriesCollectionChartDefintion.getRangeTitle());
                rangeAxis.setLabelFont(xySeriesCollectionChartDefintion.getRangeTitleFont());
                if (xySeriesCollectionChartDefintion.getRangeMinimum() != ValueAxis.DEFAULT_LOWER_BOUND) {
                    rangeAxis.setLowerBound(xySeriesCollectionChartDefintion.getRangeMinimum());
                }
                if (xySeriesCollectionChartDefintion.getRangeMaximum() != ValueAxis.DEFAULT_UPPER_BOUND) {
                    rangeAxis.setUpperBound(xySeriesCollectionChartDefintion.getRangeMaximum());
                }
                if (xySeriesCollectionChartDefintion.getRangeMinimum() != ValueAxis.DEFAULT_LOWER_BOUND) {
                    rangeAxis.setLowerBound(xySeriesCollectionChartDefintion.getRangeMinimum());
                }
                if (xySeriesCollectionChartDefintion.getRangeMaximum() != ValueAxis.DEFAULT_UPPER_BOUND) {
                    rangeAxis.setUpperBound(xySeriesCollectionChartDefintion.getRangeMaximum());
                }
                if (xySeriesCollectionChartDefintion.getRangeTickFormat() != null) {
                    ((NumberAxis) rangeAxis).setNumberFormatOverride(xySeriesCollectionChartDefintion.getRangeTickFormat());
                }
                if (xySeriesCollectionChartDefintion.getRangeTickFont() != null) {
                    rangeAxis.setTickLabelFont(xySeriesCollectionChartDefintion.getRangeTickFont());
                }
            }
        } else if (chartDefinition instanceof TimeSeriesCollectionChartDefinition) {
            TimeSeriesCollectionChartDefinition timeSeriesCollectionChartDefintion = (TimeSeriesCollectionChartDefinition) chartDefinition;
            xyPlot.setOrientation(timeSeriesCollectionChartDefintion.getOrientation());
            ValueAxis domainAxis = xyPlot.getDomainAxis();
            if (domainAxis != null) {
                domainAxis.setLabel(timeSeriesCollectionChartDefintion.getDomainTitle());
                domainAxis.setLabelFont(timeSeriesCollectionChartDefintion.getDomainTitleFont());
                domainAxis.setVerticalTickLabels(timeSeriesCollectionChartDefintion.isDomainVerticalTickLabels());
                if (domainAxis instanceof DateAxis) {
                    DateAxis da = (DateAxis) domainAxis;
                    if (timeSeriesCollectionChartDefintion.getDateMinimum() != null) {
                        da.setMinimumDate(timeSeriesCollectionChartDefintion.getDateMinimum());
                    }
                    if (timeSeriesCollectionChartDefintion.getDateMaximum() != null) {
                        da.setMaximumDate(timeSeriesCollectionChartDefintion.getDateMaximum());
                    }
                }
            }
            ValueAxis rangeAxis = xyPlot.getRangeAxis();
            if (rangeAxis != null) {
                rangeAxis.setLabel(timeSeriesCollectionChartDefintion.getRangeTitle());
                rangeAxis.setLabelFont(timeSeriesCollectionChartDefintion.getRangeTitleFont());
                if (timeSeriesCollectionChartDefintion.getRangeMinimum() != ValueAxis.DEFAULT_LOWER_BOUND) {
                    rangeAxis.setLowerBound(timeSeriesCollectionChartDefintion.getRangeMinimum());
                }
                if (timeSeriesCollectionChartDefintion.getRangeMaximum() != ValueAxis.DEFAULT_UPPER_BOUND) {
                    rangeAxis.setUpperBound(timeSeriesCollectionChartDefintion.getRangeMaximum());
                }
            }
        } else if (chartDefinition instanceof XYZSeriesCollectionChartDefinition) {
            XYZSeriesCollectionChartDefinition xyzSeriesCollectionChartDefintion = (XYZSeriesCollectionChartDefinition) chartDefinition;
            xyPlot.setOrientation(xyzSeriesCollectionChartDefintion.getOrientation());
            ValueAxis domainAxis = xyPlot.getDomainAxis();
            if (domainAxis != null) {
                domainAxis.setLabel(xyzSeriesCollectionChartDefintion.getDomainTitle());
                domainAxis.setLabelFont(xyzSeriesCollectionChartDefintion.getDomainTitleFont());
                domainAxis.setVerticalTickLabels(xyzSeriesCollectionChartDefintion.isDomainVerticalTickLabels());
                if (xyzSeriesCollectionChartDefintion.getDomainMinimum() != ValueAxis.DEFAULT_LOWER_BOUND) {
                    domainAxis.setLowerBound(xyzSeriesCollectionChartDefintion.getDomainMinimum());
                }
                if (xyzSeriesCollectionChartDefintion.getDomainMaximum() != ValueAxis.DEFAULT_UPPER_BOUND) {
                    domainAxis.setUpperBound(xyzSeriesCollectionChartDefintion.getDomainMaximum());
                }
                if (xyzSeriesCollectionChartDefintion.getDomainTickFormat() != null) {
                    ((NumberAxis) domainAxis).setNumberFormatOverride(xyzSeriesCollectionChartDefintion.getDomainTickFormat());
                }
                if (xyzSeriesCollectionChartDefintion.getDomainTickFont() != null) {
                    domainAxis.setTickLabelFont(xyzSeriesCollectionChartDefintion.getDomainTickFont());
                }
            }
            ValueAxis rangeAxis = xyPlot.getRangeAxis();
            if (rangeAxis != null) {
                rangeAxis.setLabel(xyzSeriesCollectionChartDefintion.getRangeTitle());
                rangeAxis.setLabelFont(xyzSeriesCollectionChartDefintion.getRangeTitleFont());
                rangeAxis.setLowerBound(xyzSeriesCollectionChartDefintion.getRangeMinimum());
                if (xyzSeriesCollectionChartDefintion.getRangeMinimum() != ValueAxis.DEFAULT_LOWER_BOUND) {
                    rangeAxis.setLowerBound(xyzSeriesCollectionChartDefintion.getRangeMinimum());
                }
                if (xyzSeriesCollectionChartDefintion.getRangeMaximum() != ValueAxis.DEFAULT_UPPER_BOUND) {
                    rangeAxis.setUpperBound(xyzSeriesCollectionChartDefintion.getRangeMaximum());
                }
                if (xyzSeriesCollectionChartDefintion.getRangeTickFormat() != null) {
                    ((NumberAxis) rangeAxis).setNumberFormatOverride(xyzSeriesCollectionChartDefintion.getRangeTickFormat());
                }
                if (xyzSeriesCollectionChartDefintion.getRangeTickFont() != null) {
                    rangeAxis.setTickLabelFont(xyzSeriesCollectionChartDefintion.getRangeTickFont());
                }
            }
        }
    }
}
Also used : DateAxis(org.jfree.chart.axis.DateAxis) NumberAxis(org.jfree.chart.axis.NumberAxis) MeterInterval(org.jfree.chart.plot.MeterInterval) MultiplePiePlot(org.jfree.chart.plot.MultiplePiePlot) StandardPieSectionLabelGenerator(org.jfree.chart.labels.StandardPieSectionLabelGenerator) Range(org.jfree.data.Range) CategoryPlot(org.jfree.chart.plot.CategoryPlot) MeterPlot(org.jfree.chart.plot.MeterPlot) NumberTickUnit(org.jfree.chart.axis.NumberTickUnit) XYPlot(org.jfree.chart.plot.XYPlot) CategoryAxis(org.jfree.chart.axis.CategoryAxis) ValueAxis(org.jfree.chart.axis.ValueAxis) Iterator(java.util.Iterator) PiePlot(org.jfree.chart.plot.PiePlot) MultiplePiePlot(org.jfree.chart.plot.MultiplePiePlot) List(java.util.List) DefaultDrawingSupplier(org.jfree.chart.plot.DefaultDrawingSupplier)

Example 28 with XYPlot

use of org.jfree.chart.plot.XYPlot in project pentaho-platform by pentaho.

the class JFreeChartEngine method createTimeSeriesCollectionChart.

private static JFreeChart createTimeSeriesCollectionChart(final TimeSeriesCollectionChartDefinition chartDefinition) {
    JFreeChart chart = null;
    // TODO Make the following accessible from the chartDefinition
    String domainAxisLabel = null;
    String rangeAxisLabel = null;
    boolean tooltips = true;
    boolean urls = true;
    // -----------------------------------------------------------
    String title = chartDefinition.getTitle();
    boolean legend = chartDefinition.isLegendIncluded();
    DateAxis domainAxis = new DateAxis(domainAxisLabel, TimeZone.getDefault());
    ValueAxis rangeAxis = new NumberAxis(rangeAxisLabel);
    XYItemRenderer renderer = null;
    switch(chartDefinition.getChartType()) {
        case LINE_CHART_TYPE:
            renderer = chartDefinition.isThreeD() ? new XYLine3DRenderer() : new XYLineAndShapeRenderer(true, false);
            ((XYLineAndShapeRenderer) renderer).setShapesVisible(chartDefinition.isMarkersVisible());
            ((XYLineAndShapeRenderer) renderer).setBaseShapesFilled(chartDefinition.isMarkersVisible());
            break;
        case AREA_CHART_TYPE:
            renderer = new XYAreaRenderer();
            break;
        case STEP_CHART_TYPE:
            renderer = new XYStepRenderer();
            break;
        case STEP_AREA_CHART_TYPE:
            renderer = new XYStepAreaRenderer();
            break;
        case DIFFERENCE_CHART_TYPE:
            renderer = new XYDifferenceRenderer();
            break;
        case DOT_CHART_TYPE:
            renderer = new XYDotRenderer();
            ((XYDotRenderer) renderer).setDotHeight(chartDefinition.getDotHeight());
            ((XYDotRenderer) renderer).setDotWidth(chartDefinition.getDotWidth());
            break;
        default:
            // should log an error if invalid chart type passed in - at least return null for no renderer
            return null;
    }
    if (tooltips) {
        XYToolTipGenerator generator = new StandardXYToolTipGenerator(chartDefinition.getTooltipContent(), new SimpleDateFormat(chartDefinition.getTooltipXFormat()), new DecimalFormat(chartDefinition.getTooltipYFormat()));
        renderer.setToolTipGenerator(generator);
    }
    if (urls) {
        renderer.setURLGenerator(new StandardXYURLGenerator());
    }
    renderer.setStroke(JFreeChartEngine.getLineStyleStroke(chartDefinition.getLineStyle(), chartDefinition.getLineWidth()));
    XYPlot plot = new XYPlot(chartDefinition, domainAxis, rangeAxis, renderer);
    JFreeChartEngine.updatePlot(plot, chartDefinition);
    chart = new JFreeChart(title, JFreeChart.DEFAULT_TITLE_FONT, plot, legend);
    return chart;
}
Also used : DateAxis(org.jfree.chart.axis.DateAxis) NumberAxis(org.jfree.chart.axis.NumberAxis) XYLineAndShapeRenderer(org.jfree.chart.renderer.xy.XYLineAndShapeRenderer) DecimalFormat(java.text.DecimalFormat) XYStepAreaRenderer(org.jfree.chart.renderer.xy.XYStepAreaRenderer) XYDotRenderer(org.jfree.chart.renderer.xy.XYDotRenderer) XYDifferenceRenderer(org.jfree.chart.renderer.xy.XYDifferenceRenderer) JFreeChart(org.jfree.chart.JFreeChart) XYAreaRenderer(org.jfree.chart.renderer.xy.XYAreaRenderer) XYLine3DRenderer(org.jfree.chart.renderer.xy.XYLine3DRenderer) StandardXYToolTipGenerator(org.jfree.chart.labels.StandardXYToolTipGenerator) XYPlot(org.jfree.chart.plot.XYPlot) ValueAxis(org.jfree.chart.axis.ValueAxis) XYStepRenderer(org.jfree.chart.renderer.xy.XYStepRenderer) StandardXYURLGenerator(org.jfree.chart.urls.StandardXYURLGenerator) AbstractXYItemRenderer(org.jfree.chart.renderer.xy.AbstractXYItemRenderer) XYItemRenderer(org.jfree.chart.renderer.xy.XYItemRenderer) StandardXYToolTipGenerator(org.jfree.chart.labels.StandardXYToolTipGenerator) XYToolTipGenerator(org.jfree.chart.labels.XYToolTipGenerator) SimpleDateFormat(java.text.SimpleDateFormat)

Example 29 with XYPlot

use of org.jfree.chart.plot.XYPlot in project hmftools by hartwigmedical.

the class CopyNumberCharts method somaticPloidyPDF.

@NotNull
static JFreeChart somaticPloidyPDF(@NotNull final List<PurityAdjustedSomaticVariant> variants) {
    final CategoryTableXYDataset dataset = variants(variants);
    final JFreeChart chart = ChartFactory.createXYBarChart("Somatic Variant Ploidy PDF", "Ploidy", false, "Count", dataset, PlotOrientation.VERTICAL, true, false, false);
    StackedXYBarRenderer renderer = new StackedXYBarRenderer();
    renderer.setBarPainter(new StandardXYBarPainter());
    renderer.setShadowVisible(false);
    XYPlot xyPlot = (XYPlot) chart.getPlot();
    xyPlot.setRenderer(renderer);
    for (int i = 0; i < dataset.getSeriesCount(); i++) {
        renderer.setSeriesPaint(i, copyNumberColor(String.valueOf(dataset.getSeriesKey(i))));
    }
    return chart;
}
Also used : CategoryTableXYDataset(org.jfree.data.xy.CategoryTableXYDataset) XYPlot(org.jfree.chart.plot.XYPlot) StackedXYBarRenderer(org.jfree.chart.renderer.xy.StackedXYBarRenderer) StandardXYBarPainter(org.jfree.chart.renderer.xy.StandardXYBarPainter) JFreeChart(org.jfree.chart.JFreeChart) NotNull(org.jetbrains.annotations.NotNull)

Example 30 with XYPlot

use of org.jfree.chart.plot.XYPlot in project hmftools by hartwigmedical.

the class CopyNumberCharts method minorAllelePDF.

@NotNull
static JFreeChart minorAllelePDF(@NotNull final List<PurpleCopyNumber> variants) {
    final CategoryTableXYDataset dataset = minorAllele(variants);
    final JFreeChart chart = ChartFactory.createXYBarChart("Minor Allele Ploidy PDF", "Ploidy", false, "BAF Count", dataset, PlotOrientation.VERTICAL, true, false, false);
    StackedXYBarRenderer renderer = new StackedXYBarRenderer();
    renderer.setBarPainter(new StandardXYBarPainter());
    renderer.setShadowVisible(false);
    XYPlot xyPlot = (XYPlot) chart.getPlot();
    xyPlot.setRenderer(renderer);
    xyPlot.getDomainAxis().setRange(-1.1, 5.1);
    for (int i = 0; i < dataset.getSeriesCount(); i++) {
        renderer.setSeriesPaint(i, copyNumberColor(String.valueOf(dataset.getSeriesKey(i))));
    }
    return chart;
}
Also used : CategoryTableXYDataset(org.jfree.data.xy.CategoryTableXYDataset) XYPlot(org.jfree.chart.plot.XYPlot) StackedXYBarRenderer(org.jfree.chart.renderer.xy.StackedXYBarRenderer) StandardXYBarPainter(org.jfree.chart.renderer.xy.StandardXYBarPainter) JFreeChart(org.jfree.chart.JFreeChart) NotNull(org.jetbrains.annotations.NotNull)

Aggregations

XYPlot (org.jfree.chart.plot.XYPlot)160 JFreeChart (org.jfree.chart.JFreeChart)98 NumberAxis (org.jfree.chart.axis.NumberAxis)49 Color (java.awt.Color)43 XYLineAndShapeRenderer (org.jfree.chart.renderer.xy.XYLineAndShapeRenderer)35 ValueAxis (org.jfree.chart.axis.ValueAxis)34 DateAxis (org.jfree.chart.axis.DateAxis)33 XYDataset (org.jfree.data.xy.XYDataset)30 SimpleDateFormat (java.text.SimpleDateFormat)22 XYSeries (org.jfree.data.xy.XYSeries)22 TimeSeriesCollection (org.jfree.data.time.TimeSeriesCollection)21 XYSeriesCollection (org.jfree.data.xy.XYSeriesCollection)21 XYItemRenderer (org.jfree.chart.renderer.xy.XYItemRenderer)18 BasicStroke (java.awt.BasicStroke)16 Font (java.awt.Font)16 ChartPanel (org.jfree.chart.ChartPanel)16 StandardXYToolTipGenerator (org.jfree.chart.labels.StandardXYToolTipGenerator)16 DecimalFormat (java.text.DecimalFormat)13 Map (java.util.Map)13 LegendTitle (org.jfree.chart.title.LegendTitle)13