Examples with Variable org.jpl7.Variable used on opensource projects

Example 16 with Variable

use of org.jpl7.Variable in project vcell by virtualcell.

the class NetCDFReader method getExperimentType.

/**
 * Get experiment time.
 * ExpType = 1; This indicates that this NetCDF file is a 'Single model' file.
 * ExpType = 2; This indicates that this NetCDF file is a 'Multi-model' file.
 * @return int, experiment type.
 */
public int getExperimentType() throws IOException {
    Variable v = ncfile.findVariable("ExpType");
    int val = 0;
    try {
        val = v.readScalarInt();
    } catch (IOException ioe) {
        ioe.printStackTrace(System.err);
        throw new IOException("Cannot get proper experiment type from the model.");
    }
    return val;
}

Example 17 with Variable

use of org.jpl7.Variable in project vcell by virtualcell.

the class NetCDFReader method getEndTime.

/**
 * Get ending time. 0 dimenstion
 * @return double, ending time.
 */
public double getEndTime() throws IOException {
    Variable v = ncfile.findVariable("TEnd");
    Double val = 0.0;
    try {
        val = v.readScalarDouble();
    } catch (IOException ioe) {
        ioe.printStackTrace(System.err);
        throw new IOException("Cannot get proper ending time from the model.");
    }
    return val;
}

Example 18 with Variable

use of org.jpl7.Variable in project vcell by virtualcell.

the class NetCDFReader method getCellGrowthTimeSD.

/**
 * Get cell growth time SD, which is the standard deviation of the time between cell divisions.
 * @return double, standard deviation of cell growth time.
 */
public double getCellGrowthTimeSD() throws IOException {
    Variable v = ncfile.findVariable("CellGrowthTimeSD");
    Double val = 0.0;
    try {
        val = v.readScalarDouble();
    } catch (IOException ioe) {
        ioe.printStackTrace(System.err);
        throw new IOException("Cannot get proper standard deviation of the time between cell divisions from the model.");
    }
    return val;
}

Example 19 with Variable

use of org.jpl7.Variable in project vcell by virtualcell.

the class NetCDFReader method getNumModels_Variable.

/**
 * Get Number of Models.
 * @return int. number of models.
 */
public int getNumModels_Variable() throws IOException {
    Variable v = ncfile.findVariable("NumModels");
    int val = 0;
    try {
        val = v.readScalarInt();
    } catch (IOException ioe) {
        ioe.printStackTrace(System.err);
        throw new IOException("Cannot get proper variable of number of models from the file.");
    }
    return val;
}

Example 20 with Variable

use of org.jpl7.Variable in project vcell by virtualcell.

the class NetCDFReader method getCellGrowthTime.

/**
 * Get cell growth time, which is the average amount of time between cell divisions.
 * @return double, cell growth time.
 */
public double getCellGrowthTime() throws IOException {
    Variable v = ncfile.findVariable("CellGrowthTime");
    Double val = 0.0;
    try {
        val = v.readScalarDouble();
    } catch (IOException ioe) {
        ioe.printStackTrace(System.err);
        throw new IOException("Cannot get proper cell growth time from the model.");
    }
    return val;
}