Examples with JsonObject org.json.simple.JsonObject used on opensource projects

Example 86 with JsonObject

use of org.json.simple.JsonObject in project spatial-portal by AtlasOfLivingAustralia.

the class GazetteerAutoComplete method refresh.

/**
     * Refresh comboitem based on the specified value.
     */
private void refresh(String val) {
    String searchString = val.trim().replaceAll("\\s+", "+");
    searchString = (searchString.isEmpty()) ? "a" : searchString;
    try {
        HttpClient client = new HttpClient();
        GetMethod get = new GetMethod(CommonData.getLayersServer() + "/search?limit=40&q=" + searchString + "&userObjects=false");
        get.addRequestHeader(StringConstants.ACCEPT, StringConstants.JSON_JAVASCRIPT_ALL);
        client.executeMethod(get);
        String slist = get.getResponseBodyAsString();
        JSONParser jp = new JSONParser();
        JSONArray ja = (JSONArray) jp.parse(slist);
        if (ja == null) {
            return;
        }
        Iterator it = getItems().iterator();
        for (int i = 0; i < ja.size(); i++) {
            JSONObject jo = (JSONObject) ja.get(i);
            String itemString = jo.get(StringConstants.NAME).toString();
            String description = (jo.containsKey(StringConstants.DESCRIPTION) ? jo.get(StringConstants.DESCRIPTION).toString() : "") + " (" + jo.get("fieldname") + ")";
            if (it != null && it.hasNext()) {
                Comboitem ci = (Comboitem) it.next();
                ci.setLabel(itemString);
                ci.setValue(jo);
                ci.setDescription(description);
            } else {
                it = null;
                Comboitem ci = new Comboitem();
                ci.setLabel(itemString);
                ci.setValue(jo);
                ci.setDescription(description);
                ci.setParent(this);
            }
        }
        while (it != null && it.hasNext()) {
            it.next();
            it.remove();
        }
    } catch (Exception e) {
        LOGGER.error("error selecting gaz autocomplete item", e);
    }
}

Example 87 with JsonObject

use of org.json.simple.JsonObject in project spatial-portal by AtlasOfLivingAustralia.

the class GazetteerPointSearch method pointSearch.

/**
     * *
     * Given a lon,lat and layer - queries the gaz for a polygon
     *
     * @param lon   longitude
     * @param lat   latitude
     * @param layer geoserver layer to search
     * @return returns a link to a geojson feature in the gaz
     */
public static Map<String, String> pointSearch(String lon, String lat, String layer, String geoserver) {
    try {
        String uri = CommonData.getLayersServer() + "/intersect/" + layer + "/" + lat + "/" + lon;
        HttpClient client = new HttpClient();
        GetMethod get = new GetMethod(uri);
        get.addRequestHeader(StringConstants.ACCEPT, StringConstants.JSON_JAVASCRIPT_ALL);
        int result = client.executeMethod(get);
        String slist = get.getResponseBodyAsString();
        LOGGER.debug("URI: " + uri);
        LOGGER.debug("result: " + result);
        LOGGER.debug("slist: " + slist);
        JSONParser jp = new JSONParser();
        JSONArray ja = (JSONArray) jp.parse(slist);
        if (ja != null && !ja.isEmpty()) {
            JSONObject jo = (JSONObject) ja.get(0);
            Map<String, String> map = new HashMap<String, String>();
            for (Object k : jo.keySet()) {
                map.put((String) k, jo.get((String) k) == null ? "" : jo.get((String) k).toString());
            }
            return map;
        }
    } catch (Exception e1) {
        LOGGER.error("error with gaz point search", e1);
    }
    return null;
}

Example 88 with JsonObject

use of org.json.simple.JsonObject in project spatial-portal by AtlasOfLivingAustralia.

the class ImportAnalysisController method afterCompose.

@Override
public void afterCompose() {
    super.afterCompose();
    try {
        JSONObject jo = remoteLogger.getLogCSV();
        if (jo != null && jo.containsKey("abe") && !((JSONArray) jo.get("abe")).isEmpty()) {
            List<String[]> logEntries = new ArrayList<String[]>();
            for (Object o : (JSONArray) jo.get("abe")) {
                JSONObject j = (JSONObject) o;
                String[] r = new String[5];
                r[0] = j.containsKey(StringConstants.ID) ? j.get(StringConstants.ID).toString() : "";
                r[1] = j.containsKey("category2") ? j.get("category2").toString() : "";
                r[2] = j.containsKey("time") ? new SimpleDateFormat("dd/MM/yyyy hh:mm:ss").format(new Date(Long.parseLong(j.get("time").toString()))) : "";
                r[3] = "";
                r[4] = j.containsKey("service") && ((JSONObject) j.get("service")).containsKey("processid") ? ((JSONObject) j.get("service")).get("processid").toString() : "";
                if (r[4].length() > 0 && !"-1".equals(r[4]) && (StringConstants.CLASSIFICATION.equalsIgnoreCase(r[1]) || StringConstants.GDM.equalsIgnoreCase(r[1]) || StringConstants.PREDICTION.equalsIgnoreCase(r[1]) || StringConstants.SPECIES_TO_GRID.equalsIgnoreCase(r[1]))) {
                    try {
                        r[3] = StringConstants.TRUE;
                        refNum.setValue(r[4]);
                        pid = r[4];
                        if (!getJobStatus().contains(StringConstants.JOB_DOES_NOT_EXIST)) {
                            //not sure why, but sometimes data is missing even when the job exists
                            if (hasValidMetadata(r)) {
                                logEntries.add(r);
                            }
                        } else {
                            // older jobs don't exist, stop checking
                            break;
                        }
                    } catch (Exception e) {
                        r[4] = "unavailable";
                        r[3] = StringConstants.FALSE;
                    }
                }
            }
            if (!logEntries.isEmpty()) {
                divPriorAnalysis.setVisible(true);
                lbLog.setModel(new SimpleListModel(logEntries));
                setRenderer();
            }
        }
    } catch (Exception e) {
        LOGGER.error("getting log did not work", e);
    }
    refNum.setValue("");
}

Example 89 with JsonObject

use of org.json.simple.JsonObject in project spatial-portal by AtlasOfLivingAustralia.

the class ScatterplotListComposer method onFinish.

@Override
public boolean onFinish() {
    LOGGER.debug("Area: " + getSelectedArea());
    LOGGER.debug("Species: " + getSelectedSpecies());
    Query lsid = getSelectedSpecies();
    if (lsid == null) {
        getMapComposer().showMessage("There was a problem selecting the species.  Try to select the species again", this);
        return false;
    }
    lsid = lsid.newFacet(new Facet("occurrence_status_s", "absent", false), false);
    SelectedArea filterSa = getSelectedArea();
    SelectedArea highlightSa = getSelectedAreaHighlight();
    Query lsidQuery = QueryUtil.queryFromSelectedArea(lsid, filterSa, false, getGeospatialKosher());
    if (lsidQuery == null || lsidQuery.getOccurrenceCount() == 0) {
        getMapComposer().showMessage("No occurrences found for the selected species in the selected area.");
        return false;
    }
    String pid = "";
    Query backgroundLsid = getSelectedSpeciesBk();
    backgroundLsid = backgroundLsid.newFacet(new Facet("occurrence_status_s", "absent", false), false);
    if (bgSearchSpeciesACComp.hasValidAnnotatedItemSelected()) {
        backgroundLsid = bgSearchSpeciesACComp.getQuery((Map) getMapComposer().getSession().getAttribute(StringConstants.USERPOINTS), false, getGeospatialKosher());
    }
    boolean envGrid = chkShowEnvIntersection.isChecked();
    Query backgroundLsidQuery = null;
    if (backgroundLsid != null) {
        backgroundLsidQuery = QueryUtil.queryFromSelectedArea(backgroundLsid, filterSa, false, getGeospatialKosherBk());
    }
    String sbenvsel = getSelectedLayersWithDisplayNames();
    String[] layers = sbenvsel.split(":");
    if (layers.length > 20) {
        getMapComposer().showMessage(sbenvsel.split(":").length + " layers selected.  Please select fewer than 20 environmental layers in step 1.");
        return false;
    }
    StringBuilder layernames = new StringBuilder();
    String layerunits = "";
    for (int i = 0; i < layers.length; i++) {
        String[] split = layers[i].split("\\|");
        if (layernames.length() > 0) {
            layernames.append(",");
            layerunits += ",";
        }
        layers[i] = split[0];
        String layerDisplayName = split[1];
        layernames.append("\"").append(layerDisplayName.replace("\"", "\"\"").replace("\\", "\\\\")).append("\"");
        String units = "";
        try {
            units = String.valueOf(((JSONObject) CommonData.getLayer(layers[i]).get("layer")).get("environmentalvalueunits"));
        } catch (Exception e) {
        }
        layerunits += units;
    }
    try {
        HttpClient client = new HttpClient();
        PostMethod post = new PostMethod(CommonData.getSatServer() + "/ws/scatterplotlist");
        //add data parameters
        post.addParameter("layers", getSelectedLayers());
        post.addParameter("layernames", layernames.toString());
        post.addParameter("layerunits", layerunits);
        post.addParameter("foregroundOccurrencesQs", lsidQuery.getQ());
        post.addParameter("foregroundOccurrencesBs", lsidQuery.getBS());
        post.addParameter("foregroundName", lsidQuery.getName());
        if (backgroundLsidQuery != null) {
            post.addParameter("backgroundOccurrencesQs", backgroundLsidQuery.getQ());
            post.addParameter("backgroundOccurrencesBs", backgroundLsidQuery.getBS());
            post.addParameter("backgroundName", backgroundLsidQuery.getName());
        }
        if (envGrid) {
            post.addParameter("gridDivisions", "20");
        }
        if (filterSa != null) {
            post.addParameter("filterWkt", filterSa.getWkt());
        }
        //add style parameters (highlight area)
        if (highlightSa != null) {
            post.addParameter(StringConstants.HIGHLIGHT_WKT, highlightSa.getWkt());
        }
        post.addRequestHeader(StringConstants.ACCEPT, StringConstants.APPLICATION_JSON);
        client.executeMethod(post);
        String hasId = post.getResponseBodyAsString();
        JSONParser jp = new JSONParser();
        JSONObject jo = (JSONObject) jp.parse(hasId);
        String htmlUrl = null;
        String downloadUrl = null;
        if (jo.containsKey(StringConstants.ID)) {
            pid = jo.get(StringConstants.ID).toString();
        }
        if (jo.containsKey("htmlUrl")) {
            htmlUrl = jo.get("htmlUrl").toString();
        }
        if (jo.containsKey("downloadUrl")) {
            downloadUrl = jo.get("downloadUrl").toString();
        }
        if (htmlUrl != null && downloadUrl != null) {
            Events.echoEvent(StringConstants.OPEN_URL, getMapComposer(), htmlUrl);
            try {
                Filedownload.save(new URL(downloadUrl).openStream(), "application/zip", tToolName.getValue().replaceAll(" ", "_") + ".zip");
            } catch (Exception e) {
                LOGGER.error("error preparing download for scatterplot data", e);
            }
            try {
                String extras = "";
                if (highlightSa != null) {
                    extras += "highlight=" + highlightSa.getWkt();
                }
                if (backgroundLsid instanceof BiocacheQuery) {
                    extras += "background=" + ((BiocacheQuery) backgroundLsid).getLsids();
                } else if (backgroundLsid instanceof UserDataQuery) {
                    extras += "background=" + backgroundLsid.getQ();
                } else {
                    extras += "background=none";
                }
                if (lsidQuery instanceof BiocacheQuery) {
                    BiocacheQuery bq = (BiocacheQuery) lsidQuery;
                    extras = bq.getWS() + "|" + bq.getBS() + "|" + bq.getFullQ(false) + "|" + extras;
                    remoteLogger.logMapAnalysis(tToolName.getValue(), "Tool - Scatterplot List", filterSa.getWkt(), bq.getLsids(), sbenvsel, pid, extras, StringConstants.SUCCESSFUL);
                } else if (lsidQuery instanceof UserDataQuery) {
                    remoteLogger.logMapAnalysis(tToolName.getValue(), "Tool - Scatterplot List", filterSa.getWkt(), lsidQuery.getQ(), sbenvsel, pid, extras, StringConstants.SUCCESSFUL);
                } else {
                    remoteLogger.logMapAnalysis(tToolName.getValue(), "Tool - Scatterplot List", filterSa.getWkt(), "", sbenvsel, pid, extras, StringConstants.SUCCESSFUL);
                }
            } catch (Exception e) {
                LOGGER.error("failed to produce a scatterplot list.", e);
            }
        } else {
            LOGGER.error("failed to produce a scatterplot list.  response: " + jo);
        }
    } catch (Exception e) {
        LOGGER.error("error getting a new scatterplot id", e);
    }
    this.detach();
    return true;
}

Example 90 with JsonObject

use of org.json.simple.JsonObject in project spatial-portal by AtlasOfLivingAustralia.

the class ToolComposer method processAdhoc.

JSONObject processAdhoc(String scientificName) {
    String url = CommonData.getBiocacheServer() + "/process/adhoc";
    try {
        HttpClient client = new HttpClient();
        PostMethod post = new PostMethod(url);
        StringRequestEntity sre = new StringRequestEntity("{ \"scientificName\": \"" + scientificName.replace("\"", "'") + "\" } ", StringConstants.APPLICATION_JSON, StringConstants.UTF_8);
        post.setRequestEntity(sre);
        int result = client.executeMethod(post);
        if (result == 200) {
            JSONParser jp = new JSONParser();
            return (JSONObject) jp.parse(post.getResponseBodyAsString());
        }
    } catch (Exception e) {
        LOGGER.error("error processing species request: " + url + ", scientificName=" + scientificName, e);
    }
    return null;
}