Examples with Code org.mitre.synthea.world.concepts.HealthRecord.Code used on opensource projects

Example 26 with Code

use of org.mitre.synthea.world.concepts.HealthRecord.Code in project synthea by synthetichealth.

the class CSVExporter method medication.

/**
 * Write a single Medication to medications.csv.
 *
 * @param personID    ID of the person prescribed the medication.
 * @param encounterID ID of the encounter where the medication was prescribed
 * @param payerID     ID of the payer who covered the immunization.
 * @param medication  The medication itself
 * @param stopTime    End time
 * @throws IOException if any IO error occurs
 */
private void medication(String personID, String encounterID, String payerID, Medication medication, long stopTime) throws IOException {
    // START,STOP,PATIENT,PAYER,ENCOUNTER,CODE,DESCRIPTION,
    // BASE_COST,PAYER_COVERAGE,DISPENSES,TOTALCOST,REASONCODE,REASONDESCRIPTION
    StringBuilder s = new StringBuilder();
    s.append(iso8601Timestamp(medication.start)).append(',');
    if (medication.stop != 0L) {
        s.append(iso8601Timestamp(medication.stop));
    }
    s.append(',');
    s.append(personID).append(',');
    s.append(payerID).append(',');
    s.append(encounterID).append(',');
    // CODE
    Code coding = medication.codes.get(0);
    s.append(coding.code).append(',');
    // DESCRIPTION
    s.append(clean(coding.display)).append(',');
    // BASE_COST
    BigDecimal cost = medication.getCost();
    s.append(String.format(Locale.US, "%.2f", cost)).append(',');
    // PAYER_COVERAGE
    s.append(String.format(Locale.US, "%.2f", medication.claim.getCoveredCost())).append(',');
    // dispenses = refills + original
    long dispenses = 1;
    // makes the math cleaner and more explicit. dispenses * unit cost = total cost
    long stop = medication.stop;
    if (stop == 0L) {
        stop = stopTime;
    }
    long medDuration = stop - medication.start;
    if (medication.prescriptionDetails != null && medication.prescriptionDetails.has("refills")) {
        dispenses = medication.prescriptionDetails.get("refills").getAsInt();
    } else if (medication.prescriptionDetails != null && medication.prescriptionDetails.has("duration")) {
        JsonObject duration = medication.prescriptionDetails.getAsJsonObject("duration");
        long quantity = duration.get("quantity").getAsLong();
        String unit = duration.get("unit").getAsString();
        long durationMs = Utilities.convertTime(unit, quantity);
        dispenses = medDuration / durationMs;
    } else {
        // assume 1 refill / month
        long durationMs = Utilities.convertTime("months", 1);
        dispenses = medDuration / durationMs;
    }
    if (dispenses < 1) {
        // integer division could leave us with 0,
        // ex. if the active time (start->stop) is less than the provided duration
        // or less than a month if no duration provided
        dispenses = 1;
    }
    s.append(dispenses).append(',');
    BigDecimal totalCost = cost.multiply(BigDecimal.valueOf(dispenses)).setScale(2, // Truncate 2 decimal places
    RoundingMode.DOWN);
    s.append(String.format(Locale.US, "%.2f", totalCost)).append(',');
    if (medication.reasons.isEmpty()) {
        // reason code & desc
        s.append(',');
    } else {
        Code reason = medication.reasons.get(0);
        s.append(reason.code).append(',');
        s.append(clean(reason.display));
    }
    s.append(NEWLINE);
    write(s.toString(), medications);
}

Example 27 with Code

use of org.mitre.synthea.world.concepts.HealthRecord.Code in project synthea by synthetichealth.

the class CSVExporter method allergy.

/**
 * Write a single Allergy to allergies.csv.
 *
 * @param personID    ID of the person that has the allergy.
 * @param encounterID ID of the encounter where the allergy was diagnosed
 * @param allergy     The allergy itself
 * @throws IOException if any IO error occurs
 */
private void allergy(String personID, String encounterID, HealthRecord.Allergy allergy) throws IOException {
    // START,STOP,PATIENT,ENCOUNTER,CODE,SYSTEM,DESCRIPTION,TYPE,CATEGORY
    // REACTION1,DESCRIPTION1,SEVERITY1,
    // REACTION2,DESCRIPTION2,SEVERITY2
    StringBuilder s = new StringBuilder();
    s.append(dateFromTimestamp(allergy.start)).append(',');
    if (allergy.stop != 0L) {
        s.append(dateFromTimestamp(allergy.stop));
    }
    s.append(',');
    s.append(personID).append(',');
    s.append(encounterID).append(',');
    Code coding = allergy.codes.get(0);
    s.append(coding.code).append(',');
    s.append(getSystemFromURI(coding.system)).append(',');
    s.append(clean(coding.display)).append(',');
    if (allergy.allergyType != null) {
        s.append(allergy.allergyType);
    }
    s.append(',');
    if (allergy.category != null) {
        s.append(allergy.category);
    }
    s.append(',');
    int reactionsSize = 0;
    if (allergy.reactions != null) {
        reactionsSize = allergy.reactions.size();
    }
    Function<Map.Entry<HealthRecord.Code, HealthRecord.ReactionSeverity>, String> template = mapEntry -> {
        StringBuilder reactionBuilder = new StringBuilder();
        reactionBuilder.append(mapEntry.getKey().code).append(',');
        reactionBuilder.append(clean(mapEntry.getKey().display)).append(',');
        reactionBuilder.append(mapEntry.getValue());
        return reactionBuilder.toString();
    };
    switch(reactionsSize) {
        case 0:
            s.append(",,,,,");
            break;
        case 1:
            s.append(allergy.reactions.entrySet().stream().map(template).collect(Collectors.joining()));
            s.append(",,,");
            break;
        default:
            // case where there are more than two reactions so we need to support by severity
            s.append(allergy.reactions.entrySet().stream().sorted(Comparator.comparing(Map.Entry::getValue)).limit(2).map(template).collect(Collectors.joining(",")));
    }
    s.append(NEWLINE);
    write(s.toString(), allergies);
}

Example 28 with Code

use of org.mitre.synthea.world.concepts.HealthRecord.Code in project synthea by synthetichealth.

the class CSVExporter method supply.

/**
 * Write a single Supply to supplies.csv.
 *
 * @param personID     ID of the person the supply was used for.
 * @param encounterID  ID of the encounter where the supply was used
 * @param supply       The supply itself
 * @throws IOException if any IO error occurs
 */
private void supply(String personID, String encounterID, Encounter encounter, Supply supply) throws IOException {
    // DATE,PATIENT,ENCOUNTER,CODE,DESCRIPTION,QUANTITY
    StringBuilder s = new StringBuilder();
    s.append(dateFromTimestamp(supply.start)).append(',');
    s.append(personID).append(',');
    s.append(encounterID).append(',');
    Code code = supply.codes.get(0);
    s.append(code.code).append(',');
    s.append(clean(code.display)).append(',');
    s.append(supply.quantity);
    s.append(NEWLINE);
    write(s.toString(), supplies);
}

Example 29 with Code

use of org.mitre.synthea.world.concepts.HealthRecord.Code in project synthea by synthetichealth.

the class CPCDSExporter method claim.

/**
 * Method to write a single Claims file. Take an encounter in the parameters and
 * processes Diagnoses, Procedures, and Pharmacy claims for each one, in order.
 *
 * @param rand            Source of randomness to use when generating ids etc
 * @param encounter       The encounter object itself
 * @param personID        The Id of the involved patient
 * @param encounterID     The Id of the encounter
 * @param medRecordNumber The patients Medical Record Number
 * @param attributes      Calculated attributes for the entire encounter
 * @param payerId         The Id of the payer
 * @throws IOException Throws this exception
 */
private void claim(RandomNumberGenerator rand, Encounter encounter, String personID, String encounterID, UUID medRecordNumber, CPCDSAttributes attributes, String payerId, String coverageID) throws IOException {
    StringBuilder s = new StringBuilder();
    int i = 1;
    while (i <= attributes.getLength()) {
        // admin
        String billType = attributes.getBillTypeCode();
        String[] adminSection = { String.valueOf(dateFromTimestamp(encounter.start)), String.valueOf(dateFromTimestamp(encounter.stop)), String.valueOf(dateFromTimestamp(encounter.stop)), String.valueOf(dateFromTimestamp(encounter.start)), String.valueOf(dateFromTimestamp(encounter.start)), String.valueOf(dateFromTimestamp(encounter.stop)), personID.toString(), medRecordNumber.toString(), encounterID, "", "", "", attributes.getSourceAdminCode(), attributes.getAdmissionTypeCode(), Character.toString(billType.charAt(0)), Character.toString(billType.charAt(1)), Character.toString(billType.charAt(2)), attributes.getProcStatus(), attributes.getClaimType(), attributes.getDischarge(), attributes.getDenialCode(), coverageID, attributes.getPayeeType(), personID, attributes.getPaymentType(), coverageID };
        StringBuilder admin = new StringBuilder();
        for (String item : adminSection) {
            admin.append(item).append(',');
        }
        String adminString = admin.toString();
        // provider
        practitioner(encounter.clinician.attributes.get("specialty").toString(), attributes.getNpiProvider(), attributes.getServiceSiteNPI(), encounter.clinician.getFullname());
        String[] providerSection = { attributes.getNpiProvider(), attributes.getNetworkStatus(), attributes.getNpiProvider(), attributes.getNetworkStatus(), attributes.getServiceSiteNPI(), attributes.getNetworkStatus(), attributes.getNpiProvider(), attributes.getNetworkStatus(), attributes.getNpiProvider(), attributes.getNetworkStatus(), attributes.getNpiPrescribingProvider(), attributes.getNetworkStatus(), attributes.getNpiProvider() };
        StringBuilder provider = new StringBuilder();
        for (String item : providerSection) {
            provider.append(item).append(',');
        }
        String providerString = provider.toString();
        // totals
        // encounter.claim.getTotalClaimCost();
        double totalCost = attributes.getTotalClaimCost();
        double coveredCost = encounter.claim.getCoveredCost();
        double disallowed = totalCost - coveredCost;
        double patientPaid;
        double memberReimbursement;
        double paymentAmount;
        double toProvider;
        double deductible = encounter.claim.person.coverage.getTotalCoverage();
        double liability;
        double copay = 0.00;
        if (disallowed > 0) {
            memberReimbursement = 0.00;
            patientPaid = disallowed;
        } else {
            memberReimbursement = disallowed - 2 * disallowed;
            disallowed = 0.00;
            patientPaid = 0.00;
        }
        paymentAmount = coveredCost + patientPaid;
        toProvider = paymentAmount;
        liability = totalCost - paymentAmount;
        String[] claimTotalsSection = { String.valueOf(paymentAmount), String.valueOf(totalCost), String.valueOf(patientPaid), String.valueOf(toProvider), String.valueOf(memberReimbursement), String.valueOf(paymentAmount), String.valueOf(disallowed), String.valueOf(deductible), String.valueOf(""), String.valueOf(copay), String.valueOf(liability), String.valueOf(coveredCost), String.valueOf(0.00) };
        StringBuilder totals = new StringBuilder();
        for (String item : claimTotalsSection) {
            totals.append(item).append(',');
        }
        String totalsString = totals.toString();
        String pharmacyEMPTY = ",,,,,,," + attributes.getResidence() + ",";
        String procedureEMPTY = ",,,,,,,,";
        // diagnosis
        for (Entry condition : encounter.conditions) {
            StringBuilder cond = new StringBuilder();
            String presentOnAdmission;
            String[] poaCodes = { "Y", "N", "U", "W" };
            presentOnAdmission = poaCodes[(int) randomLongWithBounds(0, 3)];
            cond.append(adminString);
            cond.append(pharmacyEMPTY);
            cond.append(providerString);
            cond.append(totalsString);
            cond.append(dateFromTimestamp(condition.start)).append(',');
            cond.append(i).append(',');
            cond.append(dateFromTimestamp(condition.stop)).append(',');
            cond.append("").append(',');
            cond.append(attributes.getPlaceOfService()).append(',');
            cond.append(attributes.getRevenueCenterCode()).append(',');
            cond.append("").append(',');
            cond.append("").append(',');
            cond.append("").append(',');
            cond.append("").append(',');
            cond.append("").append(',');
            cond.append("").append(',');
            cond.append(attributes.getBenefitPaymentStatus()).append(',');
            cond.append(attributes.getDenialCode()).append(',');
            BigDecimal cost = condition.getCost();
            cond.append(0.00).append(',');
            cond.append(0.00).append(',');
            cond.append(0.00).append(',');
            cond.append("").append(',');
            cond.append(cost).append(',');
            cond.append(cost).append(',');
            cond.append(encounter.claim.person.coverage.getTotalCoverage()).append(',');
            cond.append(cost).append(',');
            cond.append(0.00).append(',');
            cond.append(cost).append(',');
            cond.append(cost).append(',');
            cond.append(0.00).append(',');
            cond.append(0.00).append(',');
            cond.append(0.00).append(',');
            Code coding = condition.codes.get(0);
            String diagnosisCode = "SNOMED";
            String diagnosisType = "principal";
            cond.append(coding.code).append(',');
            cond.append(clean(coding.display)).append(',');
            cond.append(presentOnAdmission).append(',');
            cond.append(diagnosisCode).append(',');
            cond.append(diagnosisType).append(',');
            cond.append("").append(',');
            cond.append(procedureEMPTY).append(NEWLINE);
            s.append(cond.toString());
            i++;
        }
        // procedures
        int k = 0;
        for (Procedure procedure : encounter.procedures) {
            String presentOnAdmission;
            String diagnosisCode = "SNOMED";
            String diagnosisType = "principal";
            String procedureType;
            if (k == 0) {
                procedureType = "primary";
            } else {
                procedureType = "secondary";
            }
            String[] poaCodes = { "Y", "N", "U", "W" };
            presentOnAdmission = poaCodes[(int) randomLongWithBounds(0, 3)];
            StringBuilder proc = new StringBuilder();
            proc.append(adminString);
            proc.append(",").append(",").append(",").append(",").append(",").append(",");
            proc.append("01,").append(attributes.getResidence()).append(',');
            proc.append(providerString);
            proc.append(totalsString);
            String typeOfService = "01";
            if (attributes.getNetworkStatus().equals("out")) {
                typeOfService = "11";
            }
            proc.append(dateFromTimestamp(procedure.start)).append(',');
            proc.append(i).append(',');
            proc.append(dateFromTimestamp(procedure.stop)).append(',');
            proc.append(typeOfService).append(',');
            proc.append(attributes.getPlaceOfService()).append(',');
            proc.append(attributes.getRevenueCenterCode()).append(',');
            proc.append("").append(',');
            proc.append("").append(',');
            proc.append("").append(',');
            proc.append("").append(',');
            proc.append("").append(',');
            proc.append("").append(',');
            proc.append(attributes.getBenefitPaymentStatus()).append(',');
            proc.append(attributes.getDenialCode()).append(',');
            BigDecimal cost = procedure.getCost();
            proc.append(0.00).append(',');
            proc.append(0.00).append(',');
            proc.append(0.00).append(',');
            proc.append("").append(',');
            proc.append(cost).append(',');
            proc.append(cost).append(',');
            proc.append(encounter.claim.person.coverage.getTotalCoverage()).append(',');
            proc.append(cost).append(',');
            proc.append(0.00).append(',');
            proc.append(cost).append(',');
            proc.append(cost).append(',');
            proc.append(0.00).append(',');
            proc.append(0.00).append(',');
            proc.append(0.00).append(',');
            if (procedure.reasons.size() != 0) {
                Code reasons = procedure.reasons.get(0);
                proc.append(reasons.code).append(',');
                proc.append(clean(reasons.display)).append(',');
                proc.append(presentOnAdmission).append(',');
                proc.append(diagnosisCode).append(',');
                proc.append(diagnosisType).append(',');
            } else {
                proc.append("").append(',');
                proc.append("").append(',');
                proc.append("").append(',');
                proc.append("").append(',');
                proc.append("").append(',');
            }
            proc.append("").append(',');
            Code procedureCode = procedure.codes.get(0);
            proc.append(procedureCode.code).append(',');
            proc.append(clean(procedureCode.display)).append(',');
            proc.append(dateFromTimestamp(procedure.start)).append(',');
            proc.append(diagnosisCode).append(',');
            proc.append(procedureType).append(',');
            proc.append("").append(',');
            proc.append("").append(',');
            proc.append("").append(',');
            proc.append("").append(NEWLINE);
            s.append(proc.toString());
            i++;
        }
        // pharmacy
        for (Medication medication : encounter.medications) {
            StringBuilder med = new StringBuilder();
            String presentOnAdmission;
            String diagnosisCode = "SNOMED";
            String diagnosisType = "principal";
            String[] poaCodes = { "Y", "N", "U", "W" };
            presentOnAdmission = poaCodes[(int) randomLongWithBounds(0, 3)];
            String[] brandGenericList = { "b", "g" };
            String brandGenericCode = brandGenericList[(int) randomLongWithBounds(0, 1)];
            String[] dawCodeList = { "1", "2", "3", "4", "7", "1", "3", "5", "8" };
            String dawCode;
            if (brandGenericCode.equals("b")) {
                dawCode = dawCodeList[(int) randomLongWithBounds(0, 4)];
            } else {
                if (brandGenericCode.equals("g")) {
                    dawCode = dawCodeList[(int) randomLongWithBounds(5, 8)];
                } else {
                    dawCode = "0";
                }
            }
            /*
         * {"dosage": {"amount":1,"frequency":2,"period":1,"unit":"days"},
         * "duration":{"quantity":2,"unit":"weeks"}, "instructions":[ {
         * "system":"SNOMED-CT", "code":"code", "display":"display string"} ] }
         */
            JsonObject medicationDetails = medication.prescriptionDetails;
            Dictionary<String, Integer> dayMultiplier = new Hashtable<String, Integer>();
            dayMultiplier.put("hours", 1);
            dayMultiplier.put("days", 1);
            dayMultiplier.put("weeks", 2);
            dayMultiplier.put("months", 30);
            dayMultiplier.put("years", 365);
            int dailyDosage;
            int daysSupply;
            JsonObject dosage;
            JsonObject duration;
            if (medicationDetails == null || medicationDetails.has("as_needed")) {
                dailyDosage = 0;
                daysSupply = 0;
            } else {
                if (medicationDetails != null && medicationDetails.has("dosage")) {
                    dosage = medicationDetails.get("dosage").getAsJsonObject();
                    if (dosage.has("amount") == false) {
                        dosage.addProperty("amount", 0);
                    }
                    if (dosage.has("frequency") == false) {
                        dosage.addProperty("frequency", 0);
                    }
                    if (dosage.has("period") == false) {
                        dosage.addProperty("period", 0);
                    }
                    if (dosage.has("unit") == false) {
                        dosage.addProperty("unit", "days");
                    }
                } else {
                    dosage = new JsonObject();
                    dosage.addProperty("amount", 0);
                    dosage.addProperty("frequency", 0);
                    dosage.addProperty("period", 0);
                    dosage.addProperty("unit", "days");
                }
                if (medicationDetails != null && medicationDetails.has("duration")) {
                    duration = medicationDetails.get("duration").getAsJsonObject();
                    if (duration.has("quantity") == false) {
                        duration.addProperty("quantity", 0);
                    }
                    if (duration.has("unit") == false) {
                        duration.addProperty("unit", "days");
                    }
                } else {
                    duration = new JsonObject();
                    duration.addProperty("quantity", 0);
                    duration.addProperty("unit", "days");
                }
                dailyDosage = dosage.get("amount").getAsInt() * dosage.get("frequency").getAsInt() * dosage.get("period").getAsInt() * (int) dayMultiplier.get(dosage.get("unit").getAsString());
                daysSupply = duration.get("quantity").getAsInt() * dayMultiplier.get(duration.get("unit").getAsString());
            }
            UUID rxRef = rand.randUUID();
            String[] serviceTypeList = { "01", "04", "06" };
            String serviceType = serviceTypeList[(int) randomLongWithBounds(0, 2)];
            med.append(adminString);
            med.append(daysSupply).append(',');
            med.append(rxRef).append(',');
            med.append(dawCode).append(',');
            med.append("0").append(',');
            med.append("0").append(',');
            med.append(brandGenericCode).append(',');
            med.append(serviceType).append(',');
            med.append(attributes.getResidence()).append(',');
            med.append(providerString);
            med.append(totalsString);
            Code coding = medication.codes.get(0);
            med.append(dateFromTimestamp(medication.start)).append(',');
            med.append(i).append(',');
            med.append(dateFromTimestamp(medication.stop)).append(',');
            med.append("16").append(',');
            med.append("01").append(',');
            med.append(attributes.getRevenueCenterCode()).append(',');
            med.append(dailyDosage * daysSupply).append(',');
            med.append(dailyDosage * daysSupply).append(',');
            med.append(coding.code).append(',');
            med.append(randomLongWithBounds(0, 2)).append(',');
            med.append(dailyDosage * daysSupply).append(',');
            med.append("UN").append(',');
            med.append(attributes.getBenefitPaymentStatus()).append(',');
            med.append(attributes.getDenialCode()).append(',');
            BigDecimal cost = medication.getCost();
            med.append(0.00).append(',');
            med.append(0.00).append(',');
            med.append(0.00).append(',');
            med.append((dailyDosage == 0 || daysSupply == 0 ? 0 : cost.longValue() / (dailyDosage * daysSupply))).append(',');
            med.append(cost).append(',');
            med.append(cost).append(',');
            med.append(encounter.claim.person.coverage.getTotalCoverage()).append(',');
            med.append(cost).append(',');
            med.append(0.00).append(',');
            med.append(cost).append(',');
            med.append(cost).append(',');
            med.append(0.00).append(',');
            med.append(0.00).append(',');
            med.append(0.00).append(',');
            if (medication.reasons.size() != 0) {
                Code reasons = medication.reasons.get(0);
                med.append(reasons.code).append(',');
                med.append(clean(reasons.display)).append(',');
                med.append(presentOnAdmission).append(',');
                med.append(diagnosisCode).append(',');
                med.append(diagnosisType).append(',');
            } else {
                med.append("").append(',');
                med.append("").append(',');
                med.append("").append(',');
                med.append("").append(',');
                med.append("").append(',');
            }
            med.append("").append(',');
            med.append(procedureEMPTY).append(NEWLINE);
            s.append(med.toString());
            i++;
        }
        // Devices
        for (Device device : encounter.devices) {
            StringBuilder dev = new StringBuilder();
            dev.append(adminString);
            dev.append(",").append(",").append(",").append(",").append(",").append(",");
            dev.append("01,").append(attributes.getResidence()).append(',');
            dev.append(providerString);
            dev.append(totalsString);
            String typeOfService = "01";
            if (attributes.getNetworkStatus().equals("out")) {
                typeOfService = "11";
            }
            dev.append(dateFromTimestamp(device.start)).append(',');
            dev.append(i).append(',');
            dev.append(dateFromTimestamp(device.stop)).append(',');
            dev.append(typeOfService).append(',');
            dev.append(attributes.getPlaceOfService()).append(',');
            dev.append(attributes.getRevenueCenterCode()).append(',');
            dev.append("").append(',');
            dev.append("").append(',');
            dev.append("").append(',');
            dev.append("").append(',');
            dev.append("").append(',');
            dev.append("").append(',');
            dev.append(attributes.getBenefitPaymentStatus()).append(',');
            dev.append(attributes.getDenialCode()).append(',');
            BigDecimal cost = device.getCost();
            dev.append(0.00).append(',');
            dev.append(0.00).append(',');
            dev.append(0.00).append(',');
            dev.append("").append(',');
            dev.append(cost).append(',');
            dev.append(cost).append(',');
            dev.append(encounter.claim.person.coverage.getTotalCoverage()).append(',');
            dev.append(cost).append(',');
            dev.append(0.00).append(',');
            dev.append(cost).append(',');
            dev.append(cost).append(',');
            dev.append(0.00).append(',');
            dev.append(0.00).append(',');
            dev.append(0.00).append(',');
            dev.append("").append(',');
            dev.append("").append(',');
            dev.append("").append(',');
            dev.append("").append(',');
            dev.append("").append(',');
            dev.append("").append(',');
            String diagnosisCode = "SNOMED";
            String deviceType = "";
            Code deviceCode = device.codes.get(0);
            dev.append(deviceCode.code).append(',');
            dev.append(clean(deviceCode.display)).append(',');
            dev.append(dateFromTimestamp(device.start)).append(',');
            dev.append(diagnosisCode).append(',');
            dev.append(deviceType).append(',');
            dev.append("").append(',');
            dev.append("").append(',');
            dev.append("").append(',');
            dev.append("").append(NEWLINE);
            s.append(dev.toString());
            i++;
        }
    }
    write(s.toString(), claims);
}

Example 30 with Code

use of org.mitre.synthea.world.concepts.HealthRecord.Code in project synthea by synthetichealth.

the class StateTest method condition_onset_diagnosed_by_target_encounter.

@Test
public void condition_onset_diagnosed_by_target_encounter() throws Exception {
    Module module = TestHelper.getFixture("condition_onset.json");
    State condition = module.getState("Diabetes");
    // Should pass through this state immediately without calling the record
    person.history.add(0, condition);
    assertTrue(condition.process(person, time));
    // The encounter comes next (and add it to history);
    State encounter = module.getState("ED_Visit");
    // states are added to history before being processed
    person.history.add(0, encounter);
    assertTrue(encounter.process(person, time));
    assertEquals(1, person.record.encounters.size());
    Encounter enc = person.record.encounters.get(0);
    Code code = enc.codes.get(0);
    assertEquals("50849002", code.code);
    assertEquals("Emergency Room Admission", code.display);
    assertEquals(1, enc.conditions.size());
    code = enc.conditions.get(0).codes.get(0);
    assertEquals("73211009", code.code);
    assertEquals("Diabetes mellitus", code.display);
    Long onsetTime = person.getOnsetConditionRecord().getConditionLastOnsetTimeFromModule(module.name, code.display);
    assertTrue(onsetTime != null);
    assertEquals(time, onsetTime.longValue());
}