Examples with Encounter org.mitre.synthea.world.concepts.HealthRecord.Encounter used on opensource projects

Example 56 with Encounter

use of org.mitre.synthea.world.concepts.HealthRecord.Encounter in project synthea by synthetichealth.

the class StateTest method testMultiObservation.

@Test
public void testMultiObservation() throws Exception {
    // Birth makes the blood pump :-)
    LifecycleModule.birth(person, (long) person.attributes.get(Person.BIRTHDATE));
    Module module = TestHelper.getFixture("observation_groups.json");
    State condition = module.getState("Record_BP");
    assertTrue(condition.process(person, time));
    // for a MultiObservation, we expect only the MultiObs to be added to the record,
    // not the child observations, which get added as components of the parent observation
    Encounter e = person.record.encounters.get(0);
    assertEquals(1, e.observations.size());
    HealthRecord.Observation o = e.observations.get(0);
    assertEquals("55284-4", o.codes.get(0).code);
    assertEquals(2, o.observations.size());
    // diastolic
    assertEquals("8462-4", o.observations.get(0).codes.get(0).code);
    // systolic
    assertEquals("8480-6", o.observations.get(1).codes.get(0).code);
}

Example 57 with Encounter

use of org.mitre.synthea.world.concepts.HealthRecord.Encounter in project synthea by synthetichealth.

the class StateTest method testDeviceEndByAttribute.

@Test
public void testDeviceEndByAttribute() throws Exception {
    Module module = TestHelper.getFixture("artificial_heart_device.json");
    State encounterState = module.getState("Encounter");
    assertTrue(encounterState.process(person, time));
    State deviceState = module.getState("Artificial_Heart");
    assertTrue(deviceState.process(person, time));
    State deviceEndState = module.getState("Remove_Device_By_Attribute");
    assertTrue(deviceEndState.process(person, time));
    Encounter encounter = person.getCurrentEncounter(module);
    List<HealthRecord.Device> devices = encounter.devices;
    HealthRecord.Device device = devices.get(0);
    assertEquals(time, device.stop);
}

Example 58 with Encounter

use of org.mitre.synthea.world.concepts.HealthRecord.Encounter in project synthea by synthetichealth.

the class StateTest method testVaccine.

@Test
public void testVaccine() throws Exception {
    Module module = TestHelper.getFixture("vaccine.json");
    State encounterState = module.getState("Encounter");
    assertTrue(encounterState.process(person, time));
    State supplyListState = module.getState("Vaccine");
    assertTrue(supplyListState.process(person, time));
    Encounter encounter = person.getCurrentEncounter(module);
    List<HealthRecord.Immunization> vaccines = encounter.immunizations;
    assertNotNull(vaccines);
    assertEquals(1, vaccines.size());
    String[] expectedCodes = { "123" };
    String[] expectedDisplays = { "CVX Vaccine Code" };
    for (int i = 0; i < vaccines.size(); i++) {
        HealthRecord.Immunization vaccine = vaccines.get(i);
        Code code = vaccine.codes.get(0);
        assertEquals(expectedCodes[i], code.code);
        assertEquals(expectedDisplays[i], code.display);
    }
}

Example 59 with Encounter

use of org.mitre.synthea.world.concepts.HealthRecord.Encounter in project synthea by synthetichealth.

the class CodeResolveAndExportTest method verifyEncounterCodeDstu2.

private void verifyEncounterCodeDstu2() throws IOException {
    InputStream inputStream = new FileInputStream(dstu2OutputPath.toFile().getAbsolutePath());
    ca.uhn.fhir.model.dstu2.resource.Bundle bundle = (ca.uhn.fhir.model.dstu2.resource.Bundle) FhirDstu2.getContext().newJsonParser().parseResource(inputStream);
    // Find encounter reason code.
    Optional<Entry> maybeEncounterEntry = bundle.getEntry().stream().filter(entry -> entry.getResource().getResourceName().equals(org.hl7.fhir.dstu2.model.ResourceType.Encounter.name())).findFirst();
    assertTrue(maybeEncounterEntry.isPresent());
    ca.uhn.fhir.model.dstu2.resource.Encounter encounterResource = (ca.uhn.fhir.model.dstu2.resource.Encounter) maybeEncounterEntry.get().getResource();
    assertEquals(encounterResource.getReason().size(), 1);
    CodeableConceptDt encounterReason = encounterResource.getReason().get(0);
    assertEquals(encounterReason.getCoding().size(), 1);
    CodingDt reasonCoding = encounterReason.getCoding().get(0);
    // Check encounter reason code.
    assertEquals(SNOMED_URI, reasonCoding.getSystem());
    assertEquals(EXPECTED_REASON_CODE, reasonCoding.getCode());
    assertEquals(EXPECTED_REASON_DISPLAY, reasonCoding.getDisplay());
    Optional<Entry> maybeObservationEntry = bundle.getEntry().stream().filter(entry -> entry.getResource().getResourceName().equals(org.hl7.fhir.dstu2.model.ResourceType.Observation.name())).findFirst();
    assertTrue(maybeObservationEntry.isPresent());
    // Find observation type code.
    ca.uhn.fhir.model.dstu2.resource.Observation observationResource = (ca.uhn.fhir.model.dstu2.resource.Observation) maybeObservationEntry.get().getResource();
    CodeableConceptDt observationType = observationResource.getCode();
    assertNotNull(observationType);
    assertEquals(observationType.getCoding().size(), 1);
    CodingDt observationTypeCoding = observationType.getCoding().get(0);
    // Check observation type code.
    assertEquals(LOINC_URI, observationTypeCoding.getSystem());
    assertEquals(OBSERVATION_CODE, observationTypeCoding.getCode());
    assertEquals(OBSERVATION_DISPLAY, observationTypeCoding.getDisplay());
    // Find observation value code.
    CodeableConceptDt observationValue = (CodeableConceptDt) observationResource.getValue();
    assertNotNull(observationValue);
    assertEquals(observationValue.getCoding().size(), 1);
    CodingDt observationValueCoding = observationValue.getCoding().get(0);
    // Check observation value code.
    assertEquals(LOINC_URI, observationValueCoding.getSystem());
    assertEquals(EXPECTED_VALUE_CODE, observationValueCoding.getCode());
    assertEquals(EXPECTED_VALUE_DISPLAY, observationValueCoding.getDisplay());
    inputStream.close();
}

Example 60 with Encounter

use of org.mitre.synthea.world.concepts.HealthRecord.Encounter in project synthea by synthetichealth.

the class ExporterTest method testExportFilterShouldKeepOldActiveConditions.

@Test
public void testExportFilterShouldKeepOldActiveConditions() {
    record.encounterStart(time - years(10), EncounterType.WELLNESS);
    record.conditionStart(time - years(10), "fakitis");
    record.conditionEnd(time - years(8), "fakitis");
    record.encounterStart(time - years(10), EncounterType.WELLNESS);
    record.conditionStart(time - years(10), "fakosis");
    Person filtered = Exporter.filterForExport(patient, yearsToKeep, endTime);
    Encounter encounter = filtered.record.currentEncounter(time);
    assertEquals(1, encounter.conditions.size());
    assertEquals("fakosis", encounter.conditions.get(0).type);
    assertEquals(time - years(10), encounter.conditions.get(0).start);
}