Examples with Encounter org.mitre.synthea.world.concepts.HealthRecord.Encounter used on opensource projects

Example 16 with Encounter

use of org.mitre.synthea.world.concepts.HealthRecord.Encounter in project synthea by synthetichealth.

the class CodeResolveAndExportTest method verifyEncounterCodeStu3.

private void verifyEncounterCodeStu3() throws IOException {
    InputStream inputStream = new FileInputStream(stu3OutputPath.toFile().getAbsolutePath());
    Bundle bundle = (Bundle) FhirStu3.getContext().newJsonParser().parseResource(inputStream);
    // Find encounter reason code.
    Optional<BundleEntryComponent> maybeEncounterEntry = bundle.getEntry().stream().filter(entry -> entry.getResource().getResourceType().equals(ResourceType.Encounter)).findFirst();
    assertTrue(maybeEncounterEntry.isPresent());
    org.hl7.fhir.dstu3.model.Encounter encounterResource = (org.hl7.fhir.dstu3.model.Encounter) maybeEncounterEntry.get().getResource();
    assertEquals(encounterResource.getReason().size(), 1);
    CodeableConcept encounterReason = encounterResource.getReason().get(0);
    assertEquals(encounterReason.getCoding().size(), 1);
    Coding reasonCoding = encounterReason.getCoding().get(0);
    // Check encounter reason code.
    assertEquals(SNOMED_URI, reasonCoding.getSystem());
    assertEquals(EXPECTED_REASON_CODE, reasonCoding.getCode());
    assertEquals(EXPECTED_REASON_DISPLAY, reasonCoding.getDisplay());
    Optional<BundleEntryComponent> maybeObservationEntry = bundle.getEntry().stream().filter(entry -> entry.getResource().getResourceType().equals(ResourceType.Observation)).findFirst();
    assertTrue(maybeObservationEntry.isPresent());
    // Find observation type code.
    org.hl7.fhir.dstu3.model.Observation observationResource = (org.hl7.fhir.dstu3.model.Observation) maybeObservationEntry.get().getResource();
    CodeableConcept observationType = observationResource.getCode();
    assertNotNull(observationType);
    assertEquals(observationType.getCoding().size(), 1);
    Coding observationTypeCoding = observationType.getCoding().get(0);
    // Check observation type code.
    assertEquals(LOINC_URI, observationTypeCoding.getSystem());
    assertEquals(OBSERVATION_CODE, observationTypeCoding.getCode());
    assertEquals(OBSERVATION_DISPLAY, observationTypeCoding.getDisplay());
    // Find observation value code.
    CodeableConcept observationValue = observationResource.getValueCodeableConcept();
    assertNotNull(observationValue);
    assertEquals(observationValue.getCoding().size(), 1);
    Coding observationValueCoding = observationValue.getCoding().get(0);
    // Check observation value code.
    assertEquals(LOINC_URI, observationValueCoding.getSystem());
    assertEquals(EXPECTED_VALUE_CODE, observationValueCoding.getCode());
    assertEquals(EXPECTED_VALUE_DISPLAY, observationValueCoding.getDisplay());
    inputStream.close();
}

Example 17 with Encounter

use of org.mitre.synthea.world.concepts.HealthRecord.Encounter in project synthea by synthetichealth.

the class CodeResolveAndExportTest method verifyEncounterCodeR4.

private void verifyEncounterCodeR4() throws IOException {
    InputStream inputStream = new FileInputStream(r4OutputPath.toFile().getAbsolutePath());
    org.hl7.fhir.r4.model.Bundle bundle = (org.hl7.fhir.r4.model.Bundle) FhirR4.getContext().newJsonParser().parseResource(inputStream);
    // Find encounter reason code.
    Optional<org.hl7.fhir.r4.model.Bundle.BundleEntryComponent> maybeEncounterEntry = bundle.getEntry().stream().filter(entry -> entry.getResource().getResourceType().equals(org.hl7.fhir.r4.model.ResourceType.Encounter)).findFirst();
    assertTrue(maybeEncounterEntry.isPresent());
    org.hl7.fhir.r4.model.Encounter encounterResource = (org.hl7.fhir.r4.model.Encounter) maybeEncounterEntry.get().getResource();
    assertEquals(encounterResource.getReasonCode().size(), 1);
    org.hl7.fhir.r4.model.CodeableConcept encounterReason = encounterResource.getReasonCode().get(0);
    assertEquals(encounterReason.getCoding().size(), 1);
    org.hl7.fhir.r4.model.Coding reasonCoding = encounterReason.getCoding().get(0);
    // Check encounter reason code.
    assertEquals(SNOMED_URI, reasonCoding.getSystem());
    assertEquals(EXPECTED_REASON_CODE, reasonCoding.getCode());
    assertEquals(EXPECTED_REASON_DISPLAY, reasonCoding.getDisplay());
    Optional<org.hl7.fhir.r4.model.Bundle.BundleEntryComponent> maybeObservationEntry = bundle.getEntry().stream().filter(entry -> entry.getResource().getResourceType().equals(org.hl7.fhir.r4.model.ResourceType.Observation)).findFirst();
    assertTrue(maybeObservationEntry.isPresent());
    // Find observation type code.
    org.hl7.fhir.r4.model.Observation observationResource = (org.hl7.fhir.r4.model.Observation) maybeObservationEntry.get().getResource();
    org.hl7.fhir.r4.model.CodeableConcept observationType = observationResource.getCode();
    assertNotNull(observationType);
    assertEquals(observationType.getCoding().size(), 1);
    org.hl7.fhir.r4.model.Coding observationTypeCoding = observationType.getCoding().get(0);
    // Check observation type code.
    assertEquals(LOINC_URI, observationTypeCoding.getSystem());
    assertEquals(OBSERVATION_CODE, observationTypeCoding.getCode());
    assertEquals(OBSERVATION_DISPLAY, observationTypeCoding.getDisplay());
    // Find observation value code.
    org.hl7.fhir.r4.model.CodeableConcept observationValue = observationResource.getValueCodeableConcept();
    assertNotNull(observationValue);
    assertEquals(observationValue.getCoding().size(), 1);
    org.hl7.fhir.r4.model.Coding observationValueCoding = observationValue.getCoding().get(0);
    // Check observation value code.
    assertEquals(LOINC_URI, observationValueCoding.getSystem());
    assertEquals(EXPECTED_VALUE_CODE, observationValueCoding.getCode());
    assertEquals(EXPECTED_VALUE_DISPLAY, observationValueCoding.getDisplay());
    inputStream.close();
}

Example 18 with Encounter

use of org.mitre.synthea.world.concepts.HealthRecord.Encounter in project synthea by synthetichealth.

the class ExporterTest method testExportFilterShouldKeepCareplanThatEndedDuringTarget.

@Test
public void testExportFilterShouldKeepCareplanThatEndedDuringTarget() {
    record.encounterStart(time - years(10), EncounterType.WELLNESS);
    record.careplanStart(time - years(10), "stop_smoking");
    record.careplanEnd(time - years(1), "stop_smoking", DUMMY_CODE);
    Person filtered = Exporter.filterForExport(patient, yearsToKeep, endTime);
    Encounter encounter = filtered.record.currentEncounter(time);
    assertEquals(1, encounter.careplans.size());
    assertEquals("stop_smoking", encounter.careplans.get(0).type);
    assertEquals(time - years(10), encounter.careplans.get(0).start);
    assertEquals(time - years(1), encounter.careplans.get(0).stop);
}

Example 19 with Encounter

use of org.mitre.synthea.world.concepts.HealthRecord.Encounter in project synthea by synthetichealth.

the class ExporterTest method testExportFilterShouldKeepMedicationThatEndedDuringTarget.

@Test
public void testExportFilterShouldKeepMedicationThatEndedDuringTarget() {
    Code code = new Code("SNOMED-CT", "705129", "Fake Code");
    record.encounterStart(time - years(10), EncounterType.AMBULATORY);
    Medication med = record.medicationStart(time - years(10), "dimoxinil", false);
    med.codes.add(code);
    record.medicationEnd(time - years(9), "dimoxinil", DUMMY_CODE);
    record.encounterStart(time - years(8), EncounterType.AMBULATORY);
    med = record.medicationStart(time - years(8), "placebitol", true);
    med.codes.add(code);
    record.medicationEnd(time - years(4), "placebitol", DUMMY_CODE);
    Person filtered = Exporter.filterForExport(patient, yearsToKeep, endTime);
    Encounter encounter = filtered.record.currentEncounter(time);
    assertEquals(1, encounter.medications.size());
    assertEquals("placebitol", encounter.medications.get(0).type);
    assertEquals(time - years(8), encounter.medications.get(0).start);
    assertEquals(time - years(4), encounter.medications.get(0).stop);
}

Example 20 with Encounter

use of org.mitre.synthea.world.concepts.HealthRecord.Encounter in project synthea by synthetichealth.

the class ExporterTest method testExportFilterShouldKeepConditionThatEndedDuringTarget.

@Test
public void testExportFilterShouldKeepConditionThatEndedDuringTarget() {
    record.encounterStart(time - years(10), EncounterType.WELLNESS);
    record.conditionStart(time - years(10), "boneitis");
    record.conditionEnd(time - years(2), "boneitis");
    record.encounterStart(time - years(10), EncounterType.WELLNESS);
    record.conditionStart(time - years(10), "smallpox");
    record.conditionEnd(time - years(9), "smallpox");
    Person filtered = Exporter.filterForExport(patient, yearsToKeep, endTime);
    Encounter encounter = filtered.record.currentEncounter(time);
    assertEquals(1, encounter.conditions.size());
    assertEquals("boneitis", encounter.conditions.get(0).type);
    assertEquals(time - years(10), encounter.conditions.get(0).start);
}