Examples with Entity org.molgenis.data.Entity used on opensource projects

Example 86 with Entity

use of org.molgenis.data.Entity in project molgenis by molgenis.

the class CaddAnnotatorTest method testFourOccurences.

@Test
public void testFourOccurences() {
    Iterator<Entity> results = annotator.annotate(input3);
    Entity resultEntity = results.next();
    assertEquals(resultEntity.get(CaddAnnotator.CADD_ABS), "0.5");
    assertEquals(resultEntity.get(CaddAnnotator.CADD_SCALED), "14.5");
}

Example 87 with Entity

use of org.molgenis.data.Entity in project molgenis by molgenis.

the class CaddAnnotatorTest method testEightSingleAllelicIns.

@Test
public void testEightSingleAllelicIns() {
    Iterator<Entity> results = annotator.annotate(input7);
    Entity resultEntity = results.next();
    assertEquals(resultEntity.get(CaddAnnotator.CADD_ABS), "1.5");
    assertEquals(resultEntity.get(CaddAnnotator.CADD_SCALED), "15.5");
}

Example 88 with Entity

use of org.molgenis.data.Entity in project molgenis by molgenis.

the class CaddAnnotatorTest method testSixMultiAllelicDel.

@Test
public void testSixMultiAllelicDel() {
    Iterator<Entity> results = annotator.annotate(input5);
    Entity resultEntity = results.next();
    assertEquals(resultEntity.get(CaddAnnotator.CADD_ABS), "-3.4,1.2");
    assertEquals(resultEntity.get(CaddAnnotator.CADD_SCALED), "1.123,24.1");
}

Example 89 with Entity

use of org.molgenis.data.Entity in project molgenis by molgenis.

the class CaddAnnotatorTest method testTwoOccurencesNoMatch.

@Test
public void testTwoOccurencesNoMatch() {
    Iterator<Entity> results = annotator.annotate(input2);
    Entity resultEntity = results.next();
    assertEquals(resultEntity.get(CaddAnnotator.CADD_ABS), null);
    assertEquals(resultEntity.get(CaddAnnotator.CADD_SCALED), null);
}

Example 90 with Entity

use of org.molgenis.data.Entity in project molgenis by molgenis.

the class CaddAnnotatorTest method testFiveMultiAllelic.

@Test
public void testFiveMultiAllelic() {
    Iterator<Entity> results = annotator.annotate(input4);
    Entity resultEntity = results.next();
    assertEquals(resultEntity.get(CaddAnnotator.CADD_ABS), "-2.4,0.2,0.5");
    assertEquals(resultEntity.get(CaddAnnotator.CADD_SCALED), "0.123,23.1,14.5");
}