Examples with RepositoryCollection org.molgenis.data.RepositoryCollection used on opensource projects

Example 6 with RepositoryCollection

use of org.molgenis.data.RepositoryCollection in project molgenis by molgenis.

the class EntityTypeValidatorTest method setUpBeforeMethod.

@SuppressWarnings("unchecked")
@BeforeMethod
public void setUpBeforeMethod() {
    dataService = mock(DataService.class);
    MetaDataService metaDataService = mock(MetaDataService.class);
    when(dataService.getMeta()).thenReturn(metaDataService);
    systemEntityTypeRegistry = mock(SystemEntityTypeRegistry.class);
    entityTypeValidator = new EntityTypeValidator(dataService, systemEntityTypeRegistry);
    String backendName = "backend";
    RepositoryCollection repoCollection = mock(RepositoryCollection.class);
    when(metaDataService.getBackend(backendName)).thenReturn(repoCollection);
    // valid entity meta
    entityType = when(mock(EntityType.class).getId()).thenReturn("entity").getMock();
    idAttr = when(mock(Attribute.class).getName()).thenReturn("idAttr").getMock();
    when(idAttr.getIdentifier()).thenReturn("#idAttr");
    when(idAttr.getDataType()).thenReturn(STRING);
    when(idAttr.isUnique()).thenReturn(true);
    when(idAttr.isNillable()).thenReturn(false);
    labelAttr = when(mock(Attribute.class).getName()).thenReturn("labelAttr").getMock();
    when(labelAttr.getIdentifier()).thenReturn("#labelAttr");
    when(labelAttr.getDataType()).thenReturn(STRING);
    entityQ = mock(Query.class);
    when(dataService.query(ENTITY_TYPE_META_DATA, EntityType.class)).thenReturn(entityQ);
    Query<EntityType> entityQ0 = mock(Query.class);
    Query<EntityType> entityQ1 = mock(Query.class);
    when(entityQ.eq(ATTRIBUTES, idAttr)).thenReturn(entityQ0);
    when(entityQ.eq(ATTRIBUTES, labelAttr)).thenReturn(entityQ1);
    when(entityQ0.findOne()).thenReturn(null);
    when(entityQ1.findOne()).thenReturn(null);
    attrQ = mock(Query.class);
    Query<Attribute> attrQ0 = mock(Query.class);
    Query<Attribute> attrQ1 = mock(Query.class);
    when(dataService.query(ATTRIBUTE_META_DATA, Attribute.class)).thenReturn(attrQ);
    when(attrQ.eq(CHILDREN, idAttr)).thenReturn(attrQ0);
    when(attrQ.eq(CHILDREN, labelAttr)).thenReturn(attrQ1);
    when(attrQ0.findOne()).thenReturn(null);
    when(attrQ1.findOne()).thenReturn(null);
    String packageName = "package";
    Package package_ = when(mock(Package.class).getId()).thenReturn(packageName).getMock();
    when(entityType.getPackage()).thenReturn(package_);
    String name = "name";
    String label = "label";
    when(entityType.getId()).thenReturn(packageName + PACKAGE_SEPARATOR + name);
    when(entityType.getLabel()).thenReturn(label);
    when(entityType.getOwnAllAttributes()).thenReturn(newArrayList(idAttr, labelAttr));
    when(entityType.getAllAttributes()).thenReturn(newArrayList(idAttr, labelAttr));
    when(entityType.getOwnIdAttribute()).thenReturn(idAttr);
    when(entityType.getOwnLabelAttribute()).thenReturn(labelAttr);
    when(entityType.getOwnLookupAttributes()).thenReturn(singletonList(labelAttr));
    when(entityType.isAbstract()).thenReturn(false);
    when(entityType.getExtends()).thenReturn(null);
    when(entityType.getBackend()).thenReturn(backendName);
}

Example 7 with RepositoryCollection

use of org.molgenis.data.RepositoryCollection in project molgenis by molgenis.

the class RepositoryCollectionDecoratorFactoryImpl method createDecoratedRepositoryCollection.

@Override
public RepositoryCollection createDecoratedRepositoryCollection(RepositoryCollection repositoryCollection) {
    RepositoryCollection repoCollectionDecorator = new RepositoryCollectionDecorator(repositoryCollection, repositoryDecoratorFactory);
    repoCollectionDecorator = new IndexActionRepositoryCollectionDecorator(repoCollectionDecorator, indexActionRegisterService);
    return repoCollectionDecorator;
}

Example 8 with RepositoryCollection

use of org.molgenis.data.RepositoryCollection in project molgenis by molgenis.

the class SystemEntityTypePersisterTest method setUpBeforeMethod.

@BeforeMethod
public void setUpBeforeMethod() {
    RepositoryCollection defaultRepoCollection = mock(RepositoryCollection.class);
    when(metaDataService.getDefaultBackend()).thenReturn(defaultRepoCollection);
    when(dataService.getMeta()).thenReturn(metaDataService);
    systemEntityTypePersister = new SystemEntityTypePersister(dataService, systemEntityTypeRegistry, entityTypeDependencyResolver, systemPackageRegistry, mutableAclClassService);
}

Example 9 with RepositoryCollection

use of org.molgenis.data.RepositoryCollection in project molgenis by molgenis.

the class SystemEntityTypePersister method persistMetadataMetadata.

private void persistMetadataMetadata() {
    RepositoryCollection metadataRepoCollection = dataService.getMeta().getDefaultBackend();
    // collect meta entity meta
    List<EntityType> metaEntityTypeList = systemEntityTypeRegistry.getSystemEntityTypes().filter(MetaDataService::isMetaEntityType).collect(toList());
    List<EntityType> resolvedEntityTypeList = entityTypeDependencyResolver.resolve(metaEntityTypeList);
    resolvedEntityTypeList.forEach(metaEntityType -> {
        if (!metadataRepoCollection.hasRepository(metaEntityType)) {
            metadataRepoCollection.createRepository(metaEntityType);
        }
    });
}

Example 10 with RepositoryCollection

use of org.molgenis.data.RepositoryCollection in project molgenis by molgenis.

the class EntityTypeValidator method validateBackend.

/**
 * Validate that the entity meta data backend exists
 *
 * @param entityType entity meta data
 * @throws MolgenisValidationException if the entity meta data backend does not exist
 */
private void validateBackend(EntityType entityType) {
    // Validate backend exists
    String backendName = entityType.getBackend();
    RepositoryCollection repoCollection = dataService.getMeta().getBackend(backendName);
    if (repoCollection == null) {
        throw new MolgenisValidationException(new ConstraintViolation(format("Unknown backend [%s]", backendName)));
    }
}