Examples with UnknownEntityTypeException org.molgenis.data.UnknownEntityTypeException used on opensource projects

Example 21 with UnknownEntityTypeException

use of org.molgenis.data.UnknownEntityTypeException in project molgenis by molgenis.

the class UntypedTagService method findAttributeEntity.

private Entity findAttributeEntity(EntityType entityType, String attributeName) {
    Entity entityTypeEntity = dataService.findOneById(ENTITY_TYPE_META_DATA, entityType.getId());
    if (entityTypeEntity == null) {
        throw new UnknownEntityTypeException(entityType.getId());
    }
    Optional<Entity> result = stream(entityTypeEntity.getEntities(ATTRIBUTES)).filter(att -> attributeName.equals(att.getString(AttributeMetadata.NAME))).findFirst();
    return result.orElse(null);
}

Example 22 with UnknownEntityTypeException

use of org.molgenis.data.UnknownEntityTypeException in project molgenis by molgenis.

the class RestControllerV2Test method testUpdateEntitiesSpecificAttributeUnknownEntity.

@Test
void testUpdateEntitiesSpecificAttributeUnknownEntity() throws Throwable {
    String unknownEntityTypeId = "entity2";
    doThrow(new UnknownEntityTypeException(unknownEntityTypeId)).when(dataService).getEntityType(unknownEntityTypeId);
    try {
        mockMvc.perform(put(BASE_URI + "/" + unknownEntityTypeId + "/" + "email").content("{entities:[{email:'test@email.com'}]}").contentType(APPLICATION_JSON));
    } catch (NestedServletException e) {
        Exception exception = assertThrows(UnknownEntityTypeException.class, () -> {
            throw e.getCause();
        });
        assertThat(exception.getMessage()).containsPattern("id:entity2");
    }
}

Example 23 with UnknownEntityTypeException

use of org.molgenis.data.UnknownEntityTypeException in project molgenis by molgenis.

the class RestControllerV2Test method testUpdateEntitiesUnknownEntity.

@Test
void testUpdateEntitiesUnknownEntity() throws Throwable {
    String unknownEntityTypeId = "entity2";
    doThrow(new UnknownEntityTypeException(unknownEntityTypeId)).when(dataService).getEntityType(unknownEntityTypeId);
    try {
        mockMvc.perform(put(BASE_URI + "/" + "entity2").content("{entities:[{email:'test@email.com'}]}").contentType(APPLICATION_JSON));
    } catch (NestedServletException e) {
        Exception exception = assertThrows(UnknownEntityTypeException.class, () -> {
            throw e.getCause();
        });
        assertThat(exception.getMessage()).containsPattern("id:entity2");
    }
}

Example 24 with UnknownEntityTypeException

use of org.molgenis.data.UnknownEntityTypeException in project molgenis by molgenis.

the class RestControllerV2 method copyEntity.

/**
 * Copy an entity.
 *
 * @deprecated use the navigator in the ui to copy entities.
 * @param entityTypeId name of the entity that will be copied.
 * @param request CopyEntityRequestV2
 * @param response HttpServletResponse
 * @return String name of the new entity
 */
@Deprecated
@Transactional
@WithJsMagmaScriptContext
@PostMapping(value = "copy/{entityTypeId}", produces = APPLICATION_JSON_VALUE)
public String copyEntity(@PathVariable("entityTypeId") String entityTypeId, @RequestBody @Valid CopyEntityRequestV2 request, HttpServletResponse response) {
    UriComponentsBuilder uriBuilder = createUriBuilder();
    // No repo
    if (!dataService.hasRepository(entityTypeId)) {
        throw new UnknownEntityTypeException(entityTypeId);
    }
    Repository<Entity> repositoryToCopyFrom = dataService.getRepository(entityTypeId);
    // Validate the new name
    NameValidator.validateEntityName(request.getNewEntityName());
    // Check if the entity already exists
    String newFullName = EntityTypeUtils.buildFullName(repositoryToCopyFrom.getEntityType().getPackage(), request.getNewEntityName());
    if (dataService.hasRepository(newFullName)) {
        throw new RepositoryAlreadyExistsException(newFullName);
    }
    // Permission
    boolean readPermission = permissionService.hasPermission(new EntityTypeIdentity(repositoryToCopyFrom.getName()), EntityTypePermission.READ_DATA);
    if (!readPermission) {
        throw new EntityTypePermissionDeniedException(EntityTypePermission.READ_DATA, entityTypeId);
    }
    // Capabilities
    boolean writableCapabilities = dataService.getCapabilities(repositoryToCopyFrom.getName()).contains(RepositoryCapability.WRITABLE);
    if (!writableCapabilities) {
        throw new RepositoryNotCapableException(repositoryToCopyFrom.getName(), RepositoryCapability.WRITABLE);
    }
    // Copy
    Repository<Entity> repository = repoCopier.copyRepository(repositoryToCopyFrom, request.getNewEntityName(), repositoryToCopyFrom.getEntityType().getPackage(), request.getNewEntityName());
    // Retrieve new repo
    permissionSystemService.giveUserWriteMetaPermissions(repository.getEntityType());
    response.addHeader("Location", UriUtils.createEntityCollectionUriPath(uriBuilder, repository.getName()));
    response.setStatus(HttpServletResponse.SC_CREATED);
    return repository.getName();
}

Example 25 with UnknownEntityTypeException

use of org.molgenis.data.UnknownEntityTypeException in project molgenis by molgenis.

the class EntityTypeRequestMapperImpl method updateEntityType.

@SuppressWarnings({ "java:S1192" })
private // ATTRIBUTES constant in this class is not related to the one in this switch
void updateEntityType(EntityType entityType, Entry<String, Object> entry) {
    switch(entry.getKey()) {
        case "package":
            String packageId = String.valueOf(entry.getValue());
            Package pack = metaDataService.getPackage(packageId).orElseThrow(() -> new UnknownPackageException(packageId));
            entityType.setPackage(pack);
            break;
        case "id":
        case "abstract":
            throw new ReadOnlyFieldException(entry.getKey(), "entityType");
        case "extends":
            String extendsValue = String.valueOf(entry.getValue());
            EntityType parent = metaDataService.getEntityType(extendsValue).orElseThrow(() -> new UnknownEntityTypeException(extendsValue));
            entityType.setExtends(parent);
            break;
        case "label":
            I18nValue label = I18nValueMapper.toI18nValue(entry.getValue());
            processI18nLabel(label, entityType);
            break;
        case "description":
            I18nValue description = I18nValueMapper.toI18nValue(entry.getValue());
            processI18nDescription(description, entityType);
            break;
        case "attributes":
            if (entry.getValue() != null) {
                Iterable<Attribute> attributes = mapAttributes(entityType, entry);
                entityType.setOwnAllAttributes(attributes);
            } else {
                throw new EmptyAttributesException();
            }
            break;
        case "tags":
        case "backend":
            throw new UnsupportedFieldException(entry.getKey());
        default:
            throw new InvalidKeyException("entityType", entry.getKey());
    }
}