Examples with FileMeta org.molgenis.data.file.model.FileMeta used on opensource projects

Example 16 with FileMeta

use of org.molgenis.data.file.model.FileMeta in project molgenis by molgenis.

the class AppRepositoryDecoratorTest method getMockApp.

private App getMockApp(String id, boolean isActive, String resourceFilename) {
    App app = mock(App.class);
    when(app.getId()).thenReturn(id);
    when(app.getName()).thenReturn(APP_NAME);
    when(app.isActive()).thenReturn(isActive);
    when(app.getUseFreemarkerTemplate()).thenReturn(true);
    if (resourceFilename != null) {
        FileMeta fileMeta = mock(FileMeta.class);
        when(fileMeta.getId()).thenReturn(resourceFilename);
        when(fileMeta.getFilename()).thenReturn(resourceFilename);
        when(app.getSourceFiles()).thenReturn(fileMeta);
        when(fileStore.getFile(resourceFilename)).thenReturn(getFile(getClass(), '/' + resourceFilename));
        when(fileStore.getStorageDir()).thenReturn("target/generated-test-resources");
    }
    return app;
}

Example 17 with FileMeta

use of org.molgenis.data.file.model.FileMeta in project molgenis by molgenis.

the class AmazonBucketIngester method createFileMeta.

private FileMeta createFileMeta(String jobExecutionID, File file) {
    FileMeta fileMeta = fileMetaFactory.create(jobExecutionID);
    fileMeta.setContentType("application/vnd.openxmlformats-officedocument.spreadsheetml.sheet");
    fileMeta.setSize(file.length());
    fileMeta.setFilename(jobExecutionID + '/' + file.getName());
    fileMeta.setUrl("/files/" + jobExecutionID);
    return fileMeta;
}

Example 18 with FileMeta

use of org.molgenis.data.file.model.FileMeta in project molgenis by molgenis.

the class PostgreSqlUtils method getPostgreSqlValue.

/**
 * Returns the PostgreSQL value for the given entity attribute
 *
 * @param entity entity
 * @param attr   attribute
 * @return PostgreSQL value
 */
static Object getPostgreSqlValue(Entity entity, Attribute attr) {
    String attrName = attr.getName();
    AttributeType attrType = attr.getDataType();
    switch(attrType) {
        case BOOL:
            return entity.getBoolean(attrName);
        case CATEGORICAL:
        case XREF:
            Entity xrefEntity = entity.getEntity(attrName);
            return xrefEntity != null ? getPostgreSqlValue(xrefEntity, xrefEntity.getEntityType().getIdAttribute()) : null;
        case CATEGORICAL_MREF:
        case MREF:
        case ONE_TO_MANY:
            Iterable<Entity> entities = entity.getEntities(attrName);
            return stream(entities.spliterator(), false).map(mrefEntity -> getPostgreSqlValue(mrefEntity, mrefEntity.getEntityType().getIdAttribute())).collect(toList());
        case DATE:
            return entity.getLocalDate(attrName);
        case DATE_TIME:
            // As a workaround for #5674, we don't store milliseconds
            Instant instant = entity.getInstant(attrName);
            return instant != null ? instant.truncatedTo(ChronoUnit.SECONDS).atOffset(UTC) : null;
        case DECIMAL:
            return entity.getDouble(attrName);
        case EMAIL:
        case ENUM:
        case HTML:
        case HYPERLINK:
        case SCRIPT:
        case STRING:
        case TEXT:
            return entity.getString(attrName);
        case FILE:
            FileMeta fileEntity = entity.getEntity(attrName, FileMeta.class);
            return fileEntity != null ? getPostgreSqlValue(fileEntity, fileEntity.getEntityType().getIdAttribute()) : null;
        case INT:
            return entity.getInt(attrName);
        case LONG:
            return entity.getLong(attrName);
        case COMPOUND:
            throw new RuntimeException(format("Illegal attribute type [%s]", attrType.toString()));
        default:
            throw new UnexpectedEnumException(attrType);
    }
}

Example 19 with FileMeta

use of org.molgenis.data.file.model.FileMeta in project molgenis by molgenis.

the class StyleServiceTest method addBootstrap3StyleOnly.

@Test
public void addBootstrap3StyleOnly() throws IOException, MolgenisStyleException {
    // setup
    String styleId = "my-style.min.css";
    String bs3FileName = "bs3FileName";
    InputStream bs3Data = IOUtils.toInputStream("bs 3 data", "UTF-8");
    Repository styleSheetRepository = mock(Repository.class);
    when(dataService.getRepository(STYLE_SHEET)).thenReturn(styleSheetRepository);
    when(styleSheetRepository.findOneById(styleId)).thenReturn(null);
    String generatedId = "my-id";
    when(idGenerator.generateId()).thenReturn(generatedId);
    StyleSheet styleSheet = mock(StyleSheet.class);
    when(styleSheet.getName()).thenReturn(styleId);
    when(styleSheetFactory.create(styleId)).thenReturn(styleSheet);
    FileMeta fileMeta = mock(FileMeta.class);
    when(fileMetaFactory.create(generatedId)).thenReturn(fileMeta);
    File storedFile = mock(File.class);
    when(storedFile.length()).thenReturn(123L);
    when(fileStore.getFile(generatedId)).thenReturn(storedFile);
    // execute
    styleService.addStyle(styleId, bs3FileName, bs3Data, null, null);
    // verify
    verify(styleSheet).setName(styleId);
    verify(dataService, times(1)).add(STYLE_SHEET, styleSheet);
    verify(fileStore, times(1)).store(bs3Data, generatedId);
    verify(dataService, times(1)).add(FileMetaMetaData.FILE_META, fileMeta);
}

Example 20 with FileMeta

use of org.molgenis.data.file.model.FileMeta in project molgenis by molgenis.

the class StyleServiceTest method addBootstrap3And4Styles.

@Test
public void addBootstrap3And4Styles() throws IOException, MolgenisStyleException {
    // setup
    String styleId = "my-style.min.css";
    String bs3FileName = "bs3FileName";
    String bs4FileName = "bs4FileName";
    InputStream bs3Data = IOUtils.toInputStream("bs 3 data", "UTF-8");
    InputStream bs4Data = IOUtils.toInputStream("bs 4 data", "UTF-8");
    Repository styleSheetRepository = mock(Repository.class);
    when(dataService.getRepository(STYLE_SHEET)).thenReturn(styleSheetRepository);
    when(styleSheetRepository.findOneById(styleId)).thenReturn(null);
    String generatedId = "my-id";
    when(idGenerator.generateId()).thenReturn(generatedId);
    StyleSheet styleSheet = mock(StyleSheet.class);
    when(styleSheet.getName()).thenReturn(styleId);
    when(styleSheetFactory.create(styleId)).thenReturn(styleSheet);
    FileMeta fileMeta = mock(FileMeta.class);
    when(fileMetaFactory.create(generatedId)).thenReturn(fileMeta);
    File storedFile = mock(File.class);
    when(storedFile.length()).thenReturn(123L);
    when(fileStore.getFile(generatedId)).thenReturn(storedFile);
    // execute
    styleService.addStyle(styleId, bs3FileName, bs3Data, bs4FileName, bs4Data);
    // verify
    verify(styleSheet).setName(styleId);
    verify(dataService, times(1)).add(STYLE_SHEET, styleSheet);
    verify(fileStore, times(1)).store(bs3Data, generatedId);
    verify(fileStore, times(1)).store(bs4Data, generatedId);
    // two times, once for each style file
    verify(dataService, times(2)).add(FileMetaMetaData.FILE_META, fileMeta);
}