Examples with Package org.molgenis.data.meta.model.Package used on opensource projects

Example 96 with Package

use of org.molgenis.data.meta.model.Package in project molgenis by molgenis.

the class RestControllerV2Test method testCopyEntity.

@Test
public void testCopyEntity() throws Exception {
    @SuppressWarnings("unchecked") Repository<Entity> repositoryToCopy = mock(Repository.class);
    Package pack = mocksForCopyEntitySuccess(repositoryToCopy);
    String content = "{newEntityName: 'newEntity'}";
    mockMvc.perform(post(HREF_COPY_ENTITY).content(content).contentType(APPLICATION_JSON)).andExpect(status().isCreated()).andExpect(content().contentType(APPLICATION_JSON_UTF8)).andExpect(content().string("\"org_molgenis_blah_newEntity\"")).andExpect(header().string("Location", "/api/v2/org_molgenis_blah_newEntity"));
    verify(repoCopier).copyRepository(repositoryToCopy, "newEntity", pack, "newEntity");
}

Example 97 with Package

use of org.molgenis.data.meta.model.Package in project molgenis by molgenis.

the class MappingServiceControllerTest method testScheduleMappingJobSystemPackage.

@Test
public void testScheduleMappingJobSystemPackage() throws Exception {
    when(mappingService.getMappingProject("mappingProjectId")).thenReturn(mappingProject);
    Package systemPackage = mock(Package.class);
    when(systemPackage.getId()).thenReturn("sys");
    when(metaDataService.getPackage("sys")).thenReturn(systemPackage);
    mockMvc.perform(post(URI + "/map").param("mappingProjectId", "mappingProjectId").param("targetEntityTypeId", "targetEntityTypeId").param("label", "label").param("package", "sys").accept("text/plain")).andExpect(status().isBadRequest()).andExpect(content().contentType("text/plain")).andExpect(content().string("Package [sys] is a system package."));
}

Example 98 with Package

use of org.molgenis.data.meta.model.Package in project molgenis by molgenis.

the class OntologyTagServiceTest method testGetTagsForPackage.

@Test
public void testGetTagsForPackage() {
    Package p = packageFactory.create("test", "desc");
    Package pack = packageFactory.create();
    pack.setTags(singletonList(chromosomeNameTagEntity));
    when(ontologyService.getOntology("http://edamontology.org")).thenReturn(EDAM_ONTOLOGY);
    when(ontologyService.getOntologyTerm("http://edamontology.org/data_0987")).thenReturn(CHROMOSOME_NAME_ONTOLOGY_TERM);
    when(dataService.findOneById(PACKAGE, "test")).thenReturn(pack);
    assertEquals(ontologyTagService.getTagsForPackage(p), singletonList(new SemanticTag<>("1234", p, Relation.forIRI("http://molgenis.org/biobankconnect/instanceOf"), OntologyTerm.create("http://edamontology.org/data_0987", "Chromosome name", "Name of a chromosome."), Ontology.create("EDAM", "http://edamontology.org", "The EDAM ontology."))));
}