Examples with LabeledResource org.molgenis.data.semantic.LabeledResource used on opensource projects

Example 6 with LabeledResource

use of org.molgenis.data.semantic.LabeledResource in project molgenis by molgenis.

the class EntityModelWriterTest method testCreateRfdModelNullValuePlusHyperlink.

@Test
public void testCreateRfdModelNullValuePlusHyperlink() {
    // public Model createRdfModel(String subjectIRI, Entity objectEntity)
    Entity objectEntity = mock(Entity.class);
    EntityType entityType = mock(EntityType.class);
    Attribute attribute1 = mock(Attribute.class);
    Attribute attribute2 = mock(Attribute.class);
    List<Attribute> attributeList = Arrays.asList(attribute1, attribute2);
    when(objectEntity.getEntityType()).thenReturn(entityType);
    when(objectEntity.get("attribute1Name")).thenReturn(null);
    String value = "http://molgenis.org/index.html";
    doReturn(value).when(objectEntity).get("attribute2Name");
    when(objectEntity.getString("attribute2Name")).thenReturn(value);
    when(entityType.getAtomicAttributes()).thenReturn(attributeList);
    when(attribute1.getName()).thenReturn("attribute1Name");
    when(attribute2.getName()).thenReturn("attribute2Name");
    when(attribute2.getDataType()).thenReturn(AttributeType.HYPERLINK);
    LabeledResource tag2 = new LabeledResource("http://IRI1.nl", "tag1 label");
    Multimap<Relation, LabeledResource> tags2 = ImmutableMultimap.of(Relation.isAssociatedWith, tag2);
    doReturn(tags2).when(tagService).getTagsForAttribute(entityType, attribute2);
    Model result = writer.createRdfModel("http://molgenis01.gcc.rug.nl/fdp/catolog/test/this", objectEntity);
    assertEquals(result.size(), 1);
    Iterator results = result.iterator();
    assertEquals(results.next().toString(), "(http://molgenis01.gcc.rug.nl/fdp/catolog/test/this, http://IRI1.nl, http://molgenis.org/index.html) [null]");
}

Example 7 with LabeledResource

use of org.molgenis.data.semantic.LabeledResource in project molgenis by molgenis.

the class UntypedTagService method getTagsForAttribute.

@Override
@RunAsSystem
public Multimap<Relation, LabeledResource> getTagsForAttribute(EntityType entityType, Attribute attribute) {
    Entity entity = findAttributeEntity(entityType, attribute.getName());
    if (entity == null)
        return ArrayListMultimap.create();
    Multimap<Relation, LabeledResource> tags = ArrayListMultimap.create();
    for (Entity tagEntity : entity.getEntities(AttributeMetadata.TAGS)) {
        SemanticTag<Attribute, LabeledResource, LabeledResource> tag = SemanticTag.asTag(attribute, tagEntity);
        tags.put(tag.getRelation(), tag.getObject());
    }
    return tags;
}

Example 8 with LabeledResource

use of org.molgenis.data.semantic.LabeledResource in project molgenis by molgenis.

the class EntityModelWriter method addStatementsForAttributeTags.

private void addStatementsForAttributeTags(Entity objectEntity, Model model, Resource subject, EntityType entityType) {
    for (Attribute objectAttribute : entityType.getAtomicAttributes()) {
        Object value = objectEntity.get(objectAttribute.getName());
        if (value == null) {
            continue;
        }
        for (LabeledResource tag : tagService.getTagsForAttribute(entityType, objectAttribute).get(Relation.isAssociatedWith)) {
            IRI predicate = valueFactory.createIRI(tag.getIri());
            addRelationForAttribute(model, subject, predicate, objectEntity, objectAttribute);
        }
    }
}

Example 9 with LabeledResource

use of org.molgenis.data.semantic.LabeledResource in project molgenis by molgenis.

the class EntityModelWriter method addStatementsForEntityTags.

void addStatementsForEntityTags(Model model, Resource subject, EntityType entityType) {
    for (SemanticTag<EntityType, LabeledResource, LabeledResource> tag : tagService.getTagsForEntity(entityType)) {
        if (tag.getRelation() == Relation.isAssociatedWith) {
            LabeledResource object = tag.getObject();
            model.add(subject, rdfTypePredicate, valueFactory.createIRI(object.getIri()));
        }
    }
}

Example 10 with LabeledResource

use of org.molgenis.data.semantic.LabeledResource in project molgenis by molgenis.

the class EntityModelWriterTest method testAddStatementsForEntityType.

@Test
public void testAddStatementsForEntityType() {
    Model model = new LinkedHashModel();
    Resource subject = valueFactory.createIRI("http://example.org/subject");
    LabeledResource object = new LabeledResource("http://example.org/object", "object");
    LabeledResource codeSystem = new LabeledResource("ex:object");
    SemanticTag<EntityType, LabeledResource, LabeledResource> tag = new SemanticTag<>("tagId", entityType, Relation.isAssociatedWith, object, codeSystem);
    when(tagService.getTagsForEntity(entityType)).thenReturn(singletonList(tag));
    writer.addStatementsForEntityTags(model, subject, entityType);
    Statement statement = valueFactory.createStatement(subject, TYPE, valueFactory.createIRI("http://example.org/object"));
    assertEquals(newArrayList(model), singletonList(statement));
}