Examples with GenomeBrowserAttributes org.molgenis.genomebrowser.meta.GenomeBrowserAttributes used on opensource projects

Example 6 with GenomeBrowserAttributes

use of org.molgenis.genomebrowser.meta.GenomeBrowserAttributes in project molgenis by molgenis.

the class GenomeBrowserTrackTest method testToTrack.

@Test
public void testToTrack() throws Exception {
    EntityType entity = mock(EntityType.class);
    GenomeBrowserAttributes genomeBrowserAttributes = GenomeBrowserServiceTest.getGenomeBrowserAttributes("postion", "chrom", "normal", "mutant");
    GenomeBrowserTrack reference = GenomeBrowserTrack.create("ref_id", "label", "ref_label", entity, VARIANT, null, GenomeBrowserSettings.MolgenisReferenceMode.NONE, genomeBrowserAttributes, null, null, null, null);
    EntityType molgenisEntityType = when(mock(EntityType.class).getId()).thenReturn("molgenisEntityType").getMock();
    GenomeBrowserTrack track = GenomeBrowserTrack.create("id", "label", "entityLabel", molgenisEntityType, VARIANT, Collections.singletonList(reference), GenomeBrowserSettings.MolgenisReferenceMode.NONE, genomeBrowserAttributes, "alert(\"test\")", "attr 1:attr1,reference attribute:REF,position on genome:POS", null, null);
    String expected = "{\"genome_attrs\":{\"ref\":\"normal\",\"pos\":\"postion\",\"alt\":\"mutant\",\"chr\":\"chrom\"},\"name\":\"label\",\"label_attr\":\"entityLabel\",\"tier_type\":\"molgenis\",\"uri\":\"/api/v2/molgenisEntityType\",\"actions\":\"alert(\\\"test\\\")\",\"track_type\":\"VARIANT\",\"entity\":\"molgenisEntityType\",\"attrs\":[\"attr 1:attr1\",\"reference attribute:REF\",\"position on genome:POS\"]}";
    assertEquals(track.toTrackJson().toString(), expected);
}