Examples with MappingTarget org.molgenis.semanticmapper.mapping.model.MappingTarget used on opensource projects

Example 16 with MappingTarget

use of org.molgenis.semanticmapper.mapping.model.MappingTarget in project molgenis by molgenis.

the class MappingServiceControllerTest method itShouldCreateNewAttributeMappingWhenSavingIfNonePresent.

@Test
public void itShouldCreateNewAttributeMappingWhenSavingIfNonePresent() throws Exception {
    when(mappingService.getMappingProject("asdf")).thenReturn(mappingProject);
    Menu menu = mock(Menu.class);
    when(menuReaderService.getMenu()).thenReturn(menu);
    when(menu.findMenuItemPath(ID)).thenReturn("/menu/main/mappingservice");
    heightAttr = attrMetaFactory.create().setName("height").setDataType(INT);
    hop.addAttribute(heightAttr);
    mockMvc.perform(post(URI + "/saveattributemapping").param("mappingProjectId", "asdf").param("target", "HOP").param("source", "LifeLines").param("targetAttribute", "height").param("algorithm", "$('length').value()").param("algorithmState", "CURATED")).andExpect(redirectedUrl("/menu/main/mappingservice/mappingproject/asdf"));
    MappingProject expected = new MappingProject("hop hop hop", me);
    expected.setIdentifier("asdf");
    MappingTarget mappingTarget = expected.addTarget(hop);
    EntityMapping entityMapping = mappingTarget.addSource(lifeLines);
    AttributeMapping ageMapping = entityMapping.addAttributeMapping("age");
    ageMapping.setAlgorithm("$('dob').age()");
    AttributeMapping heightMapping = entityMapping.addAttributeMapping("height");
    heightMapping.setAlgorithm("$('length').value()");
    heightMapping.setAlgorithmState(AttributeMapping.AlgorithmState.CURATED);
    Mockito.verify(mappingService).updateMappingProject(expected);
}

Example 17 with MappingTarget

use of org.molgenis.semanticmapper.mapping.model.MappingTarget in project molgenis by molgenis.

the class MappingServiceControllerTest method beforeTest.

@BeforeMethod
public void beforeTest() {
    me = mock(User.class);
    when(me.getUsername()).thenReturn("fdlk");
    TestingAuthenticationToken authentication = new TestingAuthenticationToken("fdlk", null);
    authentication.setAuthenticated(true);
    SecurityContextHolder.getContext().setAuthentication(authentication);
    hop = entityTypeFactory.create("HOP");
    ageAttr = attrMetaFactory.create().setName("age").setDataType(INT);
    hop.addAttribute(ageAttr);
    dobAttr = attrMetaFactory.create().setName("dob").setDataType(DATE);
    hop.addAttribute(dobAttr);
    hop.setAbstract(true);
    lifeLines = entityTypeFactory.create("LifeLines");
    mappingProject = new MappingProject("hop hop hop", me);
    mappingProject.setIdentifier("asdf");
    MappingTarget mappingTarget = mappingProject.addTarget(hop);
    EntityMapping entityMapping = mappingTarget.addSource(lifeLines);
    AttributeMapping attributeMapping = entityMapping.addAttributeMapping("age");
    attributeMapping.setAlgorithm("$('dob').age()");
    when(dataService.getMeta()).thenReturn(metaDataService);
    mockMvc = MockMvcBuilders.standaloneSetup(controller).setMessageConverters(gsonHttpMessageConverter, new StringHttpMessageConverter()).build();
}

Example 18 with MappingTarget

use of org.molgenis.semanticmapper.mapping.model.MappingTarget in project molgenis by molgenis.

the class MappingServiceControllerTest method itShouldRemoveEmptyAttributeMappingsWhenSaving.

@Test
public void itShouldRemoveEmptyAttributeMappingsWhenSaving() throws Exception {
    when(mappingService.getMappingProject("asdf")).thenReturn(mappingProject);
    Menu menu = mock(Menu.class);
    when(menuReaderService.getMenu()).thenReturn(menu);
    when(menu.findMenuItemPath(ID)).thenReturn("/menu/main/mappingservice");
    mockMvc.perform(post(URI + "/saveattributemapping").param("mappingProjectId", "asdf").param("target", "HOP").param("source", "LifeLines").param("targetAttribute", "age").param("algorithm", "").param("algorithmState", "CURATED")).andExpect(redirectedUrl("/menu/main/mappingservice/mappingproject/asdf"));
    MappingProject expected = new MappingProject("hop hop hop", me);
    expected.setIdentifier("asdf");
    MappingTarget mappingTarget = expected.addTarget(hop);
    mappingTarget.addSource(lifeLines);
    Mockito.verify(mappingService).updateMappingProject(expected);
}

Example 19 with MappingTarget

use of org.molgenis.semanticmapper.mapping.model.MappingTarget in project molgenis by molgenis.

the class MappingServiceImplTest method createMappingProjectWithMappings.

private MappingProject createMappingProjectWithMappings() {
    MappingProject mappingProject = mappingService.addMappingProject("TestRun", user, hopMetaData.getId());
    MappingTarget target = mappingProject.getMappingTarget(hopMetaData.getId());
    when(mappingProjectRepo.getMappingProject("TestRun")).thenReturn(mappingProject);
    EntityMapping mapping = target.addSource(geneMetaData);
    AttributeMapping idMapping = mapping.addAttributeMapping("identifier");
    idMapping.setAlgorithm("$('id').value()");
    AttributeMapping attrMapping = mapping.addAttributeMapping("height");
    attrMapping.setAlgorithm("$('length').value()");
    return mappingProject;
}

Example 20 with MappingTarget

use of org.molgenis.semanticmapper.mapping.model.MappingTarget in project molgenis by molgenis.

the class MappingServiceImplTest method createMetaWithNullParameters.

@Test
public void createMetaWithNullParameters() {
    MappingTarget mappingTarget = Mockito.mock(MappingTarget.class);
    when(mappingTarget.getTarget()).thenReturn(hopMetaData);
    EntityType targetMetadata = mappingService.createTargetMetadata(mappingTarget, "target id", null, null, null);
    assertEquals(targetMetadata.getId(), "target id");
    assertEquals(targetMetadata.getLabel(), "target id");
    assertEquals(targetMetadata.getPackage().getId(), "base");
    Assert.assertNull(targetMetadata.getAttribute(SOURCE));
}