Examples with ClassPathResource org.nd4j.linalg.io.ClassPathResource used on opensource projects

Example 36 with ClassPathResource

use of org.nd4j.linalg.io.ClassPathResource in project deeplearning4j by deeplearning4j.

the class RecordReaderMultiDataSetIteratorTest method testVariableLengthTS.

@Test
public void testVariableLengthTS() throws Exception {
    //need to manually extract
    for (int i = 0; i < 3; i++) {
        new ClassPathResource(String.format("csvsequence_%d.txt", i)).getTempFileFromArchive();
        new ClassPathResource(String.format("csvsequencelabels_%d.txt", i)).getTempFileFromArchive();
        new ClassPathResource(String.format("csvsequencelabelsShort_%d.txt", i)).getTempFileFromArchive();
    }
    //Set up SequenceRecordReaderDataSetIterators for comparison
    ClassPathResource resource = new ClassPathResource("csvsequence_0.txt");
    String featuresPath = resource.getTempFileFromArchive().getAbsolutePath().replaceAll("0", "%d");
    resource = new ClassPathResource("csvsequencelabelsShort_0.txt");
    String labelsPath = resource.getTempFileFromArchive().getAbsolutePath().replaceAll("0", "%d");
    SequenceRecordReader featureReader = new CSVSequenceRecordReader(1, ",");
    SequenceRecordReader labelReader = new CSVSequenceRecordReader(1, ",");
    featureReader.initialize(new NumberedFileInputSplit(featuresPath, 0, 2));
    labelReader.initialize(new NumberedFileInputSplit(labelsPath, 0, 2));
    SequenceRecordReader featureReader2 = new CSVSequenceRecordReader(1, ",");
    SequenceRecordReader labelReader2 = new CSVSequenceRecordReader(1, ",");
    featureReader2.initialize(new NumberedFileInputSplit(featuresPath, 0, 2));
    labelReader2.initialize(new NumberedFileInputSplit(labelsPath, 0, 2));
    SequenceRecordReaderDataSetIterator iterAlignStart = new SequenceRecordReaderDataSetIterator(featureReader, labelReader, 1, 4, false, SequenceRecordReaderDataSetIterator.AlignmentMode.ALIGN_START);
    SequenceRecordReaderDataSetIterator iterAlignEnd = new SequenceRecordReaderDataSetIterator(featureReader2, labelReader2, 1, 4, false, SequenceRecordReaderDataSetIterator.AlignmentMode.ALIGN_END);
    //Set up
    SequenceRecordReader featureReader3 = new CSVSequenceRecordReader(1, ",");
    SequenceRecordReader labelReader3 = new CSVSequenceRecordReader(1, ",");
    featureReader3.initialize(new NumberedFileInputSplit(featuresPath, 0, 2));
    labelReader3.initialize(new NumberedFileInputSplit(labelsPath, 0, 2));
    SequenceRecordReader featureReader4 = new CSVSequenceRecordReader(1, ",");
    SequenceRecordReader labelReader4 = new CSVSequenceRecordReader(1, ",");
    featureReader4.initialize(new NumberedFileInputSplit(featuresPath, 0, 2));
    labelReader4.initialize(new NumberedFileInputSplit(labelsPath, 0, 2));
    RecordReaderMultiDataSetIterator rrmdsiStart = new RecordReaderMultiDataSetIterator.Builder(1).addSequenceReader("in", featureReader3).addSequenceReader("out", labelReader3).addInput("in").addOutputOneHot("out", 0, 4).sequenceAlignmentMode(RecordReaderMultiDataSetIterator.AlignmentMode.ALIGN_START).build();
    RecordReaderMultiDataSetIterator rrmdsiEnd = new RecordReaderMultiDataSetIterator.Builder(1).addSequenceReader("in", featureReader4).addSequenceReader("out", labelReader4).addInput("in").addOutputOneHot("out", 0, 4).sequenceAlignmentMode(RecordReaderMultiDataSetIterator.AlignmentMode.ALIGN_END).build();
    while (iterAlignStart.hasNext()) {
        DataSet dsStart = iterAlignStart.next();
        DataSet dsEnd = iterAlignEnd.next();
        MultiDataSet mdsStart = rrmdsiStart.next();
        MultiDataSet mdsEnd = rrmdsiEnd.next();
        assertEquals(1, mdsStart.getFeatures().length);
        assertEquals(1, mdsStart.getLabels().length);
        //assertEquals(1, mdsStart.getFeaturesMaskArrays().length); //Features data is always longer -> don't need mask arrays for it
        assertEquals(1, mdsStart.getLabelsMaskArrays().length);
        assertEquals(1, mdsEnd.getFeatures().length);
        assertEquals(1, mdsEnd.getLabels().length);
        //assertEquals(1, mdsEnd.getFeaturesMaskArrays().length);
        assertEquals(1, mdsEnd.getLabelsMaskArrays().length);
        assertEquals(dsStart.getFeatureMatrix(), mdsStart.getFeatures(0));
        assertEquals(dsStart.getLabels(), mdsStart.getLabels(0));
        assertEquals(dsStart.getLabelsMaskArray(), mdsStart.getLabelsMaskArray(0));
        assertEquals(dsEnd.getFeatureMatrix(), mdsEnd.getFeatures(0));
        assertEquals(dsEnd.getLabels(), mdsEnd.getLabels(0));
        assertEquals(dsEnd.getLabelsMaskArray(), mdsEnd.getLabelsMaskArray(0));
    }
    assertFalse(rrmdsiStart.hasNext());
    assertFalse(rrmdsiEnd.hasNext());
}

Example 37 with ClassPathResource

use of org.nd4j.linalg.io.ClassPathResource in project deeplearning4j by deeplearning4j.

the class EvalTest method testEvaluationWithMetaData.

@Test
public void testEvaluationWithMetaData() throws Exception {
    RecordReader csv = new CSVRecordReader();
    csv.initialize(new FileSplit(new ClassPathResource("iris.txt").getTempFileFromArchive()));
    int batchSize = 10;
    int labelIdx = 4;
    int numClasses = 3;
    RecordReaderDataSetIterator rrdsi = new RecordReaderDataSetIterator(csv, batchSize, labelIdx, numClasses);
    NormalizerStandardize ns = new NormalizerStandardize();
    ns.fit(rrdsi);
    rrdsi.setPreProcessor(ns);
    rrdsi.reset();
    Nd4j.getRandom().setSeed(12345);
    MultiLayerConfiguration conf = new NeuralNetConfiguration.Builder().seed(12345).iterations(1).optimizationAlgo(OptimizationAlgorithm.STOCHASTIC_GRADIENT_DESCENT).updater(Updater.SGD).learningRate(0.1).list().layer(0, new OutputLayer.Builder(LossFunctions.LossFunction.MCXENT).activation(Activation.SOFTMAX).nIn(4).nOut(3).build()).pretrain(false).backprop(true).build();
    MultiLayerNetwork net = new MultiLayerNetwork(conf);
    net.init();
    for (int i = 0; i < 4; i++) {
        net.fit(rrdsi);
        rrdsi.reset();
    }
    Evaluation e = new Evaluation();
    //*** New: Enable collection of metadata (stored in the DataSets) ***
    rrdsi.setCollectMetaData(true);
    while (rrdsi.hasNext()) {
        DataSet ds = rrdsi.next();
        //*** New - cross dependencies here make types difficult, usid Object internally in DataSet for this***
        List<RecordMetaData> meta = ds.getExampleMetaData(RecordMetaData.class);
        INDArray out = net.output(ds.getFeatures());
        //*** New - evaluate and also store metadata ***
        e.eval(ds.getLabels(), out, meta);
    }
    System.out.println(e.stats());
    System.out.println("\n\n*** Prediction Errors: ***");
    //*** New - get list of prediction errors from evaluation ***
    List<Prediction> errors = e.getPredictionErrors();
    List<RecordMetaData> metaForErrors = new ArrayList<>();
    for (Prediction p : errors) {
        metaForErrors.add((RecordMetaData) p.getRecordMetaData());
    }
    //*** New - dynamically load a subset of the data, just for prediction errors ***
    DataSet ds = rrdsi.loadFromMetaData(metaForErrors);
    INDArray output = net.output(ds.getFeatures());
    int count = 0;
    for (Prediction t : errors) {
        System.out.println(t + "\t\tRaw Data: " + //*** New - load subset of data from MetaData object (usually batched for efficiency) ***
        csv.loadFromMetaData((RecordMetaData) t.getRecordMetaData()).getRecord() + "\tNormalized: " + ds.getFeatureMatrix().getRow(count) + "\tLabels: " + ds.getLabels().getRow(count) + "\tNetwork predictions: " + output.getRow(count));
        count++;
    }
    int errorCount = errors.size();
    double expAcc = 1.0 - errorCount / 150.0;
    assertEquals(expAcc, e.accuracy(), 1e-5);
    ConfusionMatrix<Integer> confusion = e.getConfusionMatrix();
    int[] actualCounts = new int[3];
    int[] predictedCounts = new int[3];
    for (int i = 0; i < 3; i++) {
        for (int j = 0; j < 3; j++) {
            //(actual,predicted)
            int entry = confusion.getCount(i, j);
            List<Prediction> list = e.getPredictions(i, j);
            assertEquals(entry, list.size());
            actualCounts[i] += entry;
            predictedCounts[j] += entry;
        }
    }
    for (int i = 0; i < 3; i++) {
        List<Prediction> actualClassI = e.getPredictionsByActualClass(i);
        List<Prediction> predictedClassI = e.getPredictionByPredictedClass(i);
        assertEquals(actualCounts[i], actualClassI.size());
        assertEquals(predictedCounts[i], predictedClassI.size());
    }
}

Example 38 with ClassPathResource

use of org.nd4j.linalg.io.ClassPathResource in project deeplearning4j by deeplearning4j.

the class RecordReaderDataSetiteratorTest method testSequenceRecordReader.

@Test
public void testSequenceRecordReader() throws Exception {
    //need to manually extract
    for (int i = 0; i < 3; i++) {
        new ClassPathResource(String.format("csvsequence_%d.txt", i)).getTempFileFromArchive();
        new ClassPathResource(String.format("csvsequencelabels_%d.txt", i)).getTempFileFromArchive();
    }
    ClassPathResource resource = new ClassPathResource("csvsequence_0.txt");
    String featuresPath = resource.getTempFileFromArchive().getAbsolutePath().replaceAll("0", "%d");
    resource = new ClassPathResource("csvsequencelabels_0.txt");
    String labelsPath = resource.getTempFileFromArchive().getAbsolutePath().replaceAll("0", "%d");
    SequenceRecordReader featureReader = new CSVSequenceRecordReader(1, ",");
    SequenceRecordReader labelReader = new CSVSequenceRecordReader(1, ",");
    featureReader.initialize(new NumberedFileInputSplit(featuresPath, 0, 2));
    labelReader.initialize(new NumberedFileInputSplit(labelsPath, 0, 2));
    SequenceRecordReaderDataSetIterator iter = new SequenceRecordReaderDataSetIterator(featureReader, labelReader, 1, 4, false);
    assertEquals(3, iter.inputColumns());
    assertEquals(4, iter.totalOutcomes());
    List<DataSet> dsList = new ArrayList<>();
    while (iter.hasNext()) {
        dsList.add(iter.next());
    }
    //3 files
    assertEquals(3, dsList.size());
    for (int i = 0; i < 3; i++) {
        DataSet ds = dsList.get(i);
        INDArray features = ds.getFeatureMatrix();
        INDArray labels = ds.getLabels();
        //1 example in mini-batch
        assertEquals(1, features.size(0));
        assertEquals(1, labels.size(0));
        //3 values per line/time step
        assertEquals(3, features.size(1));
        //1 value per line, but 4 possible values -> one-hot vector
        assertEquals(4, labels.size(1));
        //sequence length = 4
        assertEquals(4, features.size(2));
        assertEquals(4, labels.size(2));
    }
    //Check features vs. expected:
    INDArray expF0 = Nd4j.create(1, 3, 4);
    expF0.tensorAlongDimension(0, 1).assign(Nd4j.create(new double[] { 0, 1, 2 }));
    expF0.tensorAlongDimension(1, 1).assign(Nd4j.create(new double[] { 10, 11, 12 }));
    expF0.tensorAlongDimension(2, 1).assign(Nd4j.create(new double[] { 20, 21, 22 }));
    expF0.tensorAlongDimension(3, 1).assign(Nd4j.create(new double[] { 30, 31, 32 }));
    assertEquals(dsList.get(0).getFeatureMatrix(), expF0);
    INDArray expF1 = Nd4j.create(1, 3, 4);
    expF1.tensorAlongDimension(0, 1).assign(Nd4j.create(new double[] { 100, 101, 102 }));
    expF1.tensorAlongDimension(1, 1).assign(Nd4j.create(new double[] { 110, 111, 112 }));
    expF1.tensorAlongDimension(2, 1).assign(Nd4j.create(new double[] { 120, 121, 122 }));
    expF1.tensorAlongDimension(3, 1).assign(Nd4j.create(new double[] { 130, 131, 132 }));
    assertEquals(dsList.get(1).getFeatureMatrix(), expF1);
    INDArray expF2 = Nd4j.create(1, 3, 4);
    expF2.tensorAlongDimension(0, 1).assign(Nd4j.create(new double[] { 200, 201, 202 }));
    expF2.tensorAlongDimension(1, 1).assign(Nd4j.create(new double[] { 210, 211, 212 }));
    expF2.tensorAlongDimension(2, 1).assign(Nd4j.create(new double[] { 220, 221, 222 }));
    expF2.tensorAlongDimension(3, 1).assign(Nd4j.create(new double[] { 230, 231, 232 }));
    assertEquals(dsList.get(2).getFeatureMatrix(), expF2);
    //Check labels vs. expected:
    INDArray expL0 = Nd4j.create(1, 4, 4);
    expL0.tensorAlongDimension(0, 1).assign(Nd4j.create(new double[] { 1, 0, 0, 0 }));
    expL0.tensorAlongDimension(1, 1).assign(Nd4j.create(new double[] { 0, 1, 0, 0 }));
    expL0.tensorAlongDimension(2, 1).assign(Nd4j.create(new double[] { 0, 0, 1, 0 }));
    expL0.tensorAlongDimension(3, 1).assign(Nd4j.create(new double[] { 0, 0, 0, 1 }));
    assertEquals(dsList.get(0).getLabels(), expL0);
    INDArray expL1 = Nd4j.create(1, 4, 4);
    expL1.tensorAlongDimension(0, 1).assign(Nd4j.create(new double[] { 0, 0, 0, 1 }));
    expL1.tensorAlongDimension(1, 1).assign(Nd4j.create(new double[] { 0, 0, 1, 0 }));
    expL1.tensorAlongDimension(2, 1).assign(Nd4j.create(new double[] { 0, 1, 0, 0 }));
    expL1.tensorAlongDimension(3, 1).assign(Nd4j.create(new double[] { 1, 0, 0, 0 }));
    assertEquals(dsList.get(1).getLabels(), expL1);
    INDArray expL2 = Nd4j.create(1, 4, 4);
    expL2.tensorAlongDimension(0, 1).assign(Nd4j.create(new double[] { 0, 1, 0, 0 }));
    expL2.tensorAlongDimension(1, 1).assign(Nd4j.create(new double[] { 1, 0, 0, 0 }));
    expL2.tensorAlongDimension(2, 1).assign(Nd4j.create(new double[] { 0, 0, 0, 1 }));
    expL2.tensorAlongDimension(3, 1).assign(Nd4j.create(new double[] { 0, 0, 1, 0 }));
    assertEquals(dsList.get(2).getLabels(), expL2);
}

Example 39 with ClassPathResource

use of org.nd4j.linalg.io.ClassPathResource in project deeplearning4j by deeplearning4j.

the class RecordReaderDataSetiteratorTest method testSequenceRecordReaderSingleReader.

@Test
public void testSequenceRecordReaderSingleReader() throws Exception {
    //need to manually extract
    for (int i = 0; i < 3; i++) {
        new ClassPathResource(String.format("csvsequenceSingle_%d.txt", i)).getTempFileFromArchive();
    }
    ClassPathResource resource = new ClassPathResource("csvsequenceSingle_0.txt");
    String path = resource.getTempFileFromArchive().getAbsolutePath().replaceAll("0", "%d");
    SequenceRecordReader reader = new CSVSequenceRecordReader(1, ",");
    reader.initialize(new NumberedFileInputSplit(path, 0, 2));
    SequenceRecordReaderDataSetIterator iteratorClassification = new SequenceRecordReaderDataSetIterator(reader, 1, 3, 0, false);
    SequenceRecordReader reader2 = new CSVSequenceRecordReader(1, ",");
    reader2.initialize(new NumberedFileInputSplit(path, 0, 2));
    SequenceRecordReaderDataSetIterator iteratorRegression = new SequenceRecordReaderDataSetIterator(reader2, 1, 3, 0, true);
    INDArray expF0 = Nd4j.create(1, 2, 4);
    expF0.tensorAlongDimension(0, 1).assign(Nd4j.create(new double[] { 1, 2 }));
    expF0.tensorAlongDimension(1, 1).assign(Nd4j.create(new double[] { 11, 12 }));
    expF0.tensorAlongDimension(2, 1).assign(Nd4j.create(new double[] { 21, 22 }));
    expF0.tensorAlongDimension(3, 1).assign(Nd4j.create(new double[] { 31, 32 }));
    INDArray expF1 = Nd4j.create(1, 2, 4);
    expF1.tensorAlongDimension(0, 1).assign(Nd4j.create(new double[] { 101, 102 }));
    expF1.tensorAlongDimension(1, 1).assign(Nd4j.create(new double[] { 111, 112 }));
    expF1.tensorAlongDimension(2, 1).assign(Nd4j.create(new double[] { 121, 122 }));
    expF1.tensorAlongDimension(3, 1).assign(Nd4j.create(new double[] { 131, 132 }));
    INDArray expF2 = Nd4j.create(1, 2, 4);
    expF2.tensorAlongDimension(0, 1).assign(Nd4j.create(new double[] { 201, 202 }));
    expF2.tensorAlongDimension(1, 1).assign(Nd4j.create(new double[] { 211, 212 }));
    expF2.tensorAlongDimension(2, 1).assign(Nd4j.create(new double[] { 221, 222 }));
    expF2.tensorAlongDimension(3, 1).assign(Nd4j.create(new double[] { 231, 232 }));
    INDArray[] expF = new INDArray[] { expF0, expF1, expF2 };
    //Expected out for classification:
    INDArray expOut0 = Nd4j.create(1, 3, 4);
    expOut0.tensorAlongDimension(0, 1).assign(Nd4j.create(new double[] { 1, 0, 0 }));
    expOut0.tensorAlongDimension(1, 1).assign(Nd4j.create(new double[] { 0, 1, 0 }));
    expOut0.tensorAlongDimension(2, 1).assign(Nd4j.create(new double[] { 0, 0, 1 }));
    expOut0.tensorAlongDimension(3, 1).assign(Nd4j.create(new double[] { 1, 0, 0 }));
    INDArray expOut1 = Nd4j.create(1, 3, 4);
    expOut1.tensorAlongDimension(0, 1).assign(Nd4j.create(new double[] { 0, 1, 0 }));
    expOut1.tensorAlongDimension(1, 1).assign(Nd4j.create(new double[] { 0, 0, 1 }));
    expOut1.tensorAlongDimension(2, 1).assign(Nd4j.create(new double[] { 1, 0, 0 }));
    expOut1.tensorAlongDimension(3, 1).assign(Nd4j.create(new double[] { 0, 0, 1 }));
    INDArray expOut2 = Nd4j.create(1, 3, 4);
    expOut2.tensorAlongDimension(0, 1).assign(Nd4j.create(new double[] { 0, 1, 0 }));
    expOut2.tensorAlongDimension(1, 1).assign(Nd4j.create(new double[] { 1, 0, 0 }));
    expOut2.tensorAlongDimension(2, 1).assign(Nd4j.create(new double[] { 0, 1, 0 }));
    expOut2.tensorAlongDimension(3, 1).assign(Nd4j.create(new double[] { 0, 0, 1 }));
    INDArray[] expOutClassification = new INDArray[] { expOut0, expOut1, expOut2 };
    //Expected out for regression:
    INDArray expOutR0 = Nd4j.create(1, 1, 4);
    expOutR0.tensorAlongDimension(0, 1).assign(Nd4j.create(new double[] { 0 }));
    expOutR0.tensorAlongDimension(1, 1).assign(Nd4j.create(new double[] { 1 }));
    expOutR0.tensorAlongDimension(2, 1).assign(Nd4j.create(new double[] { 2 }));
    expOutR0.tensorAlongDimension(3, 1).assign(Nd4j.create(new double[] { 0 }));
    INDArray expOutR1 = Nd4j.create(1, 1, 4);
    expOutR1.tensorAlongDimension(0, 1).assign(Nd4j.create(new double[] { 1 }));
    expOutR1.tensorAlongDimension(1, 1).assign(Nd4j.create(new double[] { 2 }));
    expOutR1.tensorAlongDimension(2, 1).assign(Nd4j.create(new double[] { 0 }));
    expOutR1.tensorAlongDimension(3, 1).assign(Nd4j.create(new double[] { 2 }));
    INDArray expOutR2 = Nd4j.create(1, 1, 4);
    expOutR2.tensorAlongDimension(0, 1).assign(Nd4j.create(new double[] { 1 }));
    expOutR2.tensorAlongDimension(1, 1).assign(Nd4j.create(new double[] { 0 }));
    expOutR2.tensorAlongDimension(2, 1).assign(Nd4j.create(new double[] { 1 }));
    expOutR2.tensorAlongDimension(3, 1).assign(Nd4j.create(new double[] { 2 }));
    INDArray[] expOutRegression = new INDArray[] { expOutR0, expOutR1, expOutR2 };
    int countC = 0;
    while (iteratorClassification.hasNext()) {
        DataSet ds = iteratorClassification.next();
        INDArray f = ds.getFeatures();
        INDArray l = ds.getLabels();
        assertNull(ds.getFeaturesMaskArray());
        assertNull(ds.getLabelsMaskArray());
        assertArrayEquals(new int[] { 1, 2, 4 }, f.shape());
        //One-hot representation
        assertArrayEquals(new int[] { 1, 3, 4 }, l.shape());
        assertEquals(expF[countC], f);
        assertEquals(expOutClassification[countC++], l);
    }
    assertEquals(3, countC);
    assertEquals(3, iteratorClassification.totalOutcomes());
    int countF = 0;
    while (iteratorRegression.hasNext()) {
        DataSet ds = iteratorRegression.next();
        INDArray f = ds.getFeatures();
        INDArray l = ds.getLabels();
        assertNull(ds.getFeaturesMaskArray());
        assertNull(ds.getLabelsMaskArray());
        assertArrayEquals(new int[] { 1, 2, 4 }, f.shape());
        //Regression (single output)
        assertArrayEquals(new int[] { 1, 1, 4 }, l.shape());
        assertEquals(expF[countF], f);
        assertEquals(expOutRegression[countF++], l);
    }
    assertEquals(3, countF);
    assertEquals(1, iteratorRegression.totalOutcomes());
}

Example 40 with ClassPathResource

use of org.nd4j.linalg.io.ClassPathResource in project deeplearning4j by deeplearning4j.

the class RecordReaderDataSetiteratorTest method testSequenceRecordReaderSingleReaderWithEmptySequenceThrows.

@Test(expected = ZeroLengthSequenceException.class)
public void testSequenceRecordReaderSingleReaderWithEmptySequenceThrows() throws Exception {
    SequenceRecordReader reader = new CSVSequenceRecordReader(1, ",");
    reader.initialize(new FileSplit(new ClassPathResource("empty.txt").getTempFileFromArchive()));
    new SequenceRecordReaderDataSetIterator(reader, 1, -1, 1, true).next();
}