Examples with CvTerm org.nextprot.api.core.domain.CvTerm used on opensource projects

Example 16 with CvTerm

use of org.nextprot.api.core.domain.CvTerm in project nextprot-api by calipho-sib.

the class ConsistencyResourceTest method shouldFindAllTerms.

@Test
public void shouldFindAllTerms() {
    boolean missingTerms = false;
    List<String> terms = statementDao.findAllDistinctValuesforField(StatementField.ANNOT_CV_TERM_ACCESSION);
    System.out.println("Found " + terms.size() + " distinct terms");
    for (String t : terms) {
        if (t != null) {
            CvTerm term = terminologyService.findCvTermByAccession(t);
            if (term == null) {
                System.err.println("Can t find term " + t);
                missingTerms = true;
            }
        }
    }
    ;
    if (missingTerms)
        Assert.fail();
}

Example 17 with CvTerm

use of org.nextprot.api.core.domain.CvTerm in project nextprot-api by calipho-sib.

the class TerminologyServiceTest method shouldReturnAUniprotDomain.

@Test
public void shouldReturnAUniprotDomain() {
    CvTerm term = this.terminologyService.findCvTermByAccession("DO-00031");
    assertEquals("NextprotDomainCv", term.getOntology());
}

Example 18 with CvTerm

use of org.nextprot.api.core.domain.CvTerm in project nextprot-api by calipho-sib.

the class TerminologyServiceTest method shouldReturnTheHierarchy.

@Test
public void shouldReturnTheHierarchy() {
    CvTerm term = this.terminologyService.findCvTermByAccession("KW-0906");
    // Nuclear pore complex has 3 parents
    assertEquals(3, term.getAncestorAccession().size());
}

Example 19 with CvTerm

use of org.nextprot.api.core.domain.CvTerm in project nextprot-api by calipho-sib.

the class TerminologyServiceTest method shouldReturnACellosaurusTerm.

@Test
public void shouldReturnACellosaurusTerm() {
    CvTerm term = this.terminologyService.findCvTermByAccession("CVCL_J530");
    // System.out.println(term.toString());
    assertEquals("NextprotCellosaurusCv", term.getOntology());
    assertEquals(2, term.getXrefs().size());
}

Example 20 with CvTerm

use of org.nextprot.api.core.domain.CvTerm in project nextprot-api by calipho-sib.

the class TerminologyServiceTest method shouldReturnAllTerms.

@Test
public void shouldReturnAllTerms() {
    int sameascnt = 0, refcnt = 0, maxref = 0;
    List<CvTerm> terms = this.terminologyService.findAllCVTerms();
    assertTrue(terms.size() > 145000);
    for (CvTerm term : terms) {
        List<String> sameas = term.getSameAs();
        if (sameas != null) {
            sameascnt++;
            refcnt = sameas.size();
            if (refcnt > maxref)
                maxref = refcnt;
        }
    }
    assertTrue(sameascnt > 44000);
    assertEquals(64, maxref);
}