Examples with AnnotationSimilarityPredicate org.nextprot.api.core.service.annotation.merge.AnnotationSimilarityPredicate used on opensource projects

Example 6 with AnnotationSimilarityPredicate

use of org.nextprot.api.core.service.annotation.merge.AnnotationSimilarityPredicate in project nextprot-api by calipho-sib.

the class AnnotationFinderTest method shouldFindOneAnnotIfMultipleMatches.

@Test
public void shouldFindOneAnnotIfMultipleMatches() throws Exception {
    AnnotationFinder finder = new AnnotationFinder() {

        @Override
        protected Optional<AnnotationSimilarityPredicate> newPredicate(Annotation annotation) {
            return Optional.of(newApiCatCriteria());
        }
    };
    Annotation annot = new Annotation();
    annot.setAnnotationName("joe");
    annot.setAnnotationCategory(AnnotationCategory.VARIANT);
    Optional<Annotation> optAnnotation = finder.find(mockAnnotation(AnnotationCategory.VARIANT), Arrays.asList(annot, mockAnnotation(AnnotationCategory.VARIANT)));
    Assert.assertTrue(optAnnotation.isPresent());
    Assert.assertEquals(AnnotationCategory.VARIANT, optAnnotation.get().getAPICategory());
    Assert.assertEquals("joe", optAnnotation.get().getAnnotationName());
}

Example 7 with AnnotationSimilarityPredicate

use of org.nextprot.api.core.service.annotation.merge.AnnotationSimilarityPredicate in project nextprot-api by calipho-sib.

the class ObjectAnnotationSimilarityPredicateTest method shouldBeDifferentBasedOnBioObjectEquals.

@Test
public void shouldBeDifferentBasedOnBioObjectEquals() throws Exception {
    AnnotationSimilarityPredicate predicateBasedOnBioObjectEquals = new ObjectSimilarityPredicate(Annotation::getBioObject);
    Assert.assertFalse(predicateBasedOnBioObjectEquals.isSimilar(mockAnnotationWithBioObject("toto", BioObject.BioType.CHEMICAL), mockAnnotationWithBioObject("toto", BioObject.BioType.GROUP)));
}

Example 8 with AnnotationSimilarityPredicate

use of org.nextprot.api.core.service.annotation.merge.AnnotationSimilarityPredicate in project nextprot-api by calipho-sib.

the class ObjectAnnotationSimilarityPredicateTest method shouldBeSimilarBasedOnBioObjectAccessionEquals.

@Test
public void shouldBeSimilarBasedOnBioObjectAccessionEquals() throws Exception {
    AnnotationSimilarityPredicate predicateBasedOnBioObjectAccessionEquals = new ObjectSimilarityPredicate(Annotation::getBioObject, (o1, o2) -> Objects.equals(((BioObject) o1).getAccession(), ((BioObject) o2).getAccession()));
    Assert.assertTrue(predicateBasedOnBioObjectAccessionEquals.isSimilar(mockAnnotationWithBioObject("toto", BioObject.BioType.CHEMICAL), mockAnnotationWithBioObject("toto", BioObject.BioType.GROUP)));
}