Examples with DataAccessAmendment org.obiba.mica.access.domain.DataAccessAmendment used on opensource projects

Example 6 with DataAccessAmendment

use of org.obiba.mica.access.domain.DataAccessAmendment in project mica2 by obiba.

the class CsvReportGenerator method writeEachDataAccessRequest.

private void writeEachDataAccessRequest(CSVWriter writer) {
    writer.writeNext(toArray(extractTranslatedField(darSchema, GENERIC_TANSLATION_PREFIX + ".detailedOverview")));
    Set<String> tableKeys = darSchema.read("table", Map.class).keySet();
    dataAccessRequestDtos.entrySet().forEach(entry -> {
        writer.writeNext(tableKeys.stream().map(key -> extractTranslatedField(darSchema, "table.['" + key + "']")).toArray(String[]::new));
        DataAccessRequest dataAccessRequestDto = entry.getKey();
        DocumentContext dataAccessRequestContent = JsonPath.parse(dataAccessRequestDto.getContent());
        addGenericVariablesInDocumentContext(dataAccessRequestDto, darSchema, dataAccessRequestContent);
        writer.writeNext(tableKeys.stream().map(key -> extractValueFromDataAccessRequest(dataAccessRequestContent, key)).toArray(String[]::new));
        writer.writeNext(toArray(""));
        List<DataAccessAmendment> amendments = entry.getValue();
        if (amendments != null && !amendments.isEmpty()) {
            writeEachAmendment(amendments, writer);
        }
        writer.writeNext(toArray(""));
        writer.writeNext(toArray(""));
        writer.writeNext(toArray(""));
    });
}

Example 7 with DataAccessAmendment

use of org.obiba.mica.access.domain.DataAccessAmendment in project mica2 by obiba.

the class CsvReportGenerator method writeEachAmendment.

private void writeEachAmendment(List<DataAccessAmendment> amendments, CSVWriter writer) {
    Set<String> tableKeys = amdSchema.read("table", Map.class).keySet();
    writer.writeNext(tableKeys.stream().map(key -> extractTranslatedField(amdSchema, "table.['" + key + "']")).toArray(String[]::new));
    for (DataAccessAmendment amendment : amendments) {
        DocumentContext amendmentContent = JsonPath.parse(amendment.getContent());
        addGenericVariablesInDocumentContext(amendment, amdSchema, amendmentContent);
        writer.writeNext(tableKeys.stream().map(key -> extractValueFromDataAccessRequest(amendmentContent, key)).toArray(String[]::new));
    }
}

Example 8 with DataAccessAmendment

use of org.obiba.mica.access.domain.DataAccessAmendment in project mica2 by obiba.

the class DataAccessAmendmentResource method deleteVariablesSet.

@DELETE
@Path("/variables")
public Response deleteVariablesSet() {
    subjectAclService.checkPermission(getResourcePath(), "EDIT", id);
    DataAccessAmendment amendment = getService().findById(id);
    if (amendment.hasVariablesSet())
        variableSetService.delete(amendment.getVariablesSet());
    return Response.noContent().build();
}

Example 9 with DataAccessAmendment

use of org.obiba.mica.access.domain.DataAccessAmendment in project mica2 by obiba.

the class DataAccessAmendmentResource method setVariablesSet.

@PUT
@Path("/variables")
public Response setVariablesSet() {
    subjectAclService.checkPermission(getResourcePath(), "EDIT", id);
    DataAccessAmendment amendment = getService().findById(id);
    amendment.setVariablesSet(createOrUpdateVariablesSet(amendment));
    dataAccessAmendmentService.save(amendment);
    return Response.noContent().build();
}

Example 10 with DataAccessAmendment

use of org.obiba.mica.access.domain.DataAccessAmendment in project mica2 by obiba.

the class DataAccessAmendmentResource method getAmendment.

@GET
@Timed
public Mica.DataAccessRequestDto getAmendment() {
    subjectAclService.checkPermission(getParentResourcePath(), "VIEW", parentId);
    DataAccessAmendment amendment = dataAccessAmendmentService.findById(id);
    return dtos.asAmendmentDto(amendment);
}