Examples with DocumentSet org.obiba.mica.core.domain.DocumentSet used on opensource projects

Example 31 with DocumentSet

use of org.obiba.mica.core.domain.DocumentSet in project mica2 by obiba.

the class CartController method getNamed.

@GetMapping("/list/{id:.+}")
public ModelAndView getNamed(@PathVariable String id) {
    MicaConfig config = micaConfigService.getConfig();
    if (!config.isCartEnabled()) {
        return new ModelAndView("redirect:/");
    }
    Subject subject = SecurityUtils.getSubject();
    if (subject.isAuthenticated()) {
        DocumentSet documentSet = variableSetService.get(id);
        if (!subjectAclService.isCurrentUser(documentSet.getUsername()) && !subjectAclService.isAdministrator() && !subjectAclService.isDataAccessOfficer())
            throw new ForbiddenException();
        Map<String, Object> params = newParameters();
        params.put("set", documentSet);
        return new ModelAndView("list", params);
    } else {
        return new ModelAndView("redirect:/signin?redirect=" + micaConfigService.getContextPath() + "/list/" + id);
    }
}

Example 32 with DocumentSet

use of org.obiba.mica.core.domain.DocumentSet in project mica2 by obiba.

the class CartController method lists.

@GetMapping("/lists")
public ModelAndView lists() {
    MicaConfig config = micaConfigService.getConfig();
    if (!config.isCartEnabled()) {
        return new ModelAndView("redirect:/");
    }
    Subject subject = SecurityUtils.getSubject();
    if (subject.isAuthenticated()) {
        Optional<DocumentSet> tentative = variableSetService.getAllCurrentUser().stream().filter(DocumentSet::hasName).findFirst();
        return tentative.map(documentSet -> new ModelAndView("redirect:/list/" + documentSet.getId())).orElseGet(() -> new ModelAndView("redirect:/search"));
    } else {
        return new ModelAndView("redirect:signin?redirect=" + micaConfigService.getContextPath() + "/lists");
    }
}

Example 33 with DocumentSet

use of org.obiba.mica.core.domain.DocumentSet in project mica2 by obiba.

the class PublishedDatasetVariablesSetsResource method compose.

@POST
@Path("operations")
public Response compose(@Context UriInfo uriInfo, @QueryParam("s1") String set1, @QueryParam("s2") String set2, @QueryParam("s3") String set3) {
    if (!subjectAclService.hasMicaRole())
        throw new AuthorizationException();
    List<DocumentSet> sets = Lists.newArrayList();
    sets.add(variableSetService.get(set1));
    sets.add(variableSetService.get(set2));
    if (!Strings.isNullOrEmpty(set3))
        sets.add(variableSetService.get(set3));
    SetOperation setOperation = variableSetOperationService.create(sets);
    return Response.created(uriInfo.getBaseUriBuilder().segment("variables", "sets", "operation", setOperation.getId()).build()).build();
}

Example 34 with DocumentSet

use of org.obiba.mica.core.domain.DocumentSet in project mica2 by obiba.

the class PublishedDatasetVariablesSetResource method importQueryVariables.

@POST
@Path("/documents/_rql")
public Response importQueryVariables(@FormParam("query") String query) throws IOException {
    DocumentSet set = variableSetService.get(id);
    if (Strings.isNullOrEmpty(query))
        return Response.ok().entity(dtos.asDto(set)).build();
    MicaSearch.JoinQueryResultDto result = joinQueryExecutor.query(QueryType.VARIABLE, searcher.makeJoinQuery(query));
    if (result.hasVariableResultDto() && result.getVariableResultDto().getTotalHits() > 0) {
        List<String> ids = result.getVariableResultDto().getExtension(MicaSearch.DatasetVariableResultDto.result).getSummariesList().stream().map(Mica.DatasetVariableResolverDto::getId).collect(Collectors.toList());
        variableSetService.addIdentifiers(id, ids);
        set = variableSetService.get(id);
    }
    return Response.ok().entity(dtos.asDto(set)).build();
}

Example 35 with DocumentSet

use of org.obiba.mica.core.domain.DocumentSet in project mica2 by obiba.

the class PublishedDatasetVariablesSetResource method exportVariables.

@GET
@Path("/documents/_export")
@Produces(MediaType.TEXT_PLAIN)
public Response exportVariables() {
    DocumentSet documentSet = variableSetService.get(id);
    StreamingOutput stream = os -> {
        documentSet.getIdentifiers().forEach(id -> {
            try {
                os.write((id + "\n").getBytes());
            } catch (IOException e) {
            // ignore
            }
        });
        os.flush();
    };
    return Response.ok(stream).header("Content-Disposition", String.format("attachment; filename=\"%s-variables.txt\"", id)).build();
}