Example 16 with StudyDataset
use of org.obiba.mica.dataset.domain.StudyDataset in project mica2 by obiba.
the class PublishedCollectedDatasetVariableResource method getContingencyDto.
private Mica.DatasetVariableContingencyDto getContingencyDto(DatasetVariable var, DatasetVariable crossVar) {
StudyDataset dataset = getDataset(StudyDataset.class, datasetId);
StudyTable studyTable = dataset.getSafeStudyTable();
try {
return dtos.asContingencyDto(studyTable, var, crossVar, datasetService.getContingencyTable(dataset, var, crossVar)).build();
} catch (Exception e) {
log.warn("Unable to retrieve contingency table: " + e.getMessage(), e);
return dtos.asContingencyDto(studyTable, var, crossVar, null).build();
}
}
Also used :
StudyTable(org.obiba.mica.core.domain.StudyTable)
StudyDataset(org.obiba.mica.dataset.domain.StudyDataset)
BadRequestException(javax.ws.rs.BadRequestException)
IOException(java.io.IOException)
Aggregations
StudyDataset (org.obiba.mica.dataset.domain.StudyDataset)16
StudyTable (org.obiba.mica.core.domain.StudyTable)4
IOException (java.io.IOException)3
Dataset (org.obiba.mica.dataset.domain.Dataset)3
DatasetVariable (org.obiba.mica.dataset.domain.DatasetVariable)3
DatasetUpdatedEvent (org.obiba.mica.dataset.event.DatasetUpdatedEvent)3
Timed (com.codahale.metrics.annotation.Timed)2
Strings (com.google.common.base.Strings)2
Lists (com.google.common.collect.Lists)2
List (java.util.List)2
Collectors (java.util.stream.Collectors)2
Inject (javax.inject.Inject)2
NotNull (javax.validation.constraints.NotNull)2
BadRequestException (javax.ws.rs.BadRequestException)2
Path (javax.ws.rs.Path)2
DateTime (org.joda.time.DateTime)2
NoSuchVariableException (org.obiba.magma.NoSuchVariableException)2
HarmonizationDataset (org.obiba.mica.dataset.domain.HarmonizationDataset)2
StudyDatasetState (org.obiba.mica.dataset.domain.StudyDatasetState)2
DatasetDeletedEvent (org.obiba.mica.dataset.event.DatasetDeletedEvent)2
