Examples with ConceptClass org.openmrs.ConceptClass used on opensource projects

Example 26 with ConceptClass

use of org.openmrs.ConceptClass in project openmrs-core by openmrs.

the class HibernateConceptDAOTest method isConceptNameDuplicate_shouldNotFailIfConceptDoesNotHaveADefaultNameForLocale.

// TRUNK-4967
@Test
public void isConceptNameDuplicate_shouldNotFailIfConceptDoesNotHaveADefaultNameForLocale() {
    // given
    ConceptClass diagnosis = dao.getConceptClasses("Diagnosis").get(0);
    ConceptDatatype na = dao.getConceptDatatypeByName("N/A");
    Concept tuberculosis = new Concept();
    tuberculosis.addName(new ConceptName("Tuberculosis", Locale.US));
    tuberculosis.setDatatype(na);
    tuberculosis.setConceptClass(diagnosis);
    dao.saveConcept(tuberculosis);
    ConceptName shortName = new ConceptName("TB", Locale.FRANCE);
    shortName.setConceptNameType(ConceptNameType.SHORT);
    tuberculosis.addName(shortName);
    // when
    boolean duplicate = dao.isConceptNameDuplicate(shortName);
    // then
    // no NPE exception thrown
    assertThat(duplicate, is(false));
}

Example 27 with ConceptClass

use of org.openmrs.ConceptClass in project openmrs-module-coreapps by openmrs.

the class ParserEncounterIntoSimpleObjectsTest method testParsingSimpleObs.

@Test
public void testParsingSimpleObs() throws Exception {
    ConceptDatatype textDatatype = conceptService.getConceptDatatypeByName("Text");
    ConceptClass misc = conceptService.getConceptClassByName("Misc");
    // intentionally the same as what will result from capitalizeFirstLetter(consultNote)
    String consultNote = "Consult note";
    String valueText = "Patient is here for blah blah blah.";
    Concept consultComments = new ConceptBuilder(conceptService, textDatatype, misc).addName(consultNote).get();
    encounter.addObs(new ObsBuilder().setConcept(consultComments).setValue(valueText).get());
    ParsedObs parsed = parser.parseObservations(Locale.ENGLISH);
    assertThat(parsed.getDiagnoses().size(), is(0));
    assertThat(parsed.getDispositions().size(), is(0));
    assertThat(parsed.getObs().size(), is(1));
    assertThat(path(parsed.getObs(), 0, "question"), is((Object) consultNote));
    assertThat(path(parsed.getObs(), 0, "answer"), is((Object) valueText));
}

Example 28 with ConceptClass

use of org.openmrs.ConceptClass in project openmrs-module-coreapps by openmrs.

the class ParserEncounterIntoSimpleObjectsTest method testParsingObsWithLocationAnswer.

@Test
public void testParsingObsWithLocationAnswer() throws Exception {
    ConceptDatatype textDatatype = conceptService.getConceptDatatypeByName("Text");
    ConceptClass misc = conceptService.getConceptClassByName("Misc");
    Location xanadu = new Location();
    xanadu.setName("Xanadu");
    when(locationService.getLocation(2)).thenReturn(xanadu);
    Concept someLocation = new ConceptBuilder(conceptService, textDatatype, misc).addName("Some location").get();
    encounter.addObs(new ObsBuilder().setConcept(someLocation).setValue("2").setComment("org.openmrs.Location").get());
    ParsedObs parsed = parser.parseObservations(Locale.ENGLISH);
    ;
    assertThat(parsed.getObs().size(), is(1));
    assertThat(path(parsed.getObs(), 0, "question"), is((Object) "Some location"));
    assertThat(path(parsed.getObs(), 0, "answer"), is((Object) "Xanadu"));
}

Example 29 with ConceptClass

use of org.openmrs.ConceptClass in project openmrs-module-coreapps by openmrs.

the class EncounterDispositionTagHandlerComponentTest method testFormOnlyShowsDispositionsInDescriptor.

@Test
public void testFormOnlyShowsDispositionsInDescriptor() throws Exception {
    ConceptClass misc = conceptService.getConceptClassByName("Misc");
    ConceptDatatype naDatatype = conceptService.getConceptDatatypeByName("N/A");
    Concept dispositionConcept = dispositionService.getDispositionDescriptor().getDispositionConcept();
    dispositionConcept.addAnswer(new ConceptAnswer(new ConceptBuilder(conceptService, naDatatype, misc).addName("Should not be in option list").saveAndGet()));
    new RegressionTestHelper() {

        @Override
        public void testBlankFormHtml(String html) {
            assertThat(html, containsString("disposition.admission"));
            assertThat(html, containsString("disposition.transfer"));
            assertThat(html, containsString("disposition.discharge"));
            assertThat(html, not(containsString("Should not be in option list")));
        }

        @Override
        public String getXmlDatasetPath() {
            return "";
        }

        @Override
        public String getFormName() {
            return "encounterDispositionSimpleForm";
        }

        @Override
        public Map<String, Object> getFormEntrySessionAttributes() {
            Map<String, Object> attributes = new HashMap<String, Object>();
            attributes.put("uiUtils", new TestUiUtils());
            return attributes;
        }

        @Override
        public String[] widgetLabels() {
            return new String[] { "Date:", "Location:", "Provider:", "Disposition:", "Encounter Type:" };
        }
    }.run();
}

Example 30 with ConceptClass

use of org.openmrs.ConceptClass in project openmrs-module-pihcore by PIH.

the class FamilyHistoryRelativeCheckboxesTagHandlerTest method setupConcepts.

private void setupConcepts() throws Exception {
    // copied from some pihcore concept setup, but tweaked to work with standardTestDataset.xml
    ConceptDatatype coded = MetadataUtils.existing(ConceptDatatype.class, CoreConceptMetadataBundle.ConceptDatatypes.CODED);
    ConceptDatatype text = MetadataUtils.existing(ConceptDatatype.class, CoreConceptMetadataBundle.ConceptDatatypes.TEXT);
    ConceptDatatype notApplicable = MetadataUtils.existing(ConceptDatatype.class, CoreConceptMetadataBundle.ConceptDatatypes.N_A);
    ConceptClass diagnosis = MetadataUtils.existing(ConceptClass.class, "938834bf-a745-4dbd-b611-f06a9a5a3060");
    ConceptClass question = MetadataUtils.existing(ConceptClass.class, "a82ef63c-e4e4-48d6-988a-fdd74d7541a7");
    ConceptClass misc = MetadataUtils.existing(ConceptClass.class, "ecdee8a7-d741-4fe7-8e01-f79cacbe97bc");
    ConceptMapType sameAs = MetadataUtils.existing(ConceptMapType.class, CoreConceptMetadataBundle.ConceptMapTypes.SAME_AS);
    // standardTestDataset actually has "is-a" instead of narrower than. Hopefully this works for our test
    ConceptMapType narrowerThan = MetadataUtils.existing(ConceptMapType.class, "1ce7a784-7d8f-11e1-909d-c80aa9edcf4e");
    ConceptSource ciel = conceptSource("CIEL", "Columbia International eHealth Laboratory concept ID", null, CoreConceptMetadataBundle.ConceptSources.CIEL);
    conceptService.saveConceptSource(ciel);
    // these are in standardTestDataset.xml
    Concept no = conceptService.getConcept(8);
    Concept unknown = conceptService.getConcept(22);
    // need this to have a different UUID to match our dictionary
    yes = conceptService.getConcept(7);
    yes.setUuid(CommonConcepts.Concepts.YES);
    conceptService.saveConcept(yes);
    Concept famHxDiagnosis = install(new ConceptBuilder(ClinicalConsultationConcepts.Concepts.FAMILY_HISTORY_DIAGNOSIS).datatype(coded).conceptClass(// CIEL says Diagnosis, but this is wrong
    misc).name("109016BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB", "Family history diagnosis", Locale.ENGLISH, ConceptNameType.FULLY_SPECIFIED).mapping(new ConceptMapBuilder("217715ABBBBBBBBBBBBBBBBBBBBBBBBBBBBB").type(sameAs).ensureTerm(ciel, "160592").build()).build());
    // CIEL:1560 (Family Member) is both a question and an answer. At PIH we have two existing concepts for this purpose.
    // This one is only used as a question, so we mark it as NARROWER-THAN CIEL:1560. (And we want to test this here.)
    Concept famHxRelationship = install(new ConceptBuilder(ClinicalConsultationConcepts.Concepts.FAMILY_HISTORY_RELATIONSHIP).datatype(coded).conceptClass(question).name("3e2256c6-26fe-102b-80cb-0017a47871b2", "RELATIONSHIP OF RELATIVE TO PATIENT", Locale.ENGLISH, // locale-preferred
    ConceptNameType.FULLY_SPECIFIED).name("93bc0d72-07d4-102c-b5fa-0017a47871b2", "CONTACT_REL", Locale.ENGLISH, ConceptNameType.SHORT).name("f672a35a-d5db-102d-ad2a-000c29c2a5d7", "RELATION DU PARENT PAR RAPPORT AU PATIENT", Locale.FRENCH, // locale-preferred
    null).description("ecf0bb66-07fe-102c-b5fa-0017a47871b2", "What is the relationship of this relative to this patient?", Locale.ENGLISH).mapping(new ConceptMapBuilder("e9335480-d593-11e4-9dcf-b36e1005e77b").type(narrowerThan).ensureTerm(ciel, "1560").build()).answers(// other options not needed for this test
    father).build());
    Concept famHxComment = install(new ConceptBuilder(ClinicalConsultationConcepts.Concepts.FAMILY_HISTORY_COMMENT).datatype(text).conceptClass(question).name("109055BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB", "Family history comment", Locale.ENGLISH, ConceptNameType.FULLY_SPECIFIED).mapping(new ConceptMapBuilder("217741ABBBBBBBBBBBBBBBBBBBBBBBBBBBBB").type(sameAs).ensureTerm(ciel, "160618").build()).build());
    Concept isSymptomPresent = install(new ConceptBuilder(ClinicalConsultationConcepts.Concepts.PAST_MEDICAL_HISTORY_PRESENCE).datatype(coded).conceptClass(diagnosis).name("2009BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB", "Sign/symptom present", Locale.ENGLISH, ConceptNameType.FULLY_SPECIFIED).answers(yes, no, unknown).mapping(new ConceptMapBuilder("171968ABBBBBBBBBBBBBBBBBBBBBBBBBBBBB").type(sameAs).ensureTerm(ciel, "1729").build()).build());
    Concept famHxConstruct = install(new ConceptBuilder(ClinicalConsultationConcepts.Concepts.FAMILY_HISTORY_CONSTRUCT).datatype(notApplicable).conceptClass(// CIEL says Finding but that's not necessary for the test
    misc).name("109017BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB", "Patient's family history list", Locale.ENGLISH, ConceptNameType.FULLY_SPECIFIED).name("109019BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB", "Family history list", Locale.ENGLISH, null).setMembers(famHxDiagnosis, famHxRelationship, isSymptomPresent, famHxComment).mapping(new ConceptMapBuilder("217716ABBBBBBBBBBBBBBBBBBBBBBBBBBBBB").type(sameAs).ensureTerm(ciel, "160593").build()).build());
}