Examples with ConceptName org.openmrs.ConceptName used on opensource projects

Example 96 with ConceptName

use of org.openmrs.ConceptName in project openmrs-core by openmrs.

the class ConceptDAOTest method getConcepts_shouldReturnCorrectResultsIfAConceptNameContainsSameWordMoreThanOnce.

/**
 * @see {@link
 *      ConceptDAO#getConcepts(String,List<Locale>,null,List<ConceptClass>,List<ConceptClass>,
 *      List<ConceptDatatype>,List<ConceptDatatype>,Concept,Integer,Integer)}
 */
@SuppressWarnings("unchecked")
@Test
@Ignore
public void getConcepts_shouldReturnCorrectResultsIfAConceptNameContainsSameWordMoreThanOnce() {
    ConceptService cs = Context.getConceptService();
    ConceptClass cc = cs.getConceptClass(1);
    Locale locale = Locale.ENGLISH;
    ConceptDatatype dt = cs.getConceptDatatype(4);
    Concept c1 = new Concept();
    ConceptName cn1a = new ConceptName("ONE TERM", locale);
    c1.addName(cn1a);
    c1.setConceptClass(cc);
    c1.setDatatype(dt);
    cs.saveConcept(c1);
    ConceptName cn1b = new ConceptName("ONE TO ONE", locale);
    cn1b.setConceptNameType(ConceptNameType.FULLY_SPECIFIED);
    cn1b.setLocalePreferred(true);
    c1.addName(cn1b);
    cs.saveConcept(c1);
    Assert.assertTrue(cn1a.isSynonym());
    Assert.assertTrue(cn1b.getConceptNameId() > cn1a.getConceptNameId());
    Concept c2 = new Concept();
    ConceptName cn2a = new ConceptName("ONE TO MANY", locale);
    c2.addName(cn2a);
    c2.setConceptClass(cc);
    c2.setDatatype(dt);
    cs.saveConcept(c2);
    updateSearchIndex();
    List<ConceptSearchResult> searchResults1 = dao.getConcepts("one", Collections.singletonList(locale), false, Collections.EMPTY_LIST, Collections.EMPTY_LIST, Collections.EMPTY_LIST, Collections.EMPTY_LIST, null, null, null);
    Assert.assertEquals(2, searchResults1.size());
    Assert.assertEquals(c1, searchResults1.get(0).getConcept());
    Assert.assertEquals(cn1b, searchResults1.get(0).getConceptName());
}

Example 97 with ConceptName

use of org.openmrs.ConceptName in project openmrs-core by openmrs.

the class HibernateDiagnosisDAOTest method shouldSaveDiagnosis.

@Test
public void shouldSaveDiagnosis() {
    CodedOrFreeText codedOrFreeText = new CodedOrFreeText(new Concept(4), new ConceptName(5089), "non coded");
    int diagnosisId = 5;
    Diagnosis diagnosis = new Diagnosis();
    diagnosis.setEncounter(new Encounter(3));
    diagnosis.setRank(2);
    diagnosis.setId(diagnosisId);
    diagnosis.setCertainty(ConditionVerificationStatus.CONFIRMED);
    diagnosis.setPatient(new Patient(2));
    diagnosis.setCondition(new Condition());
    diagnosis.setDiagnosis(codedOrFreeText);
    diagnosis.setUuid("4e663d96-6b78-11e0-93c3-18a9b5e044dc");
    diagnosis.setCreator(new User(1));
    diagnosis.setVoided(false);
    diagnosis.setDateCreated(new Date());
    diagnosisDAO.saveDiagnosis(diagnosis);
    Diagnosis savedDiagnosis = diagnosisDAO.getDiagnosisById(diagnosisId);
    assertEquals(diagnosis.getUuid(), savedDiagnosis.getUuid());
    assertEquals(diagnosis.getVoided(), savedDiagnosis.getVoided());
    assertEquals(diagnosis.getRank(), savedDiagnosis.getRank());
    assertEquals(diagnosis.getCertainty(), savedDiagnosis.getCertainty());
    assertEquals(diagnosis.getCreator(), savedDiagnosis.getCreator());
    assertEquals(diagnosis.getCondition(), savedDiagnosis.getCondition());
    assertEquals(diagnosis.getPatient(), savedDiagnosis.getPatient());
    assertEquals(diagnosis.getEncounter(), savedDiagnosis.getEncounter());
}

Example 98 with ConceptName

use of org.openmrs.ConceptName in project openmrs-module-pihcore by PIH.

the class ConceptsFromMetadataSharing method baseConcept.

private Concept baseConcept(String name) {
    Concept concept = new Concept();
    concept.addName(new ConceptName(name, Locale.ENGLISH));
    concept.addConceptMapping(new ConceptMapBuilder(uuid()).type(sameAs).ensureTerm(pih, name).build());
    return concept;
}

Example 99 with ConceptName

use of org.openmrs.ConceptName in project openmrs-module-pihcore by PIH.

the class MockConcepts method baseConcept.

private Concept baseConcept(String name) {
    Concept concept = new Concept();
    concept.addName(new ConceptName(name, Locale.ENGLISH));
    concept.addConceptMapping(new ConceptMapBuilder(uuid()).type(sameAs).ensureTerm(pih, name).build());
    return concept;
}

Example 100 with ConceptName

use of org.openmrs.ConceptName in project openmrs-module-pihcore by PIH.

the class CauseOfDeathListTagHandlerComponentTest method testCreateAndEdit.

@Test
public void testCreateAndEdit() throws Exception {
    final ConceptName causeOne = conceptService.getConceptNameByUuid("2f7263e4-2a57-49b5-aef0-af9a259aac65");
    final Concept causeTwo = conceptService.getConcept(13);
    final Concept editedCauseTwo = conceptService.getConcept(11);
    final String causeThree = "Cause Three";
    final String editedCauseThree = "Edited Cause Three";
    final Concept causeFour = conceptService.getConcept(16);
    ArrayNode submission = jackson.createArrayNode();
    ObjectNode one = submission.addObject();
    one.put("ConceptName", causeOne.getUuid());
    ObjectNode two = submission.addObject();
    two.put("Concept", causeTwo.getUuid());
    ObjectNode three = submission.addObject();
    three.put("NonCodedValue", causeThree);
    ObjectNode four = submission.addObject();
    four.put("Concept", causeFour.getUuid());
    final String createJson = jackson.writeValueAsString(submission);
    two.put("Concept", editedCauseTwo.getUuid());
    three.put("NonCodedValue", editedCauseThree);
    // this removes 'four'
    submission.remove(3);
    final String editJson = jackson.writeValueAsString(submission);
    final Date date = new Date();
    new RegressionTestHelper() {

        @Override
        public String getXmlDatasetPath() {
            return "";
        }

        @Override
        public String getFormName() {
            return "causesOfDeathForm";
        }

        @Override
        public String[] widgetLabels() {
            return new String[] { "Date:", "Location:", "Provider:", "Causes:" };
        }

        @Override
        public void setupRequest(MockHttpServletRequest request, Map<String, String> widgets) {
            request.setParameter(widgets.get("Date:"), dateAsString(date));
            request.setParameter(widgets.get("Location:"), "2");
            request.setParameter(widgets.get("Provider:"), "1");
            request.setParameter(widgets.get("Causes:"), createJson);
        }

        @Override
        public void testResults(SubmissionResults results) {
            results.assertNoErrors();
            results.assertEncounterCreated();
            results.assertProvider(1);
            results.assertLocation(2);
            results.assertObsGroupCreatedCount(4);
            results.assertObsGroupCreated(groupingConcept.getConceptId(), codedCauseConcept.getId(), causeOne, sequenceConcept.getId(), 1);
            results.assertObsGroupCreated(groupingConcept.getConceptId(), codedCauseConcept.getId(), causeTwo, sequenceConcept.getId(), 2);
            results.assertObsGroupCreated(groupingConcept.getConceptId(), nonCodedCauseConcept.getId(), causeThree, sequenceConcept.getId(), 3);
            results.assertObsGroupCreated(groupingConcept.getConceptId(), codedCauseConcept.getId(), causeFour, sequenceConcept.getId(), 4);
            assertThat(results.getPatient().getCauseOfDeath(), is(causeFour));
        }

        @Override
        public boolean doEditEncounter() {
            return true;
        }

        @Override
        public String[] widgetLabelsForEdit() {
            return widgetLabels();
        }

        @Override
        public void setupEditRequest(MockHttpServletRequest request, Map<String, String> widgets) {
            request.setParameter(widgets.get("Date:"), dateAsString(date));
            request.setParameter(widgets.get("Location:"), "2");
            request.setParameter(widgets.get("Provider:"), "1");
            request.setParameter(widgets.get("Causes:"), editJson);
        }

        @Override
        public void testEditedResults(SubmissionResults results) {
            results.assertNoErrors();
            results.assertEncounterCreated();
            results.assertProvider(1);
            results.assertLocation(2);
            // there should be one voided member obs (causeTwo->causeTwoEdited), and one voided obs group (causeThree)
            // was causeThree
            results.assertObsVoided(groupingConcept.getConceptId(), null);
            assertVoidedObsInObsGroup(results.getEncounterCreated(), groupingConcept, codedCauseConcept, causeTwo);
            results.assertObsGroupCreatedCount(3);
            results.assertObsGroupCreated(groupingConcept.getConceptId(), codedCauseConcept.getId(), causeOne, sequenceConcept.getId(), 1);
            results.assertObsGroupCreated(groupingConcept.getConceptId(), codedCauseConcept.getId(), editedCauseTwo, sequenceConcept.getId(), 2);
            results.assertObsGroupCreated(groupingConcept.getConceptId(), nonCodedCauseConcept.getId(), editedCauseThree, sequenceConcept.getId(), 3);
            assertThat(results.getPatient().getCauseOfDeath(), is(unknownConcept));
        }

        private void assertVoidedObsInObsGroup(Encounter encounter, Concept groupingConcept, Concept concept, Concept value) {
            for (Obs candidate : encounter.getObsAtTopLevel(true)) {
                if (groupingConcept.equals(candidate.getConcept())) {
                    for (Obs member : candidate.getGroupMembers(true)) {
                        if (member.getVoided() && member.getConcept().equals(concept) && member.getValueCoded().equals(value)) {
                            return;
                        }
                    }
                }
            }
            Assert.fail("Did not find a voided obs of " + concept + "=" + value + " inside a group of " + groupingConcept);
        }
    }.run();
}