Examples with Patient org.openmrs.Patient used on opensource projects

Example 16 with Patient

use of org.openmrs.Patient in project openmrs-module-pihcore by PIH.

the class PihCloseStaleVisitsTaskTest method test_shouldNotKeepVisitOpenIfItHasEDTriageAndEncounterWithinFortyEightHoursButAlsoDischargeEncounter.

@Test
public void test_shouldNotKeepVisitOpenIfItHasEDTriageAndEncounterWithinFortyEightHoursButAlsoDischargeEncounter() throws Exception {
    ContextSensitiveMetadataTestUtils.setupDispositionDescriptor(conceptService, dispositionService);
    ContextSensitiveMetadataTestUtils.setupAdmissionDecisionConcept(conceptService, emrApiProperties);
    ContextSensitiveMetadataTestUtils.setupSupportsVisitLocationTag(locationService);
    // patient already has one visit in test dataset
    Patient patient = patientService.getPatient(7);
    // need to tag the unknown location so we don't run into an error when testing against the existing visits in the test dataset
    Location unknownLocation = locationService.getLocation(1);
    unknownLocation.addTag(emrApiProperties.getSupportsVisitsLocationTag());
    locationService.saveLocation(unknownLocation);
    Location location = locationService.getLocation(2);
    location.addTag(emrApiProperties.getSupportsVisitsLocationTag());
    locationService.saveLocation(location);
    Visit visit = new Visit();
    visit.setStartDatetime(DateUtils.addHours(new Date(), -60));
    visit.setPatient(patient);
    visit.setLocation(location);
    visit.setVisitType(emrApiProperties.getAtFacilityVisitType());
    // create ED Triage encounter
    Encounter edTriage = new Encounter();
    edTriage.setPatient(patient);
    edTriage.setEncounterType(encounterService.getEncounterTypeByUuid(ED_TRIAGE_ENCOUNTER_TYPE_UUID));
    edTriage.setEncounterDatetime(visit.getStartDatetime());
    encounterService.saveEncounter(edTriage);
    // create a another encounter within 48 hours
    Encounter consult = new Encounter();
    consult.setPatient(patient);
    consult.setEncounterType(emrApiProperties.getVisitNoteEncounterType());
    consult.setEncounterDatetime(DateUtils.addHours(new Date(), -47));
    encounterService.saveEncounter(consult);
    // create an encounter with a disposition obs of "discharge
    Encounter encounterWithDisposition = new Encounter();
    encounterWithDisposition.setPatient(patient);
    encounterWithDisposition.setEncounterType(encounterService.getEncounterType(1));
    encounterWithDisposition.setEncounterDatetime(visit.getStartDatetime());
    Obs dispositionObsGroup = new Obs();
    dispositionObsGroup.setConcept(dispositionService.getDispositionDescriptor().getDispositionSetConcept());
    Obs dispositionObs = new Obs();
    dispositionObs.setConcept(dispositionService.getDispositionDescriptor().getDispositionConcept());
    // this fake code is set in ContextSensitiveMetadataTestUtils
    dispositionObs.setValueCoded(emrConceptService.getConcept(EmrApiConstants.EMR_CONCEPT_SOURCE_NAME + ":Discharged"));
    dispositionObsGroup.addGroupMember(dispositionObs);
    encounterWithDisposition.addObs(dispositionObsGroup);
    encounterService.saveEncounter(encounterWithDisposition);
    visit.addEncounter(edTriage);
    visit.addEncounter(consult);
    visit.addEncounter(encounterWithDisposition);
    visitService.saveVisit(visit);
    VisitDomainWrapper activeVisit = adtService.getActiveVisit(patient, location);
    // sanity check
    assertNotNull(activeVisit);
    new PihCloseStaleVisitsTask().execute();
    activeVisit = adtService.getActiveVisit(patient, location);
    assertNull(activeVisit);
}

Example 17 with Patient

use of org.openmrs.Patient in project openmrs-module-pihcore by PIH.

the class PihCloseStaleVisitsTaskTest method test_shouldNotCloseVisitIfHasEncounterWithinExpirationRange.

@Test
public void test_shouldNotCloseVisitIfHasEncounterWithinExpirationRange() throws Exception {
    ContextSensitiveMetadataTestUtils.setupDispositionDescriptor(conceptService, dispositionService);
    ContextSensitiveMetadataTestUtils.setupAdmissionDecisionConcept(conceptService, emrApiProperties);
    ContextSensitiveMetadataTestUtils.setupSupportsVisitLocationTag(locationService);
    // patient already has one visit in test dataset
    Patient patient = patientService.getPatient(7);
    // need o tag the unknown location so we don't run into an error when testing against the existing visits in the test dataset
    Location unknownLocation = locationService.getLocation(1);
    unknownLocation.addTag(emrApiProperties.getSupportsVisitsLocationTag());
    locationService.saveLocation(unknownLocation);
    Location location = locationService.getLocation(2);
    location.addTag(emrApiProperties.getSupportsVisitsLocationTag());
    locationService.saveLocation(location);
    Visit visit = new Visit();
    visit.setStartDatetime(DateUtils.addHours(new Date(), -14));
    visit.setPatient(patient);
    visit.setLocation(location);
    visit.setVisitType(emrApiProperties.getAtFacilityVisitType());
    // create an encounter within the expiration range
    Encounter encounter = new Encounter();
    encounter.setPatient(patient);
    encounter.setEncounterType(encounterService.getEncounterType(1));
    // expire hours - 1
    encounter.setEncounterDatetime(DateUtils.addHours(new Date(), -(emrApiProperties.getVisitExpireHours() - 1)));
    encounterService.saveEncounter(encounter);
    visit.addEncounter(encounter);
    visitService.saveVisit(visit);
    VisitDomainWrapper activeVisit = adtService.getActiveVisit(patient, location);
    // sanity check
    assertNotNull(activeVisit);
    new PihCloseStaleVisitsTask().execute();
    activeVisit = adtService.getActiveVisit(patient, location);
    assertNotNull(activeVisit);
}

Example 18 with Patient

use of org.openmrs.Patient in project openmrs-core by openmrs.

the class HibernatePatientDAO method getDuplicatePatientsSQLString.

private String getDuplicatePatientsSQLString(List<String> attributes) {
    StringBuilder outerSelect = new StringBuilder("select distinct t1.patient_id from patient t1 ");
    final String t5 = " = t5.";
    Set<String> patientFieldNames = OpenmrsUtil.getDeclaredFields(Patient.class);
    Set<String> personFieldNames = OpenmrsUtil.getDeclaredFields(Person.class);
    Set<String> personNameFieldNames = OpenmrsUtil.getDeclaredFields(PersonName.class);
    Set<String> identifierFieldNames = OpenmrsUtil.getDeclaredFields(PatientIdentifier.class);
    List<String> whereConditions = new ArrayList<>();
    List<String> innerFields = new ArrayList<>();
    StringBuilder innerSelect = new StringBuilder(" from patient p1 ");
    for (String attribute : attributes) {
        if (attribute != null) {
            attribute = attribute.trim();
        }
        if (patientFieldNames.contains(attribute)) {
            AbstractEntityPersister aep = (AbstractEntityPersister) sessionFactory.getClassMetadata(Patient.class);
            String[] properties = aep.getPropertyColumnNames(attribute);
            if (properties.length >= 1) {
                attribute = properties[0];
            }
            whereConditions.add(" t1." + attribute + t5 + attribute);
            innerFields.add("p1." + attribute);
        } else if (personFieldNames.contains(attribute)) {
            if (!outerSelect.toString().contains("person")) {
                outerSelect.append("inner join person t2 on t1.patient_id = t2.person_id ");
                innerSelect.append("inner join person person1 on p1.patient_id = person1.person_id ");
            }
            AbstractEntityPersister aep = (AbstractEntityPersister) sessionFactory.getClassMetadata(Person.class);
            if (aep != null) {
                String[] properties = aep.getPropertyColumnNames(attribute);
                if (properties != null && properties.length >= 1) {
                    attribute = properties[0];
                }
            }
            whereConditions.add(" t2." + attribute + t5 + attribute);
            innerFields.add("person1." + attribute);
        } else if (personNameFieldNames.contains(attribute)) {
            if (!outerSelect.toString().contains("person_name")) {
                outerSelect.append("inner join person_name t3 on t2.person_id = t3.person_id ");
                innerSelect.append("inner join person_name pn1 on person1.person_id = pn1.person_id ");
            }
            // Since we are firing a native query get the actual table column name from the field name of the entity
            AbstractEntityPersister aep = (AbstractEntityPersister) sessionFactory.getClassMetadata(PersonName.class);
            if (aep != null) {
                String[] properties = aep.getPropertyColumnNames(attribute);
                if (properties != null && properties.length >= 1) {
                    attribute = properties[0];
                }
            }
            whereConditions.add(" t3." + attribute + t5 + attribute);
            innerFields.add("pn1." + attribute);
        } else if (identifierFieldNames.contains(attribute)) {
            if (!outerSelect.toString().contains("patient_identifier")) {
                outerSelect.append("inner join patient_identifier t4 on t1.patient_id = t4.patient_id ");
                innerSelect.append("inner join patient_identifier pi1 on p1.patient_id = pi1.patient_id ");
            }
            AbstractEntityPersister aep = (AbstractEntityPersister) sessionFactory.getClassMetadata(PatientIdentifier.class);
            if (aep != null) {
                String[] properties = aep.getPropertyColumnNames(attribute);
                if (properties != null && properties.length >= 1) {
                    attribute = properties[0];
                }
            }
            whereConditions.add(" t4." + attribute + t5 + attribute);
            innerFields.add("pi1." + attribute);
        } else {
            log.warn("Unidentified attribute: " + attribute);
        }
    }
    if (CollectionUtils.isNotEmpty(innerFields) || CollectionUtils.isNotEmpty(whereConditions)) {
        String innerFieldsJoined = StringUtils.join(innerFields, ", ");
        String whereFieldsJoined = StringUtils.join(whereConditions, " and ");
        String innerWhereCondition = "";
        if (!attributes.contains("includeVoided")) {
            innerWhereCondition = " where p1.voided = false ";
        }
        String innerQuery = "(Select " + innerFieldsJoined + innerSelect + innerWhereCondition + " group by " + innerFieldsJoined + " having count(*) > 1" + " order by " + innerFieldsJoined + ") t5";
        return outerSelect + ", " + innerQuery + " where " + whereFieldsJoined + ";";
    }
    return null;
}

Example 19 with Patient

use of org.openmrs.Patient in project openmrs-core by openmrs.

the class HibernatePatientDAO method getDuplicatePatientsByAttributes.

/**
 * @param attributes attributes on a Person or Patient object. similar to: [gender, givenName,
 *                   middleName, familyName]
 * @return           list of patients that match other patients
 * @see org.openmrs.api.db.PatientDAO#getDuplicatePatientsByAttributes(java.util.List)
 */
@SuppressWarnings("unchecked")
@Override
public List<Patient> getDuplicatePatientsByAttributes(List<String> attributes) {
    List<Patient> patients = new ArrayList<>();
    List<Integer> patientIds = new ArrayList<>();
    if (!attributes.isEmpty()) {
        String sqlString = getDuplicatePatientsSQLString(attributes);
        if (sqlString != null) {
            SQLQuery sqlquery = sessionFactory.getCurrentSession().createSQLQuery(sqlString);
            patientIds = sqlquery.list();
            if (!patientIds.isEmpty()) {
                Query query = sessionFactory.getCurrentSession().createQuery("from Patient p1 where p1.patientId in (:ids)");
                query.setParameterList("ids", patientIds);
                patients = query.list();
            }
        }
    }
    sortDuplicatePatients(patients, patientIds);
    return patients;
}

Example 20 with Patient

use of org.openmrs.Patient in project openmrs-core by openmrs.

the class OrderServiceTest method getOrders_shouldIncludeVoidedMatchesIfIncludeVoidedIsSetToTrue.

/**
 * @see OrderService#getOrders(org.openmrs.Patient, org.openmrs.CareSetting,
 *      org.openmrs.OrderType, boolean)
 */
@Test
public void getOrders_shouldIncludeVoidedMatchesIfIncludeVoidedIsSetToTrue() {
    Patient patient = patientService.getPatient(2);
    CareSetting outPatient = orderService.getCareSetting(1);
    OrderType testOrderType = orderService.getOrderType(2);
    assertEquals(4, orderService.getOrders(patient, outPatient, testOrderType, true).size());
}