Examples with PatientProgram org.openmrs.PatientProgram used on opensource projects

Example 21 with PatientProgram

use of org.openmrs.PatientProgram in project openmrs-core by openmrs.

the class ProgramWorkflowServiceTest method purgeProgram_shouldPurgeProgramWithPatientsEnrolled.

@Test
public void purgeProgram_shouldPurgeProgramWithPatientsEnrolled() {
    Program program = Context.getProgramWorkflowService().getProgram(2);
    // program has at least one patient enrolled
    List<PatientProgram> patientPrograms = Context.getProgramWorkflowService().getPatientPrograms(null, program, null, null, null, null, true);
    assertTrue(patientPrograms.size() > 0);
    Context.getProgramWorkflowService().purgeProgram(program);
    // should cascade to patient programs
    for (PatientProgram patientProgram : patientPrograms) {
        assertNull(Context.getProgramWorkflowService().getPatientProgram(patientProgram.getId()));
    }
    // make sure that the program was deleted properly
    assertNull(Context.getProgramWorkflowService().getProgram(2));
}

Example 22 with PatientProgram

use of org.openmrs.PatientProgram in project openmrs-core by openmrs.

the class MigrationHelper method importProgramsAndStatuses.

public static int importProgramsAndStatuses(List<String> programWorkflow) throws ParseException {
    ProgramWorkflowService pws = Context.getProgramWorkflowService();
    PatientService ps = Context.getPatientService();
    List<PatientProgram> patientPrograms = new ArrayList<>();
    Map<String, PatientProgram> knownPatientPrograms = new HashMap<>();
    Map<String, Program> programsByName = new HashMap<>();
    for (Program program : pws.getAllPrograms()) {
        programsByName.put(program.getConcept().getName(Context.getLocale(), false).getName(), program);
    }
    for (String s : programWorkflow) {
        // ENROLLMENT:HIVEMR-V1,9266,IMB HIV PROGRAM,2005-08-25,
        log.debug(s);
        if (s.startsWith("ENROLLMENT:")) {
            s = s.substring(s.indexOf(":") + 1);
            String[] temp = s.split(",");
            PatientIdentifierType pit = ps.getPatientIdentifierTypeByName(temp[0]);
            String identifier = temp[1];
            List<PatientIdentifier> pis = ps.getPatientIdentifiers(identifier, Collections.singletonList(pit), null, null, null);
            if (pis.size() != 1) {
                throw new IllegalArgumentException("Found " + pis.size() + " instances of identifier " + identifier + " of type " + pit);
            }
            Patient p = pis.get(0).getPatient();
            Program program = programsByName.get(temp[2]);
            if (program == null) {
                throw new RuntimeException("Couldn't find program \"" + temp[2] + "\" in " + programsByName);
            }
            Date enrollmentDate = temp.length < 4 ? null : parseDate(temp[3]);
            Date completionDate = temp.length < 5 ? null : parseDate(temp[4]);
            PatientProgram pp = new PatientProgram();
            pp.setPatient(p);
            pp.setProgram(program);
            pp.setDateEnrolled(enrollmentDate);
            pp.setDateCompleted(completionDate);
            patientPrograms.add(pp);
            // "HIVEMR-V1,9266,IMB HIV PROGRAM"
            knownPatientPrograms.put(temp[0] + "," + temp[1] + "," + temp[2], pp);
        } else if (s.startsWith("STATUS:")) {
            // STATUS:HIVEMR-V1,9266,IMB HIV PROGRAM,TREATMENT STATUS,ACTIVE,2005-08-25,,
            s = s.substring(s.indexOf(":") + 1);
            String[] temp = s.split(",");
            Program program = programsByName.get(temp[2]);
            if (program == null) {
                throw new RuntimeException("Couldn't find program \"" + temp[2] + "\" in " + programsByName);
            }
            ProgramWorkflow wf = program.getWorkflowByName(temp[3]);
            if (wf == null) {
                throw new RuntimeException("Couldn't find workflow \"" + temp[3] + "\" for program " + program + " (in " + program.getAllWorkflows() + ")");
            }
            ProgramWorkflowState st = wf.getStateByName(temp[4]);
            if (st == null) {
                throw new RuntimeException("Couldn't find state \"" + temp[4] + "\" for workflow " + wf + " (in " + wf.getStates() + ")");
            }
            Date startDate = temp.length < 6 ? null : parseDate(temp[5]);
            Date endDate = temp.length < 7 ? null : parseDate(temp[6]);
            PatientState state = new PatientState();
            PatientProgram pp = knownPatientPrograms.get(temp[0] + "," + temp[1] + "," + temp[2]);
            state.setPatientProgram(pp);
            state.setState(st);
            state.setStartDate(startDate);
            state.setEndDate(endDate);
            pp.getStates().add(state);
        }
    }
    int numAdded = 0;
    for (PatientProgram pp : knownPatientPrograms.values()) {
        pws.savePatientProgram(pp);
        ++numAdded;
    }
    return numAdded;
}

Example 23 with PatientProgram

use of org.openmrs.PatientProgram in project openmrs-core by openmrs.

the class PatientProgramValidator method validate.

/**
 * Validates the given PatientProgram.
 *
 * @param obj The patient program to validate.
 * @param errors Errors
 * @see org.springframework.validation.Validator#validate(java.lang.Object,
 *      org.springframework.validation.Errors)
 * @should fail validation if obj is null
 * @should fail if the patient field is blank
 * @should fail if there is more than one patientState with the same states and startDates
 * @should fail if there is more than one state with a null start date in the same workflow
 * @should pass if the start date of the first patient state in the work flow is null
 * @should fail if any patient state has an end date before its start date
 * @should fail if the program property is null
 * @should fail if any patient states overlap each other in the same work flow
 * @should fail if a patientState has an invalid work flow state
 * @should fail if a patient program has duplicate states in the same work flow
 * @should fail if a patient is in multiple states in the same work flow
 * @should fail if a enrolled date is in future at the date it set
 * @should fail if a completion date is in future at the date it set
 * @should fail if a patient program has an enroll date after its completion
 * @should pass if a patient is in multiple states in different work flows
 * @should pass for a valid program
 * @should pass for patient states that have the same start dates in the same work flow
 * @should pass validation if field lengths are correct
 * @should fail validation if field lengths are not correct
 */
@Override
public void validate(Object obj, Errors errors) {
    if (log.isDebugEnabled()) {
        log.debug(this.getClass().getName() + ".validate...");
    }
    if (obj == null) {
        throw new IllegalArgumentException("The parameter obj should not be null");
    }
    MessageSourceService mss = Context.getMessageSourceService();
    PatientProgram patientProgram = (PatientProgram) obj;
    ValidationUtils.rejectIfEmpty(errors, "patient", "error.required", new Object[] { mss.getMessage("general.patient") });
    ValidationUtils.rejectIfEmpty(errors, "program", "error.required", new Object[] { mss.getMessage("Program.program") });
    if (errors.hasErrors()) {
        return;
    }
    ValidationUtils.rejectIfEmpty(errors, "dateEnrolled", "error.patientProgram.enrolledDateEmpty");
    Date today = new Date();
    if (patientProgram.getDateEnrolled() != null && today.before(patientProgram.getDateEnrolled())) {
        errors.rejectValue("dateEnrolled", "error.patientProgram.enrolledDateDateCannotBeInFuture");
    }
    if (patientProgram.getDateCompleted() != null && today.before(patientProgram.getDateCompleted())) {
        errors.rejectValue("dateCompleted", "error.patientProgram.completionDateCannotBeInFuture");
    }
    // if enrollment or complete date of program is in future or complete date has come before enroll date we should throw error
    if (patientProgram.getDateEnrolled() != null && OpenmrsUtil.compareWithNullAsLatest(patientProgram.getDateCompleted(), patientProgram.getDateEnrolled()) < 0) {
        errors.rejectValue("dateCompleted", "error.patientProgram.enrolledDateShouldBeBeforecompletionDate");
    }
    Set<ProgramWorkflow> workFlows = patientProgram.getProgram().getWorkflows();
    // Patient state validation is specific to a work flow
    for (ProgramWorkflow workFlow : workFlows) {
        Set<PatientState> patientStates = patientProgram.getStates();
        if (patientStates != null) {
            // Set to store to keep track of unique valid state and start date combinations
            Set<String> statesAndStartDates = new HashSet<>();
            PatientState latestState = null;
            boolean foundCurrentPatientState = false;
            boolean foundStateWithNullStartDate = false;
            for (PatientState patientState : patientStates) {
                if (patientState.getVoided()) {
                    continue;
                }
                String missingRequiredFieldCode = null;
                // only the initial state can have a null start date
                if (patientState.getStartDate() == null) {
                    if (foundStateWithNullStartDate) {
                        missingRequiredFieldCode = "general.dateStart";
                    } else {
                        foundStateWithNullStartDate = true;
                    }
                } else if (patientState.getState() == null) {
                    missingRequiredFieldCode = "State.state";
                }
                if (missingRequiredFieldCode != null) {
                    errors.rejectValue("states", "PatientState.error.requiredField", new Object[] { mss.getMessage(missingRequiredFieldCode) }, null);
                    return;
                }
                // state should belong to one of the workflows in the program
                // note that we are iterating over getAllWorkflows() here because we want to include
                // retired workflows, and the workflows variable does not include retired workflows
                boolean isValidPatientState = false;
                for (ProgramWorkflow wf : patientProgram.getProgram().getAllWorkflows()) {
                    if (wf.getStates().contains(patientState.getState())) {
                        isValidPatientState = true;
                        break;
                    }
                }
                if (!isValidPatientState) {
                    errors.rejectValue("states", "PatientState.error.invalidPatientState", new Object[] { patientState }, null);
                    return;
                }
                // will validate it with other states in its workflow
                if (!patientState.getState().getProgramWorkflow().equals(workFlow)) {
                    continue;
                }
                if (OpenmrsUtil.compareWithNullAsLatest(patientState.getEndDate(), patientState.getStartDate()) < 0) {
                    errors.rejectValue("states", "PatientState.error.endDateCannotBeBeforeStartDate");
                    return;
                } else if (statesAndStartDates.contains(patientState.getState().getUuid() + "" + patientState.getStartDate())) {
                    // we already have a patient state with the same work flow state and start date
                    errors.rejectValue("states", "PatientState.error.duplicatePatientStates");
                    return;
                }
                // Ensure that the patient is only in one state at a given time
                if (!foundCurrentPatientState && patientState.getEndDate() == null) {
                    foundCurrentPatientState = true;
                } else if (foundCurrentPatientState && patientState.getEndDate() == null) {
                    errors.rejectValue("states", "PatientProgram.error.cannotBeInMultipleStates");
                    return;
                }
                if (latestState == null) {
                    latestState = patientState;
                } else {
                    if (patientState.compareTo(latestState) > 0) {
                        // patient should have already left this state since it is older
                        if (latestState.getEndDate() == null) {
                            errors.rejectValue("states", "PatientProgram.error.cannotBeInMultipleStates");
                            return;
                        } else if (OpenmrsUtil.compareWithNullAsEarliest(patientState.getStartDate(), latestState.getEndDate()) < 0) {
                            // current state was started before a previous state was ended
                            errors.rejectValue("states", "PatientProgram.error.foundOverlappingStates", new Object[] { patientState.getStartDate(), latestState.getEndDate() }, null);
                            return;
                        }
                        latestState = patientState;
                    } else if (patientState.compareTo(latestState) < 0) {
                        // patient should have already left this state since it is older
                        if (patientState.getEndDate() == null) {
                            errors.rejectValue("states", "PatientProgram.error.cannotBeInMultipleStates");
                            return;
                        } else if (OpenmrsUtil.compareWithNullAsEarliest(latestState.getStartDate(), patientState.getEndDate()) < 0) {
                            // latest state was started before a previous state was ended
                            errors.rejectValue("states", "PatientProgram.error.foundOverlappingStates");
                            return;
                        }
                    }
                }
                statesAndStartDates.add(patientState.getState().getUuid() + "" + patientState.getStartDate());
            }
        }
    }
    ValidateUtil.validateFieldLengths(errors, obj.getClass(), "voidReason");
// 
}

Example 24 with PatientProgram

use of org.openmrs.PatientProgram in project openmrs-core by openmrs.

the class PatientProgramValidatorTest method validate_shouldFailIfAPatientStateHasAnInvalidWorkFlowState.

/**
 * @see PatientProgramValidator#validate(Object,Errors)
 */
@Test
public void validate_shouldFailIfAPatientStateHasAnInvalidWorkFlowState() {
    executeDataSet("org/openmrs/api/include/ProgramWorkflowServiceTest-otherProgramWorkflows.xml");
    PatientProgram program = Context.getProgramWorkflowService().getPatientProgram(1);
    PatientState patientState = program.getStates().iterator().next();
    patientState.setState(Context.getProgramWorkflowService().getStateByUuid("31c82d66-245c-11e1-9cf0-00248140a5eb"));
    BindException errors = new BindException(program, "");
    new PatientProgramValidator().validate(program, errors);
    Assert.assertTrue(errors.hasFieldErrors("states"));
}

Example 25 with PatientProgram

use of org.openmrs.PatientProgram in project openmrs-core by openmrs.

the class PatientProgramValidatorTest method validate_shouldFailIfThereIsMoreThanOneStateWithANullStartDateInTheSameWorkflow.

/**
 * @see PatientProgramValidator#validate(Object,Errors)
 */
@Test
public void validate_shouldFailIfThereIsMoreThanOneStateWithANullStartDateInTheSameWorkflow() {
    ProgramWorkflowService pws = Context.getProgramWorkflowService();
    Patient patient = Context.getPatientService().getPatient(6);
    PatientProgram pp = new PatientProgram();
    pp.setPatient(patient);
    pp.setProgram(pws.getProgram(1));
    ProgramWorkflow testWorkflow = pp.getProgram().getWorkflow(1);
    // Add 2 other patient states with null start date
    PatientState newPatientState1 = new PatientState();
    newPatientState1.setState(testWorkflow.getState(1));
    pp.getStates().add(newPatientState1);
    PatientState newPatientState2 = new PatientState();
    newPatientState2.setState(testWorkflow.getState(2));
    pp.getStates().add(newPatientState2);
    BindException errors = new BindException(pp, "");
    new PatientProgramValidator().validate(pp, errors);
    Assert.assertEquals(true, errors.hasFieldErrors("states"));
}