Examples with PatientService org.openmrs.api.PatientService used on opensource projects

Example 6 with PatientService

use of org.openmrs.api.PatientService in project openmrs-core by openmrs.

the class PatientDataVoidHandlerTest method handle_shouldVoidCohortMemberships.

@Test
public void handle_shouldVoidCohortMemberships() throws Exception {
    // test a corner case by letting the same patient belong to the cohort for two separate periods
    CohortMembership membership1 = new CohortMembership(7, parseDate("2001-01-01", "yyyy-MM-dd"));
    membership1.setEndDate(parseDate("2001-12-31", "yyyy-MM-dd"));
    CohortMembership membership2 = new CohortMembership(7, parseDate("2017-01-01", "yyyy-MM-dd"));
    CohortMembership membership3 = new CohortMembership(8);
    Cohort cohort = new Cohort();
    cohort.setName("Cohort");
    cohort.setDescription("Description");
    cohort.setUuid(COHORT_UUID);
    cohort.addMembership(membership1);
    cohort.addMembership(membership2);
    cohort.addMembership(membership3);
    cohortService.saveCohort(cohort);
    PatientService patientService = Context.getPatientService();
    patientService.voidPatient(patientService.getPatient(7), "void reason");
    Collection<CohortMembership> memberships = cohortService.getCohortByUuid(COHORT_UUID).getMemberships(false);
    assertEquals(1, memberships.size());
    // patientId 7 was voided
    assertEquals(8, (int) memberships.iterator().next().getPatientId());
}

Example 7 with PatientService

use of org.openmrs.api.PatientService in project openmrs-core by openmrs.

the class PatientIdentifierValidatorTest method validateIdentifier_shouldPassIfInUseAndIdTypeUniquenessIsSetToNonUnique.

/**
 * @see PatientIdentifierValidator#validateIdentifier(PatientIdentifier)
 */
@Test
public void validateIdentifier_shouldPassIfInUseAndIdTypeUniquenessIsSetToNonUnique() {
    PatientService patientService = Context.getPatientService();
    PatientIdentifier duplicateId = patientService.getPatientIdentifier(1);
    Assert.assertNotNull(duplicateId.getLocation());
    PatientIdentifierType idType = duplicateId.getIdentifierType();
    idType.setUniquenessBehavior(UniquenessBehavior.NON_UNIQUE);
    patientService.savePatientIdentifierType(idType);
    PatientIdentifier pi = new PatientIdentifier(duplicateId.getIdentifier(), idType, duplicateId.getLocation());
    PatientIdentifierValidator.validateIdentifier(pi);
}

Example 8 with PatientService

use of org.openmrs.api.PatientService in project openmrs-core by openmrs.

the class MigrationHelper method importProgramsAndStatuses.

public static int importProgramsAndStatuses(List<String> programWorkflow) throws ParseException {
    ProgramWorkflowService pws = Context.getProgramWorkflowService();
    PatientService ps = Context.getPatientService();
    List<PatientProgram> patientPrograms = new ArrayList<>();
    Map<String, PatientProgram> knownPatientPrograms = new HashMap<>();
    Map<String, Program> programsByName = new HashMap<>();
    for (Program program : pws.getAllPrograms()) {
        programsByName.put(program.getConcept().getName(Context.getLocale(), false).getName(), program);
    }
    for (String s : programWorkflow) {
        // ENROLLMENT:HIVEMR-V1,9266,IMB HIV PROGRAM,2005-08-25,
        log.debug(s);
        if (s.startsWith("ENROLLMENT:")) {
            s = s.substring(s.indexOf(":") + 1);
            String[] temp = s.split(",");
            PatientIdentifierType pit = ps.getPatientIdentifierTypeByName(temp[0]);
            String identifier = temp[1];
            List<PatientIdentifier> pis = ps.getPatientIdentifiers(identifier, Collections.singletonList(pit), null, null, null);
            if (pis.size() != 1) {
                throw new IllegalArgumentException("Found " + pis.size() + " instances of identifier " + identifier + " of type " + pit);
            }
            Patient p = pis.get(0).getPatient();
            Program program = programsByName.get(temp[2]);
            if (program == null) {
                throw new RuntimeException("Couldn't find program \"" + temp[2] + "\" in " + programsByName);
            }
            Date enrollmentDate = temp.length < 4 ? null : parseDate(temp[3]);
            Date completionDate = temp.length < 5 ? null : parseDate(temp[4]);
            PatientProgram pp = new PatientProgram();
            pp.setPatient(p);
            pp.setProgram(program);
            pp.setDateEnrolled(enrollmentDate);
            pp.setDateCompleted(completionDate);
            patientPrograms.add(pp);
            // "HIVEMR-V1,9266,IMB HIV PROGRAM"
            knownPatientPrograms.put(temp[0] + "," + temp[1] + "," + temp[2], pp);
        } else if (s.startsWith("STATUS:")) {
            // STATUS:HIVEMR-V1,9266,IMB HIV PROGRAM,TREATMENT STATUS,ACTIVE,2005-08-25,,
            s = s.substring(s.indexOf(":") + 1);
            String[] temp = s.split(",");
            Program program = programsByName.get(temp[2]);
            if (program == null) {
                throw new RuntimeException("Couldn't find program \"" + temp[2] + "\" in " + programsByName);
            }
            ProgramWorkflow wf = program.getWorkflowByName(temp[3]);
            if (wf == null) {
                throw new RuntimeException("Couldn't find workflow \"" + temp[3] + "\" for program " + program + " (in " + program.getAllWorkflows() + ")");
            }
            ProgramWorkflowState st = wf.getStateByName(temp[4]);
            if (st == null) {
                throw new RuntimeException("Couldn't find state \"" + temp[4] + "\" for workflow " + wf + " (in " + wf.getStates() + ")");
            }
            Date startDate = temp.length < 6 ? null : parseDate(temp[5]);
            Date endDate = temp.length < 7 ? null : parseDate(temp[6]);
            PatientState state = new PatientState();
            PatientProgram pp = knownPatientPrograms.get(temp[0] + "," + temp[1] + "," + temp[2]);
            state.setPatientProgram(pp);
            state.setState(st);
            state.setStartDate(startDate);
            state.setEndDate(endDate);
            pp.getStates().add(state);
        }
    }
    int numAdded = 0;
    for (PatientProgram pp : knownPatientPrograms.values()) {
        pws.savePatientProgram(pp);
        ++numAdded;
    }
    return numAdded;
}