use of org.openrdf.model.impl.URIImpl in project incubator-rya by apache.
the class MongoStatementMetadataIT method simpleQueryWithBindingSetJoinPropertyToSubject.
/**
* Tests to see if correct result is passed back when a metadata statement
* is joined with a StatementPattern statement (i.e. a common variable
* appears in a StatementPattern statement and a metadata statement).
* StatementPattern statements have either rdf:subject, rdf:predicate, or
* rdf:object as the predicate while a metadata statement is any statement
* in the reified query whose predicate is not rdf:type and not a
* StatementPattern predicate.
*
* @throws MalformedQueryException
* @throws QueryEvaluationException
* @throws RyaDAOException
*/
@Test
public void simpleQueryWithBindingSetJoinPropertyToSubject() throws Exception {
Sail sail = RyaSailFactory.getInstance(conf);
MongoDBRyaDAO dao = new MongoDBRyaDAO();
try {
dao.setConf(conf);
dao.init();
final StatementMetadata metadata1 = new StatementMetadata();
metadata1.addMetadata(new RyaURI("http://createdBy"), new RyaURI("http://Doug"));
metadata1.addMetadata(new RyaURI("http://createdOn"), new RyaType(XMLSchema.DATE, "2017-01-04"));
final StatementMetadata metadata2 = new StatementMetadata();
metadata2.addMetadata(new RyaURI("http://createdBy"), new RyaURI("http://Bob"));
metadata2.addMetadata(new RyaURI("http://createdOn"), new RyaType(XMLSchema.DATE, "2017-02-04"));
final RyaStatement statement1 = new RyaStatement(new RyaURI("http://Joe"), new RyaURI("http://worksAt"), new RyaURI("http://BurgerShack"), new RyaURI("http://context"), "", metadata1);
final RyaStatement statement2 = new RyaStatement(new RyaURI("http://Joe"), new RyaURI("http://talksTo"), new RyaURI("http://Betty"), new RyaURI("http://context"), "", metadata1);
final RyaStatement statement3 = new RyaStatement(new RyaURI("http://Fred"), new RyaURI("http://talksTo"), new RyaURI("http://Amanda"), new RyaURI("http://context"), "", metadata1);
final RyaStatement statement4 = new RyaStatement(new RyaURI("http://Joe"), new RyaURI("http://talksTo"), new RyaURI("http://Wanda"), new RyaURI("http://context"), "", metadata2);
dao.add(statement1);
dao.add(statement2);
dao.add(statement3);
dao.add(statement4);
SailRepositoryConnection conn = new SailRepository(sail).getConnection();
final TupleQueryResult result = conn.prepareTupleQuery(QueryLanguage.SPARQL, query2).evaluate();
final Set<BindingSet> expected = new HashSet<>();
final QueryBindingSet expected1 = new QueryBindingSet();
expected1.addBinding("b", new URIImpl("http://Betty"));
expected1.addBinding("a", new URIImpl("http://Joe"));
expected1.addBinding("c", new URIImpl("http://Doug"));
expected.add(expected1);
final Set<BindingSet> bsSet = new HashSet<>();
while (result.hasNext()) {
bsSet.add(result.next());
}
assertEquals(expected, bsSet);
dao.delete(statement1, conf);
dao.delete(statement2, conf);
dao.delete(statement3, conf);
dao.delete(statement4, conf);
} finally {
dao.destroy();
sail.shutDown();
}
}
use of org.openrdf.model.impl.URIImpl in project incubator-rya by apache.
the class RyaDirectExample method createPCJ.
// private static void testDeleteGeoData(final SailRepositoryConnection conn)
// throws Exception {
// // Delete all stored points
// final String sparqlDelete = "PREFIX geo: <http://www.opengis.net/ont/geosparql#> "//
// + "PREFIX geof: <http://www.opengis.net/def/function/geosparql/> "//
// + "DELETE {\n" //
// + " ?feature a geo:Feature . "//
// + " ?feature geo:hasGeometry ?point . "//
// + " ?point a geo:Point . "//
// + " ?point geo:asWKT ?wkt . "//
// + "}\n" + "WHERE { \n" + " ?feature a geo:Feature . "//
// + " ?feature geo:hasGeometry ?point . "//
// + " ?point a geo:Point . "//
// + " ?point geo:asWKT ?wkt . "//
// + "}";//
//
// final Update deleteUpdate = conn.prepareUpdate(QueryLanguage.SPARQL,
// sparqlDelete);
// deleteUpdate.execute();
//
// String queryString;
// TupleQuery tupleQuery;
// CountingResultHandler tupleHandler;
//
// // Find all stored points
// queryString = "PREFIX geo: <http://www.opengis.net/ont/geosparql#> "//
// + "PREFIX geof: <http://www.opengis.net/def/function/geosparql/> "//
// + "SELECT ?feature ?point ?wkt " //
// + "{" //
// + " ?feature a geo:Feature . "//
// + " ?feature geo:hasGeometry ?point . "//
// + " ?point a geo:Point . "//
// + " ?point geo:asWKT ?wkt . "//
// + "}";//
// tupleQuery = conn.prepareTupleQuery(QueryLanguage.SPARQL, queryString);
// tupleHandler = new CountingResultHandler();
// tupleQuery.evaluate(tupleHandler);
// log.info("Result count : " + tupleHandler.getCount());
// Validate.isTrue(tupleHandler.getCount() == 0);
// }
private static void createPCJ(final Configuration conf) throws RepositoryException, AccumuloException, AccumuloSecurityException, TableExistsException, PcjException, InferenceEngineException, NumberFormatException, UnknownHostException, SailException, TableNotFoundException {
final Configuration config = new AccumuloRdfConfiguration(conf);
config.set(ConfigUtils.USE_PCJ, "false");
SailRepository repository = null;
SailRepositoryConnection conn = null;
try {
final Sail extSail = RyaSailFactory.getInstance(config);
repository = new SailRepository(extSail);
conn = repository.getConnection();
final String queryString1 = //
"" + //
"SELECT ?e ?c ?l ?o " + //
"{" + //
" ?c a ?e . " + //
" ?e <http://www.w3.org/2000/01/rdf-schema#label> ?l . " + //
" ?e <uri:talksTo> ?o . " + //
"}";
final String queryString2 = //
"" + //
"SELECT ?e ?c ?l ?o " + //
"{" + //
" ?e a ?c . " + //
" ?e <http://www.w3.org/2000/01/rdf-schema#label> ?l . " + //
" ?e <uri:talksTo> ?o . " + //
"}";
URI obj, subclass, talksTo;
final URI person = new URIImpl("urn:people:alice");
final URI feature = new URIImpl("urn:feature");
final URI sub = new URIImpl("uri:entity");
subclass = new URIImpl("uri:class");
obj = new URIImpl("uri:obj");
talksTo = new URIImpl("uri:talksTo");
conn.add(person, RDF.TYPE, sub);
conn.add(feature, RDF.TYPE, sub);
conn.add(sub, RDF.TYPE, subclass);
conn.add(sub, RDFS.LABEL, new LiteralImpl("label"));
conn.add(sub, talksTo, obj);
final String tablename1 = RYA_TABLE_PREFIX + "INDEX_1";
final String tablename2 = RYA_TABLE_PREFIX + "INDEX_2";
final Connector accCon = new MockInstance(INSTANCE).getConnector("root", new PasswordToken("".getBytes(StandardCharsets.UTF_8)));
new PcjTables().createAndPopulatePcj(conn, accCon, tablename1, queryString1, new String[] { "e", "c", "l", "o" }, Optional.<PcjVarOrderFactory>absent());
new PcjTables().createAndPopulatePcj(conn, accCon, tablename2, queryString2, new String[] { "e", "c", "l", "o" }, Optional.<PcjVarOrderFactory>absent());
} catch (final RyaDAOException e) {
throw new Error("While creating PCJ tables.", e);
} finally {
closeQuietly(conn);
closeQuietly(repository);
}
}
use of org.openrdf.model.impl.URIImpl in project incubator-rya by apache.
the class ProspectorServiceEvalStatsDAOTest method testNoAuthsCount.
@Test
public void testNoAuthsCount() throws Exception {
// Load some data into a mock Accumulo and run the Prospector MapReduce job.
final Instance mock = new MockInstance("accumulo");
final Connector connector = mock.getConnector("user", new PasswordToken("pass"));
final String outtable = "rya_prospects";
if (connector.tableOperations().exists(outtable)) {
connector.tableOperations().delete(outtable);
}
connector.tableOperations().create(outtable);
connector.securityOperations().createUser("user", "pass".getBytes(), new Authorizations("U", "FOUO"));
final AccumuloRyaDAO ryaDAO = new AccumuloRyaDAO();
ryaDAO.setConnector(connector);
ryaDAO.init();
ryaDAO.add(new RyaStatement(new RyaURI("urn:gem:etype#1234"), new RyaURI("urn:gem#pred"), new RyaType("mydata1")));
ryaDAO.add(new RyaStatement(new RyaURI("urn:gem:etype#1234"), new RyaURI("urn:gem#pred"), new RyaType("mydata2")));
ryaDAO.add(new RyaStatement(new RyaURI("urn:gem:etype#1234"), new RyaURI("urn:gem#pred"), new RyaType("12")));
ryaDAO.add(new RyaStatement(new RyaURI("urn:gem:etype#1235"), new RyaURI("urn:gem#pred"), new RyaType(XMLSchema.INTEGER, "12")));
ryaDAO.add(new RyaStatement(new RyaURI("urn:gem:etype#1235"), new RyaURI("urn:gem#pred1"), new RyaType("12")));
final String confFile = "stats_cluster_config.xml";
final Path confPath = new Path(getClass().getClassLoader().getResource(confFile).toString());
final String[] args = { confPath.toString() };
ToolRunner.run(new Prospector(), args);
ryaDAO.destroy();
final Configuration conf = new Configuration();
conf.addResource(confPath);
final AccumuloRdfConfiguration rdfConf = new AccumuloRdfConfiguration(conf);
final ProspectorServiceEvalStatsDAO evalDao = new ProspectorServiceEvalStatsDAO(connector, rdfConf);
evalDao.init();
// Get the cardinality of the 'urn:gem#pred' predicate.
List<Value> values = new ArrayList<Value>();
values.add(new URIImpl("urn:gem#pred"));
double count = evalDao.getCardinality(rdfConf, RdfEvalStatsDAO.CARDINALITY_OF.PREDICATE, values);
assertEquals(4.0, count, 0.001);
// Get the cardinality of the 'mydata1' object.
values = new ArrayList<Value>();
values.add(new LiteralImpl("mydata1"));
count = evalDao.getCardinality(rdfConf, RdfEvalStatsDAO.CARDINALITY_OF.OBJECT, values);
assertEquals(1.0, count, 0.001);
// Get the cardinality of the 'mydata3' object.
values = new ArrayList<Value>();
values.add(new LiteralImpl("mydata3"));
count = evalDao.getCardinality(rdfConf, RdfEvalStatsDAO.CARDINALITY_OF.OBJECT, values);
assertEquals(-1.0, count, 0.001);
}
use of org.openrdf.model.impl.URIImpl in project incubator-rya by apache.
the class ProspectorServiceEvalStatsDAOTest method testCount.
@Test
public void testCount() throws Exception {
// Load some data into a mock Accumulo and run the Prospector MapReduce job.
final Instance mock = new MockInstance("accumulo");
final Connector connector = mock.getConnector("user", new PasswordToken("pass"));
final String outtable = "rya_prospects";
if (connector.tableOperations().exists(outtable)) {
connector.tableOperations().delete(outtable);
}
connector.tableOperations().create(outtable);
final AccumuloRyaDAO ryaDAO = new AccumuloRyaDAO();
ryaDAO.setConnector(connector);
ryaDAO.init();
ryaDAO.add(new RyaStatement(new RyaURI("urn:gem:etype#1234"), new RyaURI("urn:gem#pred"), new RyaType("mydata1")));
ryaDAO.add(new RyaStatement(new RyaURI("urn:gem:etype#1234"), new RyaURI("urn:gem#pred"), new RyaType("mydata2")));
ryaDAO.add(new RyaStatement(new RyaURI("urn:gem:etype#1234"), new RyaURI("urn:gem#pred"), new RyaType("12")));
ryaDAO.add(new RyaStatement(new RyaURI("urn:gem:etype#1235"), new RyaURI("urn:gem#pred"), new RyaType(XMLSchema.INTEGER, "12")));
ryaDAO.add(new RyaStatement(new RyaURI("urn:gem:etype#1235"), new RyaURI("urn:gem#pred1"), new RyaType("12")));
final String confFile = "stats_cluster_config.xml";
final Path confPath = new Path(getClass().getClassLoader().getResource(confFile).toString());
final String[] args = { confPath.toString() };
ToolRunner.run(new Prospector(), args);
ryaDAO.destroy();
final Configuration conf = new Configuration();
conf.addResource(confPath);
final AccumuloRdfConfiguration rdfConf = new AccumuloRdfConfiguration(conf);
rdfConf.setAuths("U", "FOUO");
final ProspectorServiceEvalStatsDAO evalDao = new ProspectorServiceEvalStatsDAO(connector, rdfConf);
evalDao.init();
// Get the cardinality of the 'urn:gem#pred' predicate.
List<Value> values = new ArrayList<Value>();
values.add(new URIImpl("urn:gem#pred"));
double count = evalDao.getCardinality(rdfConf, CARDINALITY_OF.PREDICATE, values);
assertEquals(4.0, count, 0.001);
// Get the cardinality of the 'mydata1' object.
values = new ArrayList<Value>();
values.add(new LiteralImpl("mydata1"));
count = evalDao.getCardinality(rdfConf, RdfEvalStatsDAO.CARDINALITY_OF.OBJECT, values);
assertEquals(1.0, count, 0.001);
// Get the cardinality of the 'mydata3' object.
values = new ArrayList<Value>();
values.add(new LiteralImpl("mydata3"));
count = evalDao.getCardinality(rdfConf, RdfEvalStatsDAO.CARDINALITY_OF.OBJECT, values);
assertEquals(-1.0, count, 0.001);
}
use of org.openrdf.model.impl.URIImpl in project incubator-rya by apache.
the class MongoDBQueryEngineIT method bindingSetsQuery.
@SuppressWarnings("unchecked")
@Test
public void bindingSetsQuery() throws Exception {
final MongoDBRyaDAO dao = new MongoDBRyaDAO();
try (final MongoDBQueryEngine engine = new MongoDBQueryEngine()) {
engine.setConf(conf);
// Add data.
dao.setConf(conf);
dao.init();
dao.add(getStatement("u:a", "u:tt", "u:b"));
dao.add(getStatement("u:a", "u:tt", "u:c"));
// Run the test.
final RyaStatement s = getStatement("u:a", null, null);
final MapBindingSet bs1 = new MapBindingSet();
bs1.addBinding("foo", new URIImpl("u:x"));
final Map.Entry<RyaStatement, BindingSet> e1 = new RdfCloudTripleStoreUtils.CustomEntry<>(s, bs1);
final Collection<Entry<RyaStatement, BindingSet>> stmts1 = Lists.newArrayList(e1);
assertEquals(2, size(engine.queryWithBindingSet(stmts1, conf)));
final MapBindingSet bs2 = new MapBindingSet();
bs2.addBinding("foo", new URIImpl("u:y"));
final Map.Entry<RyaStatement, BindingSet> e2 = new RdfCloudTripleStoreUtils.CustomEntry<>(s, bs2);
final Collection<Entry<RyaStatement, BindingSet>> stmts2 = Lists.newArrayList(e1, e2);
assertEquals(4, size(engine.queryWithBindingSet(stmts2, conf)));
} finally {
dao.destroy();
}
}
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