Examples with Repository org.openrdf.repository.Repository used on opensource projects

Example 16 with Repository

use of org.openrdf.repository.Repository in project incubator-rya by apache.

the class ConformanceTest method runTest.

/**
 * Verify that we can infer the correct triples or detect an inconsistency.
 * @param   conf    Specifies working directory, etc.
 * @param   OwlTest   Contains premise/conclusion graphs, will store result
 * @return  Return value of the MapReduce job
 */
int runTest(final Configuration conf, final String[] args, final OwlTest test) throws Exception {
    conf.setInt(MRReasoningUtils.STEP_PROP, 0);
    conf.setInt(MRReasoningUtils.SCHEMA_UPDATE_PROP, 0);
    conf.setBoolean(MRReasoningUtils.DEBUG_FLAG, true);
    conf.setBoolean(MRReasoningUtils.OUTPUT_FLAG, true);
    // Connect to MiniAccumulo and load the test
    final Repository repo = MRReasoningUtils.getRepository(conf);
    repo.initialize();
    final RepositoryConnection conn = repo.getConnection();
    conn.clear();
    conn.add(new StringReader(test.premise), "", RDFFormat.RDFXML);
    conn.close();
    repo.shutDown();
    // Run the reasoner
    final ReasoningDriver reasoner = new ReasoningDriver();
    final int result = ToolRunner.run(conf, reasoner, args);
    test.success = (result == 0);
    // Inconsistency test: successful if determined inconsistent
    if (test.types.contains(TEST_INCONSISTENCY)) {
        test.success = test.success && reasoner.hasInconsistencies();
    }
    // Consistency test: successful if determined consistent
    if (test.types.contains(TEST_CONSISTENCY)) {
        test.success = test.success && !reasoner.hasInconsistencies();
    }
    // Other types: we'll need to look at the inferred triples/schema
    if (test.types.contains(TEST_NONENTAILMENT) || test.types.contains(TEST_ENTAILMENT)) {
        System.out.println("Reading inferred triples...");
        // Read in the inferred triples from HDFS:
        final Schema schema = MRReasoningUtils.loadSchema(conf);
        final FileSystem fs = FileSystem.get(conf);
        final Path configuredPath = MRReasoningUtils.getOutputPath(conf, "final");
        final Path path = PathUtils.cleanHadoopPath(configuredPath, conf);
        final OutputCollector inferred = new OutputCollector();
        final NTriplesParser parser = new NTriplesParser();
        parser.setRDFHandler(inferred);
        if (fs.isDirectory(path)) {
            for (final FileStatus status : fs.listStatus(path)) {
                final String s = status.getPath().getName();
                if (s.startsWith(MRReasoningUtils.INCONSISTENT_OUT) || s.startsWith(MRReasoningUtils.DEBUG_OUT)) {
                    continue;
                }
                final BufferedReader br = new BufferedReader(new InputStreamReader(fs.open(status.getPath()), StandardCharsets.UTF_8));
                parser.parse(br, "");
                br.close();
            }
        }
        MRReasoningUtils.deleteIfExists(conf, "final");
        test.inferred.addAll(inferred.triples);
        // Entailment test: successful if expected triples were inferred
        if (test.types.contains(TEST_ENTAILMENT)) {
            // the schema reasoner
            for (final Statement st : test.expected) {
                final Fact fact = new Fact(st);
                if (!test.inferred.contains(st) && !triviallyTrue(fact.getTriple(), schema) && !schema.containsTriple(fact.getTriple())) {
                    test.error.add(st);
                }
            }
        }
        // Non-entailment test: failure if non-expected triples inferred
        if (test.types.contains(TEST_NONENTAILMENT)) {
            for (final Statement st : test.unexpected) {
                final Fact fact = new Fact(st);
                if (test.inferred.contains(st) || schema.containsTriple(fact.getTriple())) {
                    test.error.add(st);
                }
            }
        }
        test.success = test.success && test.error.isEmpty();
    }
    conf.setBoolean(MRReasoningUtils.DEBUG_FLAG, false);
    MRReasoningUtils.clean(conf);
    return result;
}

Example 17 with Repository

use of org.openrdf.repository.Repository in project backstage by zepheira.

the class DataLoadingUtilities method loadDataFromStream.

public static void loadDataFromStream(InputStream stream, String sourceURL, String lang, Sail sail) throws Exception {
    RepoSailTuple rs = createMemoryRepository(null);
    Repository r = rs.repository;
    lang = lang.toLowerCase();
    if ("exhibit/json".equals(lang)) {
        Properties properties = new Properties();
        BabelReader reader = new ExhibitJsonReader();
        try {
            if (reader.takesReader()) {
                InputStreamReader isr = new InputStreamReader(stream);
                reader.read(isr, sail, properties, Locale.getDefault());
            } else {
                reader.read(stream, sail, properties, Locale.getDefault());
            }
        } finally {
            stream.close();
        }
    } else {
        RDFParser parser = null;
        if ("rdfxml".equals(lang)) {
            parser = new RDFXMLParser(r.getValueFactory());
        } else if ("n3".equals(lang) || "turtle".equals(lang)) {
            parser = new TurtleParser(r.getValueFactory());
        } else if ("ntriples".equals(lang)) {
            parser = new NTriplesParser(r.getValueFactory());
        }
        try {
            SailConnection c = null;
            try {
                c = sail.getConnection();
                BNodeConverterStatementHandler handler = new BNodeConverterStatementHandler(c);
                parser.setRDFHandler(handler);
                parser.setParseErrorListener(new LoggingParseErrorListener(sourceURL));
                parser.setVerifyData(false);
                parser.setStopAtFirstError(false);
                parser.parse(stream, sourceURL);
                c.commit();
                _logger.info("Read " + handler.m_count + " statements from '" + sourceURL + "'");
            } catch (RepositoryException e) {
                if (c != null)
                    c.rollback();
            } finally {
                if (c != null)
                    c.close();
            }
        } catch (Exception e) {
            throw new ModelReadFromFileException("Failed to read data from '" + sourceURL + "'", e);
        } finally {
            stream.close();
        }
    }
}

Example 18 with Repository

use of org.openrdf.repository.Repository in project stanbol by apache.

the class SesameYardComponent method removedService.

@Override
@SuppressWarnings("unchecked")
public void removedService(ServiceReference serviceReference, Object o) {
    if (serviceReference.equals(repoServiceReference)) {
        log.info(" - currently used Repository was removed (ref: {})", serviceReference);
        unregisterSesameYard();
    }
    ServiceReference[] serviceRefs = repositoryTracker.getServiceReferences();
    List<ServiceReference> others = serviceRefs == null ? Collections.<ServiceReference>emptyList() : Arrays.asList(serviceRefs);
    if (others.size() > 1) {
        // sort by priority
        Collections.sort(others);
    }
    boolean registered = false;
    for (Iterator<ServiceReference> refs = others.iterator(); !registered && refs.hasNext(); ) {
        ServiceReference ref = refs.next();
        Repository repo = (Repository) repositoryTracker.getService(ref);
        if (repo != null) {
            log.info(" - re-register Yard with other available repository {}", ref);
            registerSesameYard(ref, repo);
            registered = true;
        }
    }
    bundleContext.ungetService(serviceReference);
}