Examples with CreditName org.orcid.jaxb.model.common_v2.CreditName used on opensource projects

Example 31 with CreditName

use of org.orcid.jaxb.model.common_v2.CreditName in project ORCID-Source by ORCID.

the class SetUpClientsAndUsers method clearRegistry.

private boolean clearRegistry(OrcidProfile existingProfile, Map<String, String> params) {
    if (existingProfile != null) {
        String orcid = params.get(ORCID);
        String email = params.get(EMAIL);
        // exception
        if (existingProfile.getOrcidBio() == null || existingProfile.getOrcidBio().getContactDetails() == null || existingProfile.getOrcidBio().getContactDetails().retrievePrimaryEmail() == null || !email.equals(existingProfile.getOrcidBio().getContactDetails().retrievePrimaryEmail().getValue())) {
            throw new ApplicationException("User with email " + params.get(EMAIL) + " must have orcid id '" + orcid + "' but it is '" + existingProfile.getOrcidId() + "'");
        }
        // Check if the profile have the same password, if not, update the
        // password
        String encryptedPassword = encryptionManager.hashForInternalUse(params.get(PASSWORD));
        if (!encryptedPassword.equals(existingProfile.getPassword())) {
            existingProfile.setPassword(params.get(PASSWORD));
            orcidProfileManager.updatePasswordInformation(existingProfile);
        }
        // Set default names
        Name name = new Name();
        name.setCreditName(new CreditName(params.get(CREDIT_NAME)));
        name.setGivenNames(new GivenNames(params.get(GIVEN_NAMES)));
        name.setFamilyName(new FamilyName(params.get(FAMILY_NAMES)));
        name.setVisibility(org.orcid.jaxb.model.common_v2.Visibility.fromValue(OrcidVisibilityDefaults.NAMES_DEFAULT.getVisibility().value()));
        if (recordNameManager.exists(orcid)) {
            recordNameManager.updateRecordName(orcid, name);
        } else {
            recordNameManager.createRecordName(orcid, name);
        }
        profileDao.updatePreferences(orcid, true, true, true, true, org.orcid.jaxb.model.common_v2.Visibility.PUBLIC, true, 1f);
        // Set default bio
        org.orcid.jaxb.model.record_v2.Biography bio = biographyManager.getBiography(orcid, 0L);
        if (bio == null || bio.getContent() == null) {
            bio = new org.orcid.jaxb.model.record_v2.Biography(params.get(BIO));
            bio.setVisibility(org.orcid.jaxb.model.common_v2.Visibility.fromValue(OrcidVisibilityDefaults.BIOGRAPHY_DEFAULT.getVisibility().value()));
            biographyManager.createBiography(orcid, bio);
        } else {
            bio.setContent(params.get(BIO));
            bio.setVisibility(org.orcid.jaxb.model.common_v2.Visibility.fromValue(OrcidVisibilityDefaults.BIOGRAPHY_DEFAULT.getVisibility().value()));
            biographyManager.updateBiography(orcid, bio);
        }
        // Remove other names
        List<OtherNameEntity> otherNames = otherNameDao.getOtherNames(orcid, 0L);
        if (otherNames != null && !otherNames.isEmpty()) {
            for (OtherNameEntity otherName : otherNames) {
                otherNameDao.deleteOtherName(otherName);
            }
        }
        // Remove keywords
        List<ProfileKeywordEntity> keywords = profileKeywordDao.getProfileKeywors(orcid, 0L);
        if (keywords != null && !keywords.isEmpty()) {
            for (ProfileKeywordEntity keyword : keywords) {
                profileKeywordDao.deleteProfileKeyword(keyword);
            }
        }
        //Remove researcher urls
        List<ResearcherUrlEntity> rUrls = researcherUrlDao.getResearcherUrls(orcid, 0L);
        if (rUrls != null && !rUrls.isEmpty()) {
            for (ResearcherUrlEntity rUrl : rUrls) {
                researcherUrlDao.deleteResearcherUrl(orcid, rUrl.getId());
            }
        }
        // Remove external ids
        List<ExternalIdentifierEntity> extIds = externalIdentifierDao.getExternalIdentifiers(orcid, System.currentTimeMillis());
        if (extIds != null && !extIds.isEmpty()) {
            for (ExternalIdentifierEntity extId : extIds) {
                externalIdentifierDao.removeExternalIdentifier(orcid, extId.getId());
            }
        }
        // Remove addresses
        List<AddressEntity> addresses = addressDao.getAddresses(orcid, 0L);
        if (addresses != null && !addresses.isEmpty()) {
            for (AddressEntity address : addresses) {
                addressDao.deleteAddress(orcid, address.getId());
            }
        }
        // Remove emails
        List<EmailEntity> emails = emailDao.findByOrcid(orcid);
        if (emails != null && !emails.isEmpty()) {
            for (EmailEntity rc2Email : emails) {
                if (!params.get(EMAIL).equals(rc2Email.getId())) {
                    emailDao.removeEmail(orcid, rc2Email.getId());
                }
            }
        }
        // Remove notifications
        List<NotificationEntity> notifications = notificationDao.findByOrcid(orcid, true, 0, 10000);
        if (notifications != null && !notifications.isEmpty()) {
            for (NotificationEntity notification : notifications) {
                notificationDao.deleteNotificationItemByNotificationId(notification.getId());
                notificationDao.deleteNotificationWorkByNotificationId(notification.getId());
                notificationDao.deleteNotificationById(notification.getId());
            }
        }
        // Remove works
        List<MinimizedWorkEntity> works = workDao.findWorks(orcid, 0L);
        if (works != null && !works.isEmpty()) {
            for (MinimizedWorkEntity work : works) {
                workDao.removeWork(orcid, work.getId());
            }
        }
        // Remove affiliations
        List<OrgAffiliationRelationEntity> affiliations = orgAffiliationRelationDao.getByUser(orcid);
        if (affiliations != null && !affiliations.isEmpty()) {
            for (OrgAffiliationRelationEntity affiliation : affiliations) {
                orgAffiliationRelationDao.remove(affiliation.getId());
            }
        }
        // Remove fundings
        List<ProfileFundingEntity> fundings = profileFundingDao.getByUser(orcid);
        if (fundings != null && !fundings.isEmpty()) {
            for (ProfileFundingEntity funding : fundings) {
                profileFundingDao.removeProfileFunding(orcid, funding.getId());
            }
        }
        // Remove peer reviews
        List<PeerReviewEntity> peerReviews = peerReviewDao.getByUser(orcid);
        if (peerReviews != null && !peerReviews.isEmpty()) {
            for (PeerReviewEntity peerReview : peerReviews) {
                peerReviewDao.removePeerReview(orcid, peerReview.getId());
            }
        }
        // Remove 3d party links
        List<OrcidOauth2TokenDetail> tokenDetails = orcidOauth2TokenDetailDao.findByUserName(orcid);
        if (tokenDetails != null && !tokenDetails.isEmpty()) {
            for (OrcidOauth2TokenDetail token : tokenDetails) {
                orcidOauth2TokenDetailDao.remove(token.getId());
            }
        }
        //Unlock just in case it is locked
        profileDao.unlockProfile(orcid);
        return true;
    }
    return false;
}

Example 32 with CreditName

use of org.orcid.jaxb.model.common_v2.CreditName in project ORCID-Source by ORCID.

the class WorkToCiteprocTranslator method translateFromWorkMetadata.

/**
     * Use the ORCID work metadata to generate a *limited* citation. You'll most
     * likely get a title, doi, url, date and author.
     * 
     * Translates type according to https://docs.google.com/spreadsheets/d/
     * 1h4nTF6DKNEpWcGNQVMDwt0ea09qmkBnkWisxkJE-li4/edit#gid=754644608
     * 
     * Informed by mendley tranforms at
     * http://support.mendeley.com/customer/portal/articles/364144-csl-type-
     * mapping
     * 
     * See also:
     * http://docs.citationstyles.org/en/stable/specification.html#appendix-iii-
     * types http://members.orcid.org/api/supported-work-types datacite and
     * crossref mappings here:
     * https://github.com/lagotto/lagotto/blob/master/config/initializers/
     * constants.rb
     * @param creditName 
     * 
     * @param worktype
     * @return a CSLItemData, default CSLType.ARTICLE if cannot map type
     */
private CSLItemData translateFromWorkMetadata(Work work, String creditName) {
    CSLItemDataBuilder builder = new CSLItemDataBuilder();
    builder.title((work.getWorkTitle() != null) ? StringUtils.stripAccents(work.getWorkTitle().getTitle().getContent()) : "No Title");
    String doi = extractID(work, WorkExternalIdentifierType.DOI);
    String url = extractID(work, WorkExternalIdentifierType.URI);
    if (doi != null) {
        builder.DOI(doi);
    }
    if (url != null) {
        builder.URL(url);
    } else if (doi != null) {
        builder.URL("http://doi.org/" + doi);
    } else {
        url = extractID(work, WorkExternalIdentifierType.HANDLE);
        if (url != null) {
            builder.URL(url);
        }
    }
    if (work.getJournalTitle() != null) {
        builder.containerTitle(StringUtils.stripAccents(work.getJournalTitle().getContent()));
    }
    List<String> names = new ArrayList<String>();
    // TODO: Pass in credit name
    names.add(creditName);
    if (work.getWorkContributors() != null && work.getWorkContributors().getContributor() != null) {
        for (Contributor c : work.getWorkContributors().getContributor()) {
            if (c.getCreditName() != null && c.getCreditName().getContent() != null) {
                names.add(StringUtils.stripAccents(c.getCreditName().getContent()));
            }
        }
    }
    CSLNameBuilder name = new CSLNameBuilder();
    name.literal(Joiner.on(" and ").skipNulls().join(names));
    builder.author(name.build());
    // TODO: make it work with "Spring", "August", whatever...
    if (work.getPublicationDate() != null) {
        int year = 0;
        int month = 0;
        int day = 0;
        try {
            year = Integer.parseInt(work.getPublicationDate().getYear().getValue());
            month = Integer.parseInt(work.getPublicationDate().getMonth().getValue());
            day = Integer.parseInt(work.getPublicationDate().getDay().getValue());
        } catch (Exception e) {
        }
        if (year > 0 && month > 0 && day > 0) {
            builder.issued(year, month, day);
        } else if (year > 0 && month > 0) {
            builder.issued(year, month);
        } else if (year > 0) {
            builder.issued(year);
        }
    }
    switch(work.getWorkType()) {
        case ARTISTIC_PERFORMANCE:
            break;
        case BOOK:
            builder.type(CSLType.BOOK);
            break;
        case BOOK_CHAPTER:
            builder.type(CSLType.CHAPTER);
            break;
        case BOOK_REVIEW:
            builder.type(CSLType.REVIEW_BOOK);
            break;
        case CONFERENCE_ABSTRACT:
            builder.type(CSLType.PAPER_CONFERENCE);
            break;
        case CONFERENCE_PAPER:
            builder.type(CSLType.PAPER_CONFERENCE);
            break;
        case CONFERENCE_POSTER:
            builder.type(CSLType.PAPER_CONFERENCE);
            break;
        case DATA_SET:
            builder.type(CSLType.DATASET);
            break;
        case DICTIONARY_ENTRY:
            builder.type(CSLType.ENTRY_DICTIONARY);
            break;
        case DISSERTATION:
            builder.type(CSLType.THESIS);
            break;
        case ENCYCLOPEDIA_ENTRY:
            builder.type(CSLType.ENTRY_ENCYCLOPEDIA);
            break;
        case JOURNAL_ARTICLE:
            builder.type(CSLType.ARTICLE_JOURNAL);
            break;
        case MAGAZINE_ARTICLE:
            builder.type(CSLType.ARTICLE_MAGAZINE);
            break;
        case NEWSLETTER_ARTICLE:
            builder.type(CSLType.ARTICLE_NEWSPAPER);
            break;
        case NEWSPAPER_ARTICLE:
            builder.type(CSLType.ARTICLE_NEWSPAPER);
            break;
        case ONLINE_RESOURCE:
            builder.type(CSLType.WEBPAGE);
            break;
        case REPORT:
            builder.type(CSLType.REPORT);
            break;
        case WEBSITE:
            builder.type(CSLType.WEBPAGE);
            break;
        case WORKING_PAPER:
            builder.type(CSLType.ARTICLE);
            break;
        case DISCLOSURE:
        case EDITED_BOOK:
        case INVENTION:
        case JOURNAL_ISSUE:
        case LECTURE_SPEECH:
        case LICENSE:
        case MANUAL:
        case OTHER:
        case PATENT:
        case REGISTERED_COPYRIGHT:
        case RESEARCH_TECHNIQUE:
        case RESEARCH_TOOL:
        case SPIN_OFF_COMPANY:
        case STANDARDS_AND_POLICY:
        case SUPERVISED_STUDENT_PUBLICATION:
        case TECHNICAL_STANDARD:
        case TEST:
        case TRADEMARK:
        case TRANSLATION:
        case UNDEFINED:
        default:
            // builder.type(CSLType.ARTICLE);
            break;
    }
    return builder.build();
}

Example 33 with CreditName

use of org.orcid.jaxb.model.common_v2.CreditName in project ORCID-Source by ORCID.

the class Contributor method toFundingContributor.

public FundingContributor toFundingContributor() {
    FundingContributor c = new FundingContributor();
    if (this.getContributorRole() != null || this.getContributorSequence() != null) {
        FundingContributorAttributes ca = new FundingContributorAttributes();
        if (!PojoUtil.isEmpty(this.getContributorRole()))
            ca.setContributorRole(FundingContributorRole.fromValue(this.getContributorRole().getValue()));
        c.setContributorAttributes(ca);
    }
    if (this.getEmail() != null)
        c.setContributorEmail(new ContributorEmail(this.getEmail().getValue()));
    if (this.getOrcid() != null) {
        ContributorOrcid contributorOrcid = new ContributorOrcid(this.getOrcid().getValue());
        if (this.getUri() != null) {
            String uriString = this.getUri().getValue();
            if (StringUtils.isNotBlank(uriString)) {
                try {
                    URI uri = new URI(uriString);
                    contributorOrcid.setHost(uri.getHost());
                } catch (URISyntaxException e) {
                    throw new RuntimeException("Problem parsing contributor orcid uri", e);
                }
            }
        }
        contributorOrcid.setUri(this.getUri().getValue());
        c.setContributorOrcid(contributorOrcid);
    }
    if (this.getCreditName() != null) {
        CreditName cn = new CreditName(this.getCreditName().getValue());
        c.setCreditName(cn);
    }
    return c;
}

Example 34 with CreditName

use of org.orcid.jaxb.model.common_v2.CreditName in project ORCID-Source by ORCID.

the class ContributorUtilsTest method getFundingContributorWithOrcid.

private FundingContributors getFundingContributorWithOrcid() {
    ContributorOrcid contributorOrcid = new ContributorOrcid();
    contributorOrcid.setPath("0000-0003-4902-6327");
    contributorOrcid.setHost("orcid.org");
    contributorOrcid.setUri("http://orcid.org/0000-0003-4902-6327");
    FundingContributor contributor = new FundingContributor();
    contributor.setContributorOrcid(contributorOrcid);
    contributor.setContributorEmail(new ContributorEmail("never@show.this"));
    contributor.setCreditName(new CreditName("original credit name"));
    FundingContributors fundingContributors = new FundingContributors();
    fundingContributors.getContributor().add(contributor);
    return fundingContributors;
}

Example 35 with CreditName

use of org.orcid.jaxb.model.common_v2.CreditName in project ORCID-Source by ORCID.

the class ContributorUtils method filterContributorPrivateData.

public void filterContributorPrivateData(Work work) {
    if (work.getWorkContributors() != null && work.getWorkContributors().getContributor() != null) {
        for (Contributor contributor : work.getWorkContributors().getContributor()) {
            contributor.setContributorEmail(null);
            if (!PojoUtil.isEmpty(contributor.getContributorOrcid())) {
                String contributorOrcid = contributor.getContributorOrcid().getPath();
                if (profileEntityManager.orcidExists(contributorOrcid)) {
                    // contributor is an ORCID user - visibility of user's
                    // name in record must be taken into account
                    ProfileEntity profileEntity = profileEntityCacheManager.retrieve(contributorOrcid);
                    String publicContributorCreditName = cacheManager.getPublicCreditName(profileEntity);
                    CreditName creditName = new CreditName(publicContributorCreditName != null ? publicContributorCreditName : "");
                    contributor.setCreditName(creditName);
                }
            }
        }
    }
}