Examples with Source org.orcid.jaxb.model.common_v2.Source used on opensource projects

Example 16 with Source

use of org.orcid.jaxb.model.common_v2.Source in project ORCID-Source by ORCID.

the class WorkManagerImpl method updateWork.

@Override
@Transactional
public Work updateWork(String orcid, Work work, boolean isApiRequest) {
    WorkEntity workEntity = workDao.getWork(orcid, work.getPutCode());
    Visibility originalVisibility = workEntity.getVisibility();
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    //Save the original source
    String existingSourceId = workEntity.getSourceId();
    String existingClientSourceId = workEntity.getClientSourceId();
    if (isApiRequest) {
        activityValidator.validateWork(work, sourceEntity, false, isApiRequest, workEntity.getVisibility());
        long lastModifiedTime = getLastModified(orcid);
        List<Work> existingWorks = this.findWorks(orcid, lastModifiedTime);
        for (Work existing : existingWorks) {
            // Dont compare the updated peer review with the DB version
            if (!existing.getPutCode().equals(work.getPutCode())) {
                activityValidator.checkExternalIdentifiersForDuplicates(work.getExternalIdentifiers(), existing.getExternalIdentifiers(), existing.getSource(), sourceEntity);
            }
        }
    } else {
        //validate external ID vocab
        externalIDValidator.validateWorkOrPeerReview(work.getExternalIdentifiers());
    }
    orcidSecurityManager.checkSource(workEntity);
    jpaJaxbWorkAdapter.toWorkEntity(work, workEntity);
    workEntity.setVisibility(originalVisibility);
    //Be sure it doesn't overwrite the source
    workEntity.setSourceId(existingSourceId);
    workEntity.setClientSourceId(existingClientSourceId);
    workDao.merge(workEntity);
    workDao.flush();
    notificationManager.sendAmendEmail(orcid, AmendedSection.WORK, createItem(workEntity));
    return jpaJaxbWorkAdapter.toWork(workEntity);
}

Example 17 with Source

use of org.orcid.jaxb.model.common_v2.Source in project ORCID-Source by ORCID.

the class ResearcherUrlManagerImpl method updateResearcherUrl.

@Override
@Transactional
public ResearcherUrl updateResearcherUrl(String orcid, ResearcherUrl researcherUrl, boolean isApiRequest) {
    ResearcherUrlEntity updatedResearcherUrlEntity = researcherUrlDao.getResearcherUrl(orcid, researcherUrl.getPutCode());
    Visibility originalVisibility = Visibility.fromValue(updatedResearcherUrlEntity.getVisibility().value());
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    //Save the original source
    String existingSourceId = updatedResearcherUrlEntity.getSourceId();
    String existingClientSourceId = updatedResearcherUrlEntity.getClientSourceId();
    // Validate the researcher url
    PersonValidator.validateResearcherUrl(researcherUrl, sourceEntity, false, isApiRequest, originalVisibility);
    // Validate it is not duplicated
    List<ResearcherUrlEntity> existingResearcherUrls = researcherUrlDao.getResearcherUrls(orcid, getLastModified(orcid));
    for (ResearcherUrlEntity existing : existingResearcherUrls) {
        if (isDuplicated(existing, researcherUrl, sourceEntity)) {
            Map<String, String> params = new HashMap<String, String>();
            params.put("type", "researcher-url");
            params.put("value", researcherUrl.getUrlName());
            throw new OrcidDuplicatedElementException(params);
        }
    }
    orcidSecurityManager.checkSource(updatedResearcherUrlEntity);
    jpaJaxbResearcherUrlAdapter.toResearcherUrlEntity(researcherUrl, updatedResearcherUrlEntity);
    updatedResearcherUrlEntity.setLastModified(new Date());
    //Be sure it doesn't overwrite the source
    updatedResearcherUrlEntity.setSourceId(existingSourceId);
    updatedResearcherUrlEntity.setClientSourceId(existingClientSourceId);
    researcherUrlDao.merge(updatedResearcherUrlEntity);
    return jpaJaxbResearcherUrlAdapter.toResearcherUrl(updatedResearcherUrlEntity);
}

Example 18 with Source

use of org.orcid.jaxb.model.common_v2.Source in project ORCID-Source by ORCID.

the class JpaJaxbNotificationAdapterTest method testToNotificationAmendedEntity.

@Test
public void testToNotificationAmendedEntity() {
    NotificationAmended notification = new NotificationAmended();
    notification.setNotificationType(NotificationType.AMENDED);
    Source source = new Source();
    notification.setSource(source);
    SourceClientId clientId = new SourceClientId();
    source.setSourceClientId(clientId);
    clientId.setPath("APP-5555-5555-5555-5555");
    Items activities = new Items();
    notification.setItems(activities);
    Item activity = new Item();
    activities.getItems().add(activity);
    activity.setItemType(ItemType.WORK);
    activity.setItemName("Latest Research Article");
    ExternalID extId = new ExternalID();
    activity.setExternalIdentifier(extId);
    extId.setType("doi");
    extId.setValue("1234/abc123");
    NotificationEntity notificationEntity = jpaJaxbNotificationAdapter.toNotificationEntity(notification);
    assertTrue(notificationEntity instanceof NotificationAmendedEntity);
    NotificationAmendedEntity notificationAmendedEntity = (NotificationAmendedEntity) notificationEntity;
    assertNotNull(notificationEntity);
    assertEquals(NotificationType.AMENDED, notificationEntity.getNotificationType());
    // Source
    assertNull(notificationAmendedEntity.getSourceId());
    assertNull(notificationAmendedEntity.getClientSourceId());
    assertNull(notificationAmendedEntity.getElementSourceId());
}

Example 19 with Source

use of org.orcid.jaxb.model.common_v2.Source in project ORCID-Source by ORCID.

the class JpaJaxbNotificationAdapterTest method testToNotificationPermissionEntity.

@Test
public void testToNotificationPermissionEntity() {
    NotificationPermission notification = new NotificationPermission();
    notification.setNotificationType(NotificationType.PERMISSION);
    String authorizationUrlString = "https://orcid.org/oauth/authorize?client_id=APP-U4UKCNSSIM1OCVQY&response_type=code&scope=/orcid-works/create&redirect_uri=http://somethirdparty.com";
    AuthorizationUrl url = new AuthorizationUrl();
    notification.setAuthorizationUrl(url);
    notification.setNotificationIntro("This is the intro");
    notification.setNotificationSubject("This is the subject");
    Source source = new Source();
    notification.setSource(source);
    SourceClientId clientId = new SourceClientId();
    source.setSourceClientId(clientId);
    clientId.setPath("APP-5555-5555-5555-5555");
    url.setUri(authorizationUrlString);
    Items activities = new Items();
    notification.setItems(activities);
    Item activity = new Item();
    activities.getItems().add(activity);
    activity.setItemType(ItemType.WORK);
    activity.setItemName("Latest Research Article");
    ExternalID extId = new ExternalID();
    activity.setExternalIdentifier(extId);
    extId.setType("doi");
    extId.setValue("1234/abc123");
    NotificationEntity notificationEntity = jpaJaxbNotificationAdapter.toNotificationEntity(notification);
    assertTrue(notificationEntity instanceof NotificationAddItemsEntity);
    NotificationAddItemsEntity addActivitiesEntity = (NotificationAddItemsEntity) notificationEntity;
    assertNotNull(notificationEntity);
    assertEquals(NotificationType.PERMISSION, notificationEntity.getNotificationType());
    assertEquals(authorizationUrlString, addActivitiesEntity.getAuthorizationUrl());
    assertEquals(notification.getNotificationIntro(), notificationEntity.getNotificationIntro());
    assertEquals(notification.getNotificationSubject(), notificationEntity.getNotificationSubject());
    // Source
    assertNull(notificationEntity.getSourceId());
    assertNull(notificationEntity.getClientSourceId());
    assertNull(notificationEntity.getElementSourceId());
    Set<NotificationItemEntity> activityEntities = addActivitiesEntity.getNotificationItems();
    assertNotNull(activityEntities);
    assertEquals(1, activityEntities.size());
    NotificationItemEntity activityEntity = activityEntities.iterator().next();
    assertEquals(ItemType.WORK, activityEntity.getItemType());
    assertEquals("Latest Research Article", activityEntity.getItemName());
    assertEquals("DOI", activityEntity.getExternalIdType());
    assertEquals("1234/abc123", activityEntity.getExternalIdValue());
}

Example 20 with Source

use of org.orcid.jaxb.model.common_v2.Source in project ORCID-Source by ORCID.

the class EmailMessageSenderTest method testCreateDigest.

@Test
public void testCreateDigest() throws IOException {
    OrcidProfile orcidProfile = new OrcidProfile();
    OrcidBio orcidBio = new OrcidBio();
    orcidProfile.setOrcidBio(orcidBio);
    PersonalDetails personalDetails = new PersonalDetails();
    orcidBio.setPersonalDetails(personalDetails);
    personalDetails.setGivenNames(new GivenNames("John"));
    personalDetails.setFamilyName(new FamilyName("Watson"));
    OrcidInternal orcidInternal = new OrcidInternal();
    Preferences preferences = new Preferences();
    orcidProfile.setOrcidInternal(orcidInternal);
    orcidInternal.setPreferences(preferences);
    preferences.setSendEmailFrequencyDays("7.0");
    List<Notification> notifications = new ArrayList<>();
    NotificationPermission notification1 = new NotificationPermission();
    notification1.setPutCode(1L);
    Items activities1 = new Items();
    notification1.setItems(activities1);
    activities1.getItems().add(createActivity(ItemType.WORK, "Work 1", "123446/67654"));
    activities1.getItems().add(createActivity(ItemType.WORK, "Work 2", "http://dx.doi.org/123446/67655"));
    notification1.setCreatedDate(DateUtils.convertToXMLGregorianCalendar("2014-07-10T13:39:31"));
    notification1.setAuthorizationUrl(new AuthorizationUrl("https://thirdparty.com/add-to-orcid/12345"));
    Source source1 = new Source();
    source1.setSourceName(new SourceName("Super Institution 1"));
    source1.setSourceClientId(new SourceClientId("APP-5555-5555-5555-5555"));
    notification1.setSource(source1);
    notifications.add(notification1);
    NotificationPermission notification2 = new NotificationPermission();
    notification2.setPutCode(2L);
    Items activities2 = new Items();
    notification2.setItems(activities2);
    activities2.getItems().add(createActivity(ItemType.EMPLOYMENT, "Employment 1 ", "12345/abc"));
    notification2.setCreatedDate(DateUtils.convertToXMLGregorianCalendar("2014-08-17T10:22:15"));
    notification2.setAuthorizationUrl(new AuthorizationUrl("https://thirdparty.com/add-to-orcid/abc"));
    Source source2 = new Source();
    source2.setSourceName(new SourceName("Super Institution 1"));
    source2.setSourceClientId(new SourceClientId("APP-5555-5555-5555-5555"));
    notification2.setSource(source2);
    notifications.add(notification2);
    NotificationPermission notification3 = new NotificationPermission();
    notification3.setPutCode(3L);
    Items activities3 = new Items();
    notification3.setItems(activities3);
    activities3.getItems().add(createActivity(ItemType.WORK, "Work 3", "12345/def"));
    activities3.getItems().add(createActivity(ItemType.WORK, "Work 4", "12345/ghi"));
    notification3.setCreatedDate(DateUtils.convertToXMLGregorianCalendar("2014-07-10T08:53:56"));
    notification3.setAuthorizationUrl(new AuthorizationUrl("https://thirdparty.com/add-to-orcid/def"));
    Source source3 = new Source();
    source3.setSourceName(new SourceName("Lovely Publisher 1"));
    notification3.setSource(source3);
    source3.setSourceClientId(new SourceClientId("APP-ABCD-ABCD-ABCD-ABCD"));
    notifications.add(notification3);
    NotificationCustom notification4 = new NotificationCustom();
    notification4.setPutCode(4L);
    notification4.setSubject("We have release a new messaging feature");
    notification4.setCreatedDate(DateUtils.convertToXMLGregorianCalendar("2014-07-10T08:53:56"));
    notifications.add(notification4);
    NotificationCustom notification5 = new NotificationCustom();
    notification5.setPutCode(5L);
    notification5.setSubject("The ORCID registry is now available in Orc");
    notification5.setCreatedDate(DateUtils.convertToXMLGregorianCalendar("2014-07-11T06:42:18"));
    notifications.add(notification5);
    NotificationAmended notification6 = new NotificationAmended();
    notification6.setPutCode(6L);
    notification6.setSubject("Amended by member");
    notification6.setAmendedSection(AmendedSection.FUNDING);
    notification6.setCreatedDate(DateUtils.convertToXMLGregorianCalendar("2014-07-12T18:44:36"));
    notification6.setSource(source3);
    notifications.add(notification6);
    EmailMessage emailMessage = emailMessageSender.createDigest(orcidProfile, notifications, Locale.ENGLISH);
    assertNotNull(emailMessage);
    String expectedBodyText = IOUtils.toString(getClass().getResourceAsStream("example_digest_email_body.txt"));
    String expectedBodyHtml = IOUtils.toString(getClass().getResourceAsStream("example_digest_email_body.html"));
    assertTrue(expectedBodyText.contains("Lovely Publisher 1 has updated recent funding on your ORCID record."));
    assertTrue(expectedBodyHtml.contains("Lovely Publisher 1 has updated recent funding on your ORCID record."));
    assertTrue(expectedBodyText.contains("Super Institution 1: Request to add items"));
    assertTrue(expectedBodyHtml.contains("Super Institution 1: Request to add items"));
    assertTrue(expectedBodyText.contains("/action"));
    assertTrue(expectedBodyHtml.contains("/action"));
    assertEquals("[ORCID] John Watson you have 6 new notifications", emailMessage.getSubject());
}