Examples with OrcidHistory org.orcid.jaxb.model.message.OrcidHistory used on opensource projects

Example 6 with OrcidHistory

use of org.orcid.jaxb.model.message.OrcidHistory in project ORCID-Source by ORCID.

the class OrcidProfileManagerImpl method reactivateOrcidProfile.

/**
     * Reactivate an inactive profile
     * */
public OrcidProfile reactivateOrcidProfile(OrcidProfile deactivatedOrcidProfile) {
    OrcidHistory deactivatedOrcidHistory = deactivatedOrcidProfile.getOrcidHistory();
    deactivatedOrcidHistory.setDeactivationDate(null);
    OrcidProfile profileToReturn = updateOrcidProfile(deactivatedOrcidProfile);
    notificationManager.sendAmendEmail(profileToReturn, AmendedSection.UNKNOWN);
    return profileToReturn;
}

Example 7 with OrcidHistory

use of org.orcid.jaxb.model.message.OrcidHistory in project ORCID-Source by ORCID.

the class OrcidProfileManagerImpl method setAffiliationPrivacy.

private void setAffiliationPrivacy(OrcidProfile updatedOrcidProfile, Visibility defaultAffiliationVisibility) {
    OrcidHistory orcidHistory = updatedOrcidProfile.getOrcidHistory();
    boolean isClaimed = orcidHistory != null ? orcidHistory.getClaimed().isValue() : false;
    OrcidActivities incomingActivities = updatedOrcidProfile.getOrcidActivities();
    if (incomingActivities != null) {
        Affiliations incomingWorks = incomingActivities.getAffiliations();
        if (incomingWorks != null) {
            setAffiliationPrivacy(incomingWorks, defaultAffiliationVisibility, isClaimed);
        }
    }
}

Example 8 with OrcidHistory

use of org.orcid.jaxb.model.message.OrcidHistory in project ORCID-Source by ORCID.

the class SourceInActivitiesTest method getMinimalOrcidProfile.

private OrcidProfile getMinimalOrcidProfile() {
    OrcidProfile profile = new OrcidProfile();
    OrcidBio bio = new OrcidBio();
    ContactDetails contactDetails = new ContactDetails();
    contactDetails.addOrReplacePrimaryEmail(new org.orcid.jaxb.model.message.Email(System.currentTimeMillis() + "@user.com"));
    Preferences preferences = new Preferences();
    preferences.setSendChangeNotifications(new SendChangeNotifications(true));
    preferences.setSendOrcidNews(new SendOrcidNews(true));
    preferences.setSendMemberUpdateRequests(true);
    preferences.setSendEmailFrequencyDays("1");
    preferences.setActivitiesVisibilityDefault(new ActivitiesVisibilityDefault(Visibility.fromValue("public")));
    PersonalDetails personalDetails = new PersonalDetails();
    personalDetails.setFamilyName(new FamilyName("First"));
    personalDetails.setGivenNames(new GivenNames("Last"));
    bio.setContactDetails(contactDetails);
    bio.setPersonalDetails(personalDetails);
    OrcidInternal internal = new OrcidInternal();
    internal.setPreferences(preferences);
    profile.setOrcidBio(bio);
    profile.setOrcidInternal(internal);
    OrcidHistory orcidHistory = new OrcidHistory();
    orcidHistory.setClaimed(new Claimed(true));
    orcidHistory.setCreationMethod(CreationMethod.fromValue("integration-test"));
    profile.setOrcidHistory(orcidHistory);
    orcidHistory.setSubmissionDate(new SubmissionDate(DateUtils.convertToXMLGregorianCalendar(new Date())));
    profile.setPassword("password1");
    return orcidProfileManager.createOrcidProfile(profile, false, false);
}

Example 9 with OrcidHistory

use of org.orcid.jaxb.model.message.OrcidHistory in project ORCID-Source by ORCID.

the class RegistrationManagerImplTest method createBasicProfile.

private OrcidProfile createBasicProfile(String email, boolean claimed, String sourceId) {
    OrcidProfile profile = new OrcidProfile();
    profile.setPassword("password");
    profile.setVerificationCode("1234");
    OrcidBio bio = new OrcidBio();
    ContactDetails contactDetails = new ContactDetails();
    contactDetails.addOrReplacePrimaryEmail(new Email(email));
    bio.setContactDetails(contactDetails);
    profile.setOrcidBio(bio);
    PersonalDetails personalDetails = new PersonalDetails();
    bio.setPersonalDetails(personalDetails);
    personalDetails.setGivenNames(new GivenNames("New"));
    personalDetails.setFamilyName(new FamilyName("User"));
    OrcidHistory orcidHistory = new OrcidHistory();
    orcidHistory.setClaimed(new Claimed(claimed));
    orcidHistory.setCreationMethod(CreationMethod.DIRECT);
    orcidHistory.setSubmissionDate(new SubmissionDate(DateUtils.convertToXMLGregorianCalendar(new Date())));
    profile.setOrcidHistory(orcidHistory);
    // Set the source
    profile.getOrcidHistory().setSource(new Source(sourceId));
    return profile;
}

Example 10 with OrcidHistory

use of org.orcid.jaxb.model.message.OrcidHistory in project ORCID-Source by ORCID.

the class OrcidSearchManagerImpl method buildSearchResultsFromPublicProfile.

private List<OrcidSearchResult> buildSearchResultsFromPublicProfile(List<OrcidSolrResult> solrResults) {
    List<OrcidSearchResult> orcidSearchResults = new ArrayList<OrcidSearchResult>();
    for (OrcidSolrResult solrResult : solrResults) {
        OrcidMessage orcidMessage = null;
        String orcid = solrResult.getOrcid();
        try {
            orcidSecurityManager.checkProfile(orcid);
        } catch (DeactivatedException | LockedException | OrcidDeprecatedException x) {
            OrcidSearchResult orcidSearchResult = new OrcidSearchResult();
            RelevancyScore relevancyScore = new RelevancyScore();
            relevancyScore.setValue(solrResult.getRelevancyScore());
            orcidSearchResult.setRelevancyScore(relevancyScore);
            OrcidProfile orcidProfile = new OrcidProfile();
            orcidProfile.setOrcidIdentifier(new OrcidIdentifier(jpaJaxbAdapter.getOrcidIdBase(orcid)));
            OrcidHistory history = new OrcidHistory();
            Date recordLastModified = profileDaoReadOnly.retrieveLastModifiedDate(orcid);
            history.setLastModifiedDate(new LastModifiedDate(DateUtils.convertToXMLGregorianCalendar(recordLastModified)));
            orcidProfile.setOrcidHistory(history);
            orcidSearchResult.setOrcidProfile(orcidProfile);
            orcidSearchResults.add(orcidSearchResult);
            continue;
        }
        if (cachingSource.equals(SOLR)) {
            try (Reader reader = solrDao.findByOrcidAsReader(orcid)) {
                if (reader != null) {
                    BufferedReader br = new BufferedReader(reader);
                    orcidMessage = OrcidMessage.unmarshall(br);
                }
            } catch (IOException e) {
                throw new OrcidSearchException("Error closing record stream from solr search results for orcid: " + orcid, e);
            }
        }
        OrcidProfile orcidProfile = null;
        if (orcidMessage == null) {
            // Fall back to DB
            orcidProfile = orcidProfileCacheManager.retrievePublicBio(orcid);
        } else {
            orcidProfile = orcidMessage.getOrcidProfile();
        }
        if (orcidProfile != null) {
            OrcidSearchResult orcidSearchResult = new OrcidSearchResult();
            RelevancyScore relevancyScore = new RelevancyScore();
            relevancyScore.setValue(solrResult.getRelevancyScore());
            orcidSearchResult.setRelevancyScore(relevancyScore);
            OrcidWorks orcidWorksTitlesOnly = new OrcidWorks();
            OrcidWorks fullOrcidWorks = orcidProfile.retrieveOrcidWorks();
            if (fullOrcidWorks != null && !fullOrcidWorks.getOrcidWork().isEmpty()) {
                for (OrcidWork fullOrcidWork : fullOrcidWorks.getOrcidWork()) {
                    OrcidWork orcidWorkSubset = new OrcidWork();
                    orcidWorkSubset.setVisibility(fullOrcidWork.getVisibility());
                    orcidWorkSubset.setWorkTitle(fullOrcidWork.getWorkTitle());
                    orcidWorkSubset.setWorkExternalIdentifiers(fullOrcidWork.getWorkExternalIdentifiers());
                    orcidWorksTitlesOnly.getOrcidWork().add(orcidWorkSubset);
                }
            }
            FundingList reducedFundings = new FundingList();
            FundingList fullOrcidFundings = orcidProfile.retrieveFundings();
            if (fullOrcidFundings != null && !fullOrcidFundings.getFundings().isEmpty()) {
                for (Funding fullOrcidFunding : fullOrcidFundings.getFundings()) {
                    Funding reducedFunding = new Funding();
                    reducedFunding.setVisibility(fullOrcidFunding.getVisibility());
                    reducedFunding.setDescription(fullOrcidFunding.getDescription());
                    reducedFunding.setTitle(fullOrcidFunding.getTitle());
                    reducedFundings.getFundings().add(reducedFunding);
                }
            }
            orcidProfile.setOrcidWorks(orcidWorksTitlesOnly);
            orcidProfile.setFundings(reducedFundings);
            orcidSearchResult.setOrcidProfile(orcidProfile);
            orcidSearchResults.add(orcidSearchResult);
        }
    }
    return orcidSearchResults;
}