Examples with OrcidWork org.orcid.jaxb.model.message.OrcidWork used on opensource projects

Example 21 with OrcidWork

use of org.orcid.jaxb.model.message.OrcidWork in project ORCID-Source by ORCID.

the class Api12MembersTest method viewOwnPrivateWorksTest.

@Test
public void viewOwnPrivateWorksTest() throws InterruptedException, JSONException {
    changeDefaultUserVisibility(org.orcid.jaxb.model.common_v2.Visibility.PRIVATE);
    String client1Id = getClient1ClientId();
    String client1RedirectUri = getClient1RedirectUri();
    String client1Secret = getClient1ClientSecret();
    String client2Id = getClient2ClientId();
    String client2RedirectUri = getClient2RedirectUri();
    String client2Secret = getClient2ClientSecret();
    String userId = getUser1OrcidId();
    String password = getUser1Password();
    String client1AccessToken = getAccessToken(userId, password, Arrays.asList("/activities/read-limited", "/activities/update"), client1Id, client1Secret, client1RedirectUri, true);
    String client2AccessToken = getAccessToken(userId, password, Arrays.asList("/activities/read-limited", "/activities/update"), client2Id, client2Secret, client2RedirectUri, true);
    String title1 = "Client 1 - Work " + System.currentTimeMillis();
    String title2 = "Client 2 - Work " + System.currentTimeMillis();
    Api12Helper.addWork(userId, client1AccessToken, title1, t2OAuthClient_1_2);
    Api12Helper.addWork(userId, client2AccessToken, title2, t2OAuthClient_1_2);
    Long putCode1 = 0L;
    Long putCode2 = 0L;
    // Fetch with client 1 and verify it can only see his private work
    ClientResponse client1Response = t2OAuthClient_1_2.viewWorksDetailsXml(userId, client1AccessToken);
    assertNotNull(client1Response);
    assertEquals(200, client1Response.getStatus());
    OrcidMessage orcidMessageWithNewWork = client1Response.getEntity(OrcidMessage.class);
    assertNotNull(orcidMessageWithNewWork);
    assertNotNull(orcidMessageWithNewWork.getOrcidProfile());
    assertNotNull(orcidMessageWithNewWork.getOrcidProfile().getOrcidActivities());
    assertNotNull(orcidMessageWithNewWork.getOrcidProfile().getOrcidActivities().getOrcidWorks());
    assertNotNull(orcidMessageWithNewWork.getOrcidProfile().getOrcidActivities().getOrcidWorks().getOrcidWork());
    boolean found = false;
    for (OrcidWork work : orcidMessageWithNewWork.getOrcidProfile().getOrcidActivities().getOrcidWorks().getOrcidWork()) {
        if (title2.equals(work.getWorkTitle().getTitle().getContent())) {
            fail("I found work for client # 2, which is wrong since it is private");
        }
        if (title1.equals(work.getWorkTitle().getTitle().getContent())) {
            assertEquals(Visibility.PRIVATE, work.getVisibility());
            putCode1 = Long.valueOf(work.getPutCode());
            found = true;
        }
    }
    assertTrue(found);
    // Fetch with client 2 and verify it can only see his private work
    ClientResponse client2Response = t2OAuthClient_1_2.viewWorksDetailsXml(userId, client2AccessToken);
    assertNotNull(client2Response);
    assertEquals(200, client2Response.getStatus());
    orcidMessageWithNewWork = client2Response.getEntity(OrcidMessage.class);
    assertNotNull(orcidMessageWithNewWork);
    assertNotNull(orcidMessageWithNewWork.getOrcidProfile());
    assertNotNull(orcidMessageWithNewWork.getOrcidProfile().getOrcidActivities());
    assertNotNull(orcidMessageWithNewWork.getOrcidProfile().getOrcidActivities().getOrcidWorks());
    assertNotNull(orcidMessageWithNewWork.getOrcidProfile().getOrcidActivities().getOrcidWorks().getOrcidWork());
    found = false;
    for (OrcidWork work : orcidMessageWithNewWork.getOrcidProfile().getOrcidActivities().getOrcidWorks().getOrcidWork()) {
        if (title1.equals(work.getWorkTitle().getTitle().getContent())) {
            fail("I found work for client # 1, which is wrong since it is private");
        }
        if (title2.equals(work.getWorkTitle().getTitle().getContent())) {
            assertEquals(Visibility.PRIVATE, work.getVisibility());
            putCode2 = Long.valueOf(work.getPutCode());
            found = true;
        }
    }
    assertTrue(found);
    // Delete both works before finishing
    ClientResponse deleteResponse = memberV2ApiClient.deleteWorkXml(this.getUser1OrcidId(), putCode1, client1AccessToken);
    assertEquals(Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
    deleteResponse = memberV2ApiClient.deleteWorkXml(this.getUser1OrcidId(), putCode2, client2AccessToken);
    assertEquals(Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
}

Example 22 with OrcidWork

use of org.orcid.jaxb.model.message.OrcidWork in project ORCID-Source by ORCID.

the class Api12MembersTest method activitiesReadLimitedTest.

@Test
public void activitiesReadLimitedTest() throws InterruptedException, JSONException {
    changeDefaultUserVisibility(org.orcid.jaxb.model.common_v2.Visibility.PUBLIC);
    String clientId = getClient1ClientId();
    String clientRedirectUri = getClient1RedirectUri();
    String clientSecret = getClient1ClientSecret();
    String userId = getUser1OrcidId();
    String password = getUser1Password();
    String workTitle = "Work " + System.currentTimeMillis();
    String fundingTitle = "Funding " + System.currentTimeMillis();
    String orgName = "Org_" + System.currentTimeMillis();
    String accessToken = getAccessToken(userId, password, Arrays.asList("/read-limited", "/activities/update"), clientId, clientSecret, clientRedirectUri, true);
    Long workPutCode = null;
    Api12Helper.addWork(userId, accessToken, workTitle, t2OAuthClient_1_2);
    Long fundingPutCode = null;
    Api12Helper.addFunding(userId, accessToken, fundingTitle, t2OAuthClient_1_2);
    Long affiliationPutCode = null;
    Api12Helper.addAffiliation(userId, accessToken, orgName, t2OAuthClient_1_2);
    ClientResponse worksResponse = t2OAuthClient_1_2.viewWorksDetailsXml(userId, accessToken);
    assertNotNull(worksResponse);
    assertEquals(200, worksResponse.getStatus());
    assertEquals("application/vnd.orcid+xml; charset=UTF-8; qs=5", worksResponse.getType().toString());
    OrcidMessage orcidMessageWithNewWork = worksResponse.getEntity(OrcidMessage.class);
    assertNotNull(orcidMessageWithNewWork);
    assertNotNull(orcidMessageWithNewWork.getOrcidProfile());
    assertNotNull(orcidMessageWithNewWork.getOrcidProfile().getOrcidActivities());
    assertNotNull(orcidMessageWithNewWork.getOrcidProfile().getOrcidActivities().getOrcidWorks());
    assertNotNull(orcidMessageWithNewWork.getOrcidProfile().getOrcidActivities().getOrcidWorks().getOrcidWork());
    assertTrue(orcidMessageWithNewWork.getOrcidProfile().getOrcidActivities().getOrcidWorks().getOrcidWork().size() > 0);
    boolean workFound = false;
    for (OrcidWork work : orcidMessageWithNewWork.getOrcidProfile().getOrcidActivities().getOrcidWorks().getOrcidWork()) {
        if (workTitle.equals(work.getWorkTitle().getTitle().getContent())) {
            // Default user visibility should be public
            assertEquals(Visibility.PUBLIC, work.getVisibility());
            assertNotNull(work.getPutCode());
            workPutCode = Long.valueOf(work.getPutCode());
            workFound = true;
        }
    }
    assertTrue(workFound);
    ClientResponse fundingResponse = t2OAuthClient_1_2.viewFundingDetailsXml(userId, accessToken);
    assertNotNull(fundingResponse);
    assertEquals(200, fundingResponse.getStatus());
    assertEquals("application/vnd.orcid+xml; charset=UTF-8; qs=5", fundingResponse.getType().toString());
    OrcidMessage orcidMessageWithNewFunding = fundingResponse.getEntity(OrcidMessage.class);
    assertNotNull(orcidMessageWithNewFunding);
    assertNotNull(orcidMessageWithNewFunding.getOrcidProfile());
    assertNotNull(orcidMessageWithNewFunding.getOrcidProfile().getOrcidActivities());
    assertNotNull(orcidMessageWithNewFunding.getOrcidProfile().getOrcidActivities().getFundings());
    assertNotNull(orcidMessageWithNewFunding.getOrcidProfile().getOrcidActivities().getFundings().getFundings());
    assertTrue(orcidMessageWithNewFunding.getOrcidProfile().getOrcidActivities().getFundings().getFundings().size() > 0);
    boolean fundingFound = false;
    for (Funding funding : orcidMessageWithNewFunding.getOrcidProfile().getOrcidActivities().getFundings().getFundings()) {
        if (fundingTitle.equals(funding.getTitle().getTitle().getContent())) {
            // Default user visibility should be public
            assertEquals(Visibility.PUBLIC, funding.getVisibility());
            assertNotNull(funding.getPutCode());
            fundingPutCode = Long.valueOf(funding.getPutCode());
            fundingFound = true;
        }
    }
    assertTrue(fundingFound);
    ClientResponse affiliationResponse = t2OAuthClient_1_2.viewAffiliationDetailsXml(userId, accessToken);
    assertNotNull(affiliationResponse);
    assertEquals(200, affiliationResponse.getStatus());
    assertEquals("application/vnd.orcid+xml; charset=UTF-8; qs=5", affiliationResponse.getType().toString());
    OrcidMessage orcidMessageWithNewAffiliation = affiliationResponse.getEntity(OrcidMessage.class);
    assertNotNull(orcidMessageWithNewAffiliation);
    assertNotNull(orcidMessageWithNewAffiliation.getOrcidProfile());
    assertNotNull(orcidMessageWithNewAffiliation.getOrcidProfile().getOrcidActivities());
    assertNotNull(orcidMessageWithNewAffiliation.getOrcidProfile().getOrcidActivities().getAffiliations());
    assertNotNull(orcidMessageWithNewAffiliation.getOrcidProfile().getOrcidActivities().getAffiliations().getAffiliation());
    assertTrue(orcidMessageWithNewAffiliation.getOrcidProfile().getOrcidActivities().getAffiliations().getAffiliation().size() > 0);
    boolean affiliationFound = false;
    for (Affiliation affiliation : orcidMessageWithNewAffiliation.getOrcidProfile().getOrcidActivities().getAffiliations().getAffiliation()) {
        if (orgName.equals(affiliation.getOrganization().getName())) {
            // Default user visibility should be public
            assertEquals(Visibility.PUBLIC, affiliation.getVisibility());
            assertNotNull(affiliation.getPutCode());
            affiliationPutCode = Long.valueOf(affiliation.getPutCode());
            affiliationFound = true;
        }
    }
    assertTrue(affiliationFound);
    // Delete work
    ClientResponse deleteResponse = memberV2ApiClient.deleteWorkXml(this.getUser1OrcidId(), workPutCode, accessToken);
    assertEquals(Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
    // Delete funding
    deleteResponse = memberV2ApiClient.deleteFundingXml(this.getUser1OrcidId(), fundingPutCode, accessToken);
    assertEquals(Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
    // Delete affiliation
    deleteResponse = memberV2ApiClient.deleteEducationXml(this.getUser1OrcidId(), affiliationPutCode, accessToken);
    assertEquals(Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
}

Example 23 with OrcidWork

use of org.orcid.jaxb.model.message.OrcidWork in project ORCID-Source by ORCID.

the class Api12Helper method addWork.

protected static void addWork(String userOrcid, String token, String title, T2OAuthAPIService<ClientResponse> oauthT2Client) {
    String id = String.valueOf(System.currentTimeMillis());
    OrcidMessage orcidMessage = new OrcidMessage();
    orcidMessage.setMessageVersion(OrcidMessage.DEFAULT_VERSION);
    OrcidProfile orcidProfile = new OrcidProfile();
    orcidMessage.setOrcidProfile(orcidProfile);
    OrcidActivities orcidActivities = new OrcidActivities();
    orcidProfile.setOrcidActivities(orcidActivities);
    OrcidWorks orcidWorks = new OrcidWorks();
    orcidActivities.setOrcidWorks(orcidWorks);
    OrcidWork orcidWork = new OrcidWork();
    orcidWorks.getOrcidWork().add(orcidWork);
    orcidWork.setWorkType(WorkType.JOURNAL_ARTICLE);
    orcidWork.setVisibility(Visibility.LIMITED);
    WorkTitle workTitle = new WorkTitle();
    orcidWork.setWorkTitle(workTitle);
    WorkExternalIdentifier wei = new WorkExternalIdentifier();
    wei.setWorkExternalIdentifierId(new WorkExternalIdentifierId(id));
    wei.setWorkExternalIdentifierType(WorkExternalIdentifierType.DOI);
    WorkExternalIdentifiers extIds = new WorkExternalIdentifiers();
    extIds.getWorkExternalIdentifier().add(wei);
    orcidWork.setWorkExternalIdentifiers(extIds);
    workTitle.setTitle(new Title(title));
    ClientResponse clientResponse = oauthT2Client.addWorksXml(userOrcid, orcidMessage, token);
    assertEquals(201, clientResponse.getStatus());
}

Example 24 with OrcidWork

use of org.orcid.jaxb.model.message.OrcidWork in project ORCID-Source by ORCID.

the class T2OrcidApiServiceDelegatorTest method testUpdateExistingNonPrivateWork.

@Test
public void testUpdateExistingNonPrivateWork() {
    SecurityContextTestUtils.setUpSecurityContext("4444-4444-4444-4446", ScopePathType.ORCID_WORKS_UPDATE);
    OrcidMessage orcidMessage = new OrcidMessage();
    orcidMessage.setMessageVersion("1.2_rc6");
    OrcidProfile orcidProfile = new OrcidProfile();
    orcidMessage.setOrcidProfile(orcidProfile);
    orcidProfile.setOrcidIdentifier(new OrcidIdentifier("4444-4444-4444-4446"));
    OrcidActivities orcidActivities = new OrcidActivities();
    orcidProfile.setOrcidActivities(orcidActivities);
    OrcidWorks orcidWorks = new OrcidWorks();
    orcidActivities.setOrcidWorks(orcidWorks);
    OrcidWork orcidWork = new OrcidWork();
    orcidWorks.getOrcidWork().add(orcidWork);
    orcidWork.setPutCode("5");
    WorkTitle workTitle = new WorkTitle();
    workTitle.setTitle(new Title("Updated by works update"));
    orcidWork.setWorkTitle(workTitle);
    orcidWork.setWorkType(WorkType.ARTISTIC_PERFORMANCE);
    WorkExternalIdentifiers workExternalIdentifiers = new WorkExternalIdentifiers();
    WorkExternalIdentifier wei = new WorkExternalIdentifier();
    wei.setWorkExternalIdentifierType(WorkExternalIdentifierType.DOI);
    wei.setWorkExternalIdentifierId(new WorkExternalIdentifierId("abc123"));
    workExternalIdentifiers.getWorkExternalIdentifier().add(wei);
    orcidWork.setWorkExternalIdentifiers(workExternalIdentifiers);
    Response response = t2OrcidApiServiceDelegator.updateWorks(mockedUriInfo, "4444-4444-4444-4446", orcidMessage);
    assertNotNull(response);
    OrcidProfile retrievedProfile = orcidProfileManager.retrieveOrcidProfile("4444-4444-4444-4446");
    List<OrcidWork> retreivedWorksList = retrievedProfile.getOrcidActivities().getOrcidWorks().getOrcidWork();
    assertEquals(4, retreivedWorksList.size());
    boolean foundWorkFromAnotherSource = false;
    boolean foundUpdated = false;
    boolean foundExisting = false;
    boolean foundExistingPrivate = false;
    for (OrcidWork retrievedWork : retreivedWorksList) {
        if ("5".equals(retrievedWork.getPutCode())) {
            // The updated work
            assertEquals("Updated by works update", retrievedWork.getWorkTitle().getTitle().getContent());
            assertEquals(Visibility.PUBLIC, retrievedWork.getVisibility());
            assertEquals("APP-5555555555555555", retrievedWork.getSource().retrieveSourcePath());
            foundUpdated = true;
        } else if ("6".equals(retrievedWork.getPutCode())) {
            assertEquals("Journal article B", retrievedWork.getWorkTitle().getTitle().getContent());
            assertEquals(Visibility.LIMITED, retrievedWork.getVisibility());
            assertEquals("4444-4444-4444-4446", retrievedWork.getSource().retrieveSourcePath());
            foundWorkFromAnotherSource = true;
        } else if ("7".equals(retrievedWork.getPutCode())) {
            // Existing private work
            assertEquals("Journal article C", retrievedWork.getWorkTitle().getTitle().getContent());
            assertEquals(Visibility.PRIVATE, retrievedWork.getVisibility());
            assertEquals("APP-5555555555555555", retrievedWork.getSource().retrieveSourcePath());
            foundExisting = true;
        } else if ("8".equals(retrievedWork.getPutCode())) {
            // Existing private work added by the user
            assertEquals("Journal article D", retrievedWork.getWorkTitle().getTitle().getContent());
            assertEquals(Visibility.PRIVATE, retrievedWork.getVisibility());
            assertEquals("4444-4444-4444-4446", retrievedWork.getSource().retrieveSourcePath());
            foundExistingPrivate = true;
        }
    }
    assertTrue("Work from other source should be there", foundWorkFromAnotherSource);
    assertTrue("Updated work should be there", foundUpdated);
    assertTrue("Existing private work should be there", foundExisting);
    assertTrue("Existing private work added by the user should be there", foundExistingPrivate);
}

Example 25 with OrcidWork

use of org.orcid.jaxb.model.message.OrcidWork in project ORCID-Source by ORCID.

the class VisibilityFilterImpl method filter.

/**
 * Remove the elements that are not present in the list of set of
 * {@link org.orcid.jaxb.model.message .Visibility}s present in the array
 * passed in.
 *
 * @param messageToBeFiltered
 *            the {@link org.orcid.jaxb.model.message.OrcidMessage} that
 *            will be traversed looking for
 *            {@link org .orcid.jaxb.model.message.VisibilityType} elements.
 * @param source
 *            The orcid source that is executing the request
 * @param removeAttribute
 *            should all {@link org.orcid.jaxb.model.message.Visibility}
 *            elements be removed from the object graph. This has the effect
 *            that they will not be present in the resulting JAXB
 *            serialisation.
 * @param visibilities
 *            What {@link org.orcid.jaxb.model.message.Visibility} elements
 *            should be allowed.
 * @return the cleansed {@link org.orcid.jaxb.model.message.OrcidMessage}
 */
@Override
public OrcidMessage filter(OrcidMessage messageToBeFiltered, final String sourceId, final boolean allowPrivateWorks, final boolean allowPrivateFunding, final boolean allowPrivateAffiliations, Visibility... visibilities) {
    if (messageToBeFiltered == null || visibilities == null || visibilities.length == 0) {
        return null;
    }
    String messageIdForLog = getMessageIdForLog(messageToBeFiltered);
    LOGGER.debug("About to filter message: " + messageIdForLog);
    final Set<Visibility> visibilitySet = new HashSet<Visibility>(Arrays.asList(visibilities));
    if (visibilitySet.contains(Visibility.SYSTEM)) {
        return messageToBeFiltered;
    } else {
        TreeCleaner treeCleaner = new TreeCleaner();
        treeCleaner.clean(messageToBeFiltered, new TreeCleaningStrategy() {

            public TreeCleaningDecision needsStripping(Object obj) {
                TreeCleaningDecision decision = TreeCleaningDecision.DEFAULT;
                if (obj != null) {
                    Class<?> clazz = obj.getClass();
                    if (!PojoUtil.isEmpty(sourceId)) {
                        if (allowPrivateAffiliations && Affiliation.class.isAssignableFrom(clazz)) {
                            Affiliation affiliation = (Affiliation) obj;
                            Source source = affiliation.getSource();
                            if (source != null) {
                                String sourcePath = source.retrieveSourcePath();
                                if (sourcePath != null) {
                                    if (sourceId.equals(sourcePath)) {
                                        decision = TreeCleaningDecision.IGNORE;
                                    }
                                }
                            }
                        } else if (allowPrivateFunding && Funding.class.isAssignableFrom(clazz)) {
                            Funding funding = (Funding) obj;
                            Source source = funding.getSource();
                            if (source != null) {
                                String sourcePath = source.retrieveSourcePath();
                                if (sourcePath != null) {
                                    if (sourceId.equals(sourcePath)) {
                                        decision = TreeCleaningDecision.IGNORE;
                                    }
                                }
                            }
                        } else if (allowPrivateWorks && OrcidWork.class.isAssignableFrom(clazz)) {
                            OrcidWork work = (OrcidWork) obj;
                            Source source = work.getSource();
                            if (source != null) {
                                if (sourceId.equals(source.retrieveSourcePath())) {
                                    decision = TreeCleaningDecision.IGNORE;
                                }
                            }
                        }
                    }
                    // fields are inside the country element
                    if (Address.class.isAssignableFrom(clazz)) {
                        Address address = (Address) obj;
                        // Remove empty addresses
                        if (address.getCountry() == null) {
                            decision = TreeCleaningDecision.CLEANING_REQUIRED;
                        } else {
                            Country country = address.getCountry();
                            // Allow public addresses
                            if (Visibility.PUBLIC.equals(country.getVisibility())) {
                                decision = TreeCleaningDecision.IGNORE;
                            } else if (visibilitySet.contains(Visibility.LIMITED)) {
                                // Allow limited visibility when possible
                                if (Visibility.LIMITED.equals(country.getVisibility())) {
                                    decision = TreeCleaningDecision.IGNORE;
                                } else {
                                    // As last resource, check the source
                                    Source source = country.getSource();
                                    if (source != null && sourceId != null && sourceId.equals(source.retrieveSourcePath())) {
                                        decision = TreeCleaningDecision.IGNORE;
                                    } else {
                                        decision = TreeCleaningDecision.CLEANING_REQUIRED;
                                    }
                                }
                            }
                        }
                    }
                    if (Email.class.isAssignableFrom(clazz)) {
                        // include all emails if present
                        try {
                            Authentication authentication = getAuthentication();
                            if (authentication != null && messageToBeFiltered.getOrcidProfile() != null) {
                                permissionChecker.checkPermissions(getAuthentication(), ScopePathType.EMAIL_READ_PRIVATE, messageToBeFiltered.getOrcidProfile().retrieveOrcidPath());
                                decision = TreeCleaningDecision.IGNORE;
                            }
                        } catch (AccessControlException e) {
                        // private email can't be read, do nothing here
                        }
                    }
                    // that implements PrivateVisibleToSource
                    if (sourceId != null)
                        if (PrivateVisibleToSource.class.isAssignableFrom(clazz) && visibilitySet.contains(Visibility.LIMITED)) {
                            Source source = ((PrivateVisibleToSource) obj).getSource();
                            if (source != null) {
                                if (sourceId.equals(source.retrieveSourcePath())) {
                                    decision = TreeCleaningDecision.IGNORE;
                                }
                            }
                        }
                    if (TreeCleaningDecision.DEFAULT.equals(decision)) {
                        if (WorkContributors.class.isAssignableFrom(clazz)) {
                            decision = TreeCleaningDecision.IGNORE;
                        } else if (VisibilityType.class.isAssignableFrom(clazz)) {
                            VisibilityType visibilityType = (VisibilityType) obj;
                            if ((visibilityType.getVisibility() == null || !visibilitySet.contains(visibilityType.getVisibility()))) {
                                decision = TreeCleaningDecision.CLEANING_REQUIRED;
                            }
                        }
                    }
                }
                return decision;
            }
        });
        OrcidProfile orcidProfile = messageToBeFiltered.getOrcidProfile();
        if (orcidProfile != null) {
            orcidProfile.setOrcidInternal(null);
        }
        LOGGER.debug("Finished filtering message: " + messageIdForLog);
        return messageToBeFiltered;
    }
}